Wall clock time and date at job start Wed Apr 1 2020 04:32:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.52997 * 109.47415 * 2 1
4 4 C 1.47206 * 109.47021 * 120.00065 * 2 1 3
5 5 C 2.64598 * 109.47129 * 120.00201 * 2 1 3
6 6 C 4.07804 * 109.47170 * 120.00123 * 2 1 3
7 7 O 1.21615 * 120.00074 * 87.08674 * 6 5 4
8 8 N 1.34777 * 120.00084 * 267.08695 * 6 5 4
9 9 C 1.47180 * 135.99309 * 359.62706 * 8 6 5
10 10 C 1.52572 * 87.95125 * 206.66967 * 9 8 6
11 11 C 1.47178 * 135.99055 * 180.02562 * 8 6 5
12 12 C 1.52585 * 114.00274 * 88.37384 * 10 9 8
13 13 C 1.53247 * 109.01275 * 186.32612 * 12 10 9
14 14 N 1.46839 * 109.42154 * 303.38298 * 13 12 10
15 15 C 1.46897 * 111.00227 * 187.90262 * 14 13 12
16 16 C 1.50706 * 109.46645 * 65.42978 * 15 14 13
17 17 O 1.21291 * 120.00145 * 0.02562 * 16 15 14
18 18 N 1.34784 * 119.99591 * 179.97438 * 16 15 14
19 19 C 1.37100 * 119.99714 * 179.97438 * 18 16 15
20 20 H 1.07998 * 119.99874 * 0.02562 * 19 18 16
21 21 C 1.38943 * 119.99698 * 180.02562 * 19 18 16
22 22 N 1.31415 * 120.00064 * 180.02562 * 21 19 18
23 23 Si 1.86802 * 120.00360 * 0.02562 * 21 19 18
24 24 H 1.48495 * 109.46999 * 89.99985 * 23 21 19
25 25 H 1.48503 * 109.47296 * 210.00165 * 23 21 19
26 26 H 1.48505 * 109.46965 * 330.00027 * 23 21 19
27 27 C 1.46837 * 111.47471 * 63.60080 * 14 13 12
28 28 C 1.52593 * 114.36100 * 220.64711 * 10 9 8
29 29 H 1.09004 * 109.46733 * 299.99664 * 1 2 3
30 30 H 1.08992 * 109.47068 * 59.99393 * 1 2 3
31 31 H 1.08996 * 109.47407 * 180.02562 * 1 2 3
32 32 H 1.09000 * 109.46986 * 239.99882 * 2 1 3
33 33 H 1.09001 * 109.47375 * 179.97438 * 3 2 1
34 34 H 1.09002 * 109.47045 * 300.00068 * 3 2 1
35 35 H 1.09000 * 109.47140 * 59.99976 * 3 2 1
36 36 H 1.08998 * 113.48799 * 321.36020 * 9 8 6
37 37 H 1.08998 * 113.49094 * 91.87056 * 9 8 6
38 38 H 1.09000 * 113.48756 * 268.12621 * 11 8 6
39 39 H 1.08996 * 113.49193 * 38.64934 * 11 8 6
40 40 H 1.09003 * 109.54416 * 306.18026 * 12 10 9
41 41 H 1.09000 * 109.55253 * 66.46265 * 12 10 9
42 42 H 1.09001 * 109.48207 * 183.40271 * 13 12 10
43 43 H 1.08996 * 109.48607 * 63.36641 * 13 12 10
44 44 H 1.09002 * 109.47237 * 185.42789 * 15 14 13
45 45 H 1.08998 * 109.47400 * 305.43535 * 15 14 13
46 46 H 0.96995 * 119.99880 * 0.02562 * 18 16 15
47 47 H 0.96998 * 119.99879 * 180.02562 * 22 21 19
48 48 H 1.08999 * 109.48243 * 176.40795 * 27 14 13
49 49 H 1.09004 * 109.48834 * 56.38812 * 27 14 13
50 50 H 1.08994 * 109.54931 * 293.70845 * 28 10 9
51 51 H 1.09003 * 109.54689 * 53.89665 * 28 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 6 2.0207 -0.6940 1.2019
5 6 2.4120 -1.2474 2.1604
6 6 2.8894 -1.9225 3.3297
7 8 3.5443 -2.9412 3.2189
8 7 2.6129 -1.4288 4.5529
9 6 1.8867 -0.2646 5.0853
10 6 2.7841 -0.3371 6.3171
11 6 2.9109 -1.8137 5.9419
12 6 4.0822 0.4542 6.1868
13 6 4.9610 0.1769 7.4112
14 7 4.2180 0.5143 8.6320
15 6 5.0867 0.4407 9.8143
16 6 6.1517 1.5030 9.7220
17 8 6.1835 2.2483 8.7656
18 7 7.0681 1.6255 10.7027
19 6 8.0373 2.5915 10.6184
20 1 8.0661 3.2546 9.7665
21 6 8.9823 2.7174 11.6291
22 7 9.9110 3.6437 11.5487
23 14 8.9328 1.5700 13.1024
24 1 9.7576 0.3676 12.8212
25 1 9.4716 2.2721 14.2950
26 1 7.5299 1.1583 13.3622
27 6 3.0346 -0.3398 8.7945
28 6 2.0615 -0.0877 7.6378
29 1 -0.3633 0.5138 0.8901
30 1 -0.3633 0.5139 -0.8899
31 1 -0.3634 -1.0276 0.0005
32 1 1.8933 -0.5139 -0.8900
33 1 3.1301 1.4424 0.0005
34 1 1.6768 1.9563 -0.8900
35 1 1.6768 1.9563 0.8900
36 1 2.0300 0.6425 4.4982
37 1 0.8375 -0.4678 5.2995
38 1 2.1439 -2.4438 6.3921
39 1 3.9169 -2.2112 6.0763
40 1 4.6080 0.1459 5.2831
41 1 3.8564 1.5193 6.1336
42 1 5.8640 0.7848 7.3557
43 1 5.2336 -0.8782 7.4317
44 1 4.4912 0.6004 10.7132
45 1 5.5565 -0.5418 9.8594
46 1 7.0423 1.0297 11.4676
47 1 10.5710 3.7313 12.2541
48 1 2.5444 -0.1058 9.7394
49 1 3.3386 -1.3866 8.7922
50 1 1.7123 0.9441 7.6732
51 1 1.2106 -0.7638 7.7212
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001570051906.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:32:00
Heat of formation + Delta-G solvation = 24.586463 kcal
Electronic energy + Delta-G solvation = -30025.530931 eV
Core-core repulsion = 25927.750300 eV
Total energy + Delta-G solvation = -4097.780631 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.88 seconds
Orbital eigenvalues (eV)
-41.36320 -39.10820 -38.36431 -36.81878 -36.67108 -33.96360 -32.74695 -32.02676
-31.63426 -30.91530 -28.74732 -27.70801 -26.81831 -26.26153 -24.22361 -23.63741
-23.31884 -21.88693 -20.94619 -19.36309 -18.46096 -18.25743 -18.18254 -16.74756
-16.30070 -16.26625 -15.91876 -15.43527 -15.11167 -15.04003 -14.86662 -14.57907
-14.33385 -14.03381 -13.82913 -13.69661 -13.37623 -13.14811 -12.94081 -12.76005
-12.65055 -12.52831 -12.50181 -12.21005 -12.10588 -11.96134 -11.89791 -11.83661
-11.46069 -11.17596 -11.14229 -10.96016 -10.66745 -10.59963 -10.53756 -10.46435
-10.45355 -10.21336 -9.97068 -9.52136 -9.03863 -8.54039 -8.17442 -7.93292
-6.30658 -3.81949 1.29347 1.90792 2.59422 3.02674 3.06954 3.15327
3.25839 3.59413 3.74338 3.84558 4.02358 4.10714 4.42694 4.44002
4.51917 4.59962 4.65364 4.75889 4.84143 4.85863 5.07342 5.10503
5.11548 5.18290 5.22598 5.27524 5.30053 5.34007 5.37931 5.41738
5.44255 5.47119 5.57300 5.60924 5.66850 5.68643 5.71890 5.76515
5.78562 5.89687 5.94112 5.97717 6.11199 6.32715 6.44617 6.92711
7.19309 7.33500 7.35693 7.59372 7.78955 8.15262 8.60839 8.95904
9.43175 9.84163 10.82466
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.017554 B = 0.001928 C = 0.001848
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1594.726095 B =14519.173452 C =15150.302850
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C 0.008 3.992
3 C -0.147 4.147
4 C -0.074 4.074
5 C -0.218 4.218
6 C 0.661 3.339
7 O -0.526 6.526
8 N -0.635 5.635
9 C 0.108 3.892
10 C -0.091 4.091
11 C 0.115 3.885
12 C -0.084 4.084
13 C 0.054 3.946
14 N -0.516 5.516
15 C 0.044 3.956
16 C 0.452 3.548
17 O -0.559 6.559
18 N -0.592 5.592
19 C -0.304 4.304
20 H 0.120 0.880
21 C 0.041 3.959
22 N -0.882 5.882
23 Si 0.879 3.121
24 H -0.271 1.271
25 H -0.277 1.277
26 H -0.269 1.269
27 C 0.056 3.944
28 C -0.094 4.094
29 H 0.062 0.938
30 H 0.071 0.929
31 H 0.060 0.940
32 H 0.100 0.900
33 H 0.063 0.937
34 H 0.071 0.929
35 H 0.063 0.937
36 H 0.081 0.919
37 H 0.089 0.911
38 H 0.088 0.912
39 H 0.082 0.918
40 H 0.065 0.935
41 H 0.082 0.918
42 H 0.106 0.894
43 H 0.023 0.977
44 H 0.090 0.910
45 H 0.048 0.952
46 H 0.370 0.630
47 H 0.273 0.727
48 H 0.076 0.924
49 H 0.031 0.969
50 H 0.082 0.918
51 H 0.070 0.930
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.156 -9.496 -14.898 28.337
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.010 4.010
3 C -0.204 4.204
4 C -0.076 4.076
5 C -0.220 4.220
6 C 0.451 3.549
7 O -0.404 6.404
8 N -0.369 5.369
9 C -0.015 4.015
10 C -0.092 4.092
11 C -0.007 4.007
12 C -0.121 4.121
13 C -0.073 4.073
14 N -0.240 5.240
15 C -0.087 4.087
16 C 0.238 3.762
17 O -0.440 6.440
18 N -0.231 5.231
19 C -0.432 4.432
20 H 0.137 0.863
21 C -0.162 4.162
22 N -0.522 5.522
23 Si 0.706 3.294
24 H -0.197 1.197
25 H -0.202 1.202
26 H -0.195 1.195
27 C -0.072 4.072
28 C -0.132 4.132
29 H 0.081 0.919
30 H 0.090 0.910
31 H 0.079 0.921
32 H 0.118 0.882
33 H 0.082 0.918
34 H 0.090 0.910
35 H 0.082 0.918
36 H 0.100 0.900
37 H 0.107 0.893
38 H 0.106 0.894
39 H 0.100 0.900
40 H 0.084 0.916
41 H 0.101 0.899
42 H 0.124 0.876
43 H 0.041 0.959
44 H 0.108 0.892
45 H 0.066 0.934
46 H 0.203 0.797
47 H 0.084 0.916
48 H 0.095 0.905
49 H 0.049 0.951
50 H 0.101 0.899
51 H 0.089 0.911
Dipole moment (debyes) X Y Z Total
from point charges -21.691 -9.044 -15.768 28.301
hybrid contribution 0.374 -1.764 1.406 2.286
sum -21.318 -10.808 -14.362 27.884
Atomic orbital electron populations
1.21840 0.92701 1.02753 1.02977 1.18528 0.96270 0.95368 0.90848
1.21850 1.01949 0.93593 1.03006 1.22622 0.94520 0.95164 0.95336
1.20513 1.03590 1.01464 0.96480 1.14045 0.79321 0.82336 0.79180
1.90870 1.39767 1.24022 1.85690 1.49355 1.54243 1.28948 1.04378
1.23101 0.96736 0.88930 0.92715 1.21849 0.97408 0.95190 0.94788
1.23146 1.02489 0.96915 0.78146 1.21243 0.92735 1.00465 0.97702
1.22266 0.98239 0.98444 0.88382 1.61373 1.07276 1.53509 1.01885
1.21860 0.95141 0.97655 0.94085 1.19668 0.83979 0.87654 0.84897
1.90524 1.74714 1.45943 1.32865 1.42226 1.27986 1.32565 1.20338
1.19419 1.04450 1.10679 1.08683 0.86276 1.25038 0.95997 0.97148
0.98016 1.69622 1.15940 1.32401 1.34219 0.86677 0.78434 0.81238
0.83062 1.19697 1.20204 1.19482 1.22102 0.91940 0.94554 0.98615
1.21399 0.96815 1.03143 0.91860 0.91905 0.91046 0.92060 0.88189
0.91834 0.91045 0.91821 0.90014 0.89305 0.89393 0.89976 0.91601
0.89912 0.87556 0.95931 0.89216 0.93443 0.79747 0.91643 0.90538
0.95112 0.89934 0.91115
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.67 9.15 37.16 0.34 -0.33 16
2 C 0.01 0.05 3.30 -93.40 -0.31 -0.26 16
3 C -0.15 -0.78 9.15 37.16 0.34 -0.44 16
4 C -0.07 -0.73 12.56 -37.12 -0.47 -1.19 16
5 C -0.22 -2.67 13.42 -38.84 -0.52 -3.19 16
6 C 0.66 9.29 7.90 -14.33 -0.11 9.18 16
7 O -0.53 -9.29 17.86 5.26 0.09 -9.19 16
8 N -0.64 -7.22 3.48 -188.23 -0.66 -7.88 16
9 C 0.11 0.91 7.52 -8.32 -0.06 0.85 16
10 C -0.09 -0.87 0.85 -155.21 -0.13 -1.00 16
11 C 0.11 1.15 7.67 -8.17 -0.06 1.09 16
12 C -0.08 -1.05 5.27 -26.82 -0.14 -1.19 16
13 C 0.05 0.82 5.09 -3.73 -0.02 0.80 16
14 N -0.52 -7.61 4.35 -235.86 -1.03 -8.64 16
15 C 0.04 0.71 5.45 -4.97 -0.03 0.68 16
16 C 0.45 9.98 7.44 -10.98 -0.08 9.90 16
17 O -0.56 -14.42 13.89 5.55 0.08 -14.34 16
18 N -0.59 -13.85 5.09 -10.96 -0.06 -13.91 16
19 C -0.30 -8.49 10.16 -14.93 -0.15 -8.64 16
20 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16
21 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16
22 N -0.88 -25.66 13.96 55.50 0.77 -24.89 16
23 Si 0.88 19.25 27.74 -169.99 -4.71 14.53 16
24 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16
25 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16
26 H -0.27 -5.35 6.52 56.52 0.37 -4.98 16
27 C 0.06 0.59 5.45 -3.73 -0.02 0.57 16
28 C -0.09 -0.79 5.34 -26.81 -0.14 -0.94 16
29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16
30 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16
31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16
32 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16
33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16
34 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16
35 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16
36 H 0.08 0.67 8.10 -51.93 -0.42 0.25 16
37 H 0.09 0.57 8.10 -51.93 -0.42 0.15 16
38 H 0.09 0.71 8.01 -51.93 -0.42 0.29 16
39 H 0.08 0.94 7.78 -51.93 -0.40 0.53 16
40 H 0.07 0.86 7.95 -51.93 -0.41 0.45 16
41 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16
42 H 0.11 2.03 5.73 -51.93 -0.30 1.73 16
43 H 0.02 0.32 7.81 -51.93 -0.41 -0.08 16
44 H 0.09 1.25 7.96 -51.93 -0.41 0.84 16
45 H 0.05 0.68 8.13 -51.93 -0.42 0.26 16
46 H 0.37 7.61 5.76 -40.82 -0.24 7.38 16
47 H 0.27 7.34 8.31 -40.82 -0.34 7.01 16
48 H 0.08 0.73 7.97 -51.93 -0.41 0.32 16
49 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16
50 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16
51 H 0.07 0.43 8.02 -51.93 -0.42 0.02 16
LS Contribution 416.76 15.07 6.28 6.28
Total: -1.00 -35.11 416.76 -9.36 -44.47
By element:
Atomic # 1 Polarization: 15.14 SS G_CDS: -8.46 Total: 6.67 kcal
Atomic # 6 Polarization: 8.56 SS G_CDS: -1.67 Total: 6.89 kcal
Atomic # 7 Polarization: -54.35 SS G_CDS: -0.96 Total: -55.32 kcal
Atomic # 8 Polarization: -23.71 SS G_CDS: 0.17 Total: -23.53 kcal
Atomic # 14 Polarization: 19.25 SS G_CDS: -4.71 Total: 14.53 kcal
Total LS contribution 6.28 Total: 6.28 kcal
Total: -35.11 -9.36 -44.47 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001570051906.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 69.055 kcal
(2) G-P(sol) polarization free energy of solvation -35.113 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.942 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.355 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.469 kcal
(6) G-S(sol) free energy of system = (1) + (5) 24.586 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.88 seconds