Wall clock time and date at job start Wed Apr 1 2020 04:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47415 * 2 1 4 4 C 1.47206 * 109.47021 * 120.00065 * 2 1 3 5 5 C 2.64598 * 109.47129 * 120.00201 * 2 1 3 6 6 C 4.07804 * 109.47170 * 120.00123 * 2 1 3 7 7 O 1.21615 * 120.00074 * 87.08674 * 6 5 4 8 8 N 1.34777 * 120.00084 * 267.08695 * 6 5 4 9 9 C 1.47180 * 135.99309 * 359.62706 * 8 6 5 10 10 C 1.52572 * 87.95125 * 206.66967 * 9 8 6 11 11 C 1.47178 * 135.99055 * 180.02562 * 8 6 5 12 12 C 1.52585 * 114.00274 * 88.37384 * 10 9 8 13 13 C 1.53247 * 109.01275 * 186.32612 * 12 10 9 14 14 N 1.46839 * 109.42154 * 303.38298 * 13 12 10 15 15 C 1.46897 * 111.00227 * 187.90262 * 14 13 12 16 16 C 1.50706 * 109.46645 * 65.42978 * 15 14 13 17 17 O 1.21291 * 120.00145 * 0.02562 * 16 15 14 18 18 N 1.34784 * 119.99591 * 179.97438 * 16 15 14 19 19 C 1.37100 * 119.99714 * 179.97438 * 18 16 15 20 20 H 1.07998 * 119.99874 * 0.02562 * 19 18 16 21 21 C 1.38943 * 119.99698 * 180.02562 * 19 18 16 22 22 N 1.31415 * 120.00064 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 120.00360 * 0.02562 * 21 19 18 24 24 H 1.48495 * 109.46999 * 89.99985 * 23 21 19 25 25 H 1.48503 * 109.47296 * 210.00165 * 23 21 19 26 26 H 1.48505 * 109.46965 * 330.00027 * 23 21 19 27 27 C 1.46837 * 111.47471 * 63.60080 * 14 13 12 28 28 C 1.52593 * 114.36100 * 220.64711 * 10 9 8 29 29 H 1.09004 * 109.46733 * 299.99664 * 1 2 3 30 30 H 1.08992 * 109.47068 * 59.99393 * 1 2 3 31 31 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46986 * 239.99882 * 2 1 3 33 33 H 1.09001 * 109.47375 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47045 * 300.00068 * 3 2 1 35 35 H 1.09000 * 109.47140 * 59.99976 * 3 2 1 36 36 H 1.08998 * 113.48799 * 321.36020 * 9 8 6 37 37 H 1.08998 * 113.49094 * 91.87056 * 9 8 6 38 38 H 1.09000 * 113.48756 * 268.12621 * 11 8 6 39 39 H 1.08996 * 113.49193 * 38.64934 * 11 8 6 40 40 H 1.09003 * 109.54416 * 306.18026 * 12 10 9 41 41 H 1.09000 * 109.55253 * 66.46265 * 12 10 9 42 42 H 1.09001 * 109.48207 * 183.40271 * 13 12 10 43 43 H 1.08996 * 109.48607 * 63.36641 * 13 12 10 44 44 H 1.09002 * 109.47237 * 185.42789 * 15 14 13 45 45 H 1.08998 * 109.47400 * 305.43535 * 15 14 13 46 46 H 0.96995 * 119.99880 * 0.02562 * 18 16 15 47 47 H 0.96998 * 119.99879 * 180.02562 * 22 21 19 48 48 H 1.08999 * 109.48243 * 176.40795 * 27 14 13 49 49 H 1.09004 * 109.48834 * 56.38812 * 27 14 13 50 50 H 1.08994 * 109.54931 * 293.70845 * 28 10 9 51 51 H 1.09003 * 109.54689 * 53.89665 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0207 -0.6940 1.2019 5 6 2.4120 -1.2474 2.1604 6 6 2.8894 -1.9225 3.3297 7 8 3.5443 -2.9412 3.2189 8 7 2.6129 -1.4288 4.5529 9 6 1.8867 -0.2646 5.0853 10 6 2.7841 -0.3371 6.3171 11 6 2.9109 -1.8137 5.9419 12 6 4.0822 0.4542 6.1868 13 6 4.9610 0.1769 7.4112 14 7 4.2180 0.5143 8.6320 15 6 5.0867 0.4407 9.8143 16 6 6.1517 1.5030 9.7220 17 8 6.1835 2.2483 8.7656 18 7 7.0681 1.6255 10.7027 19 6 8.0373 2.5915 10.6184 20 1 8.0661 3.2546 9.7665 21 6 8.9823 2.7174 11.6291 22 7 9.9110 3.6437 11.5487 23 14 8.9328 1.5700 13.1024 24 1 9.7576 0.3676 12.8212 25 1 9.4716 2.2721 14.2950 26 1 7.5299 1.1583 13.3622 27 6 3.0346 -0.3398 8.7945 28 6 2.0615 -0.0877 7.6378 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1301 1.4424 0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 2.0300 0.6425 4.4982 37 1 0.8375 -0.4678 5.2995 38 1 2.1439 -2.4438 6.3921 39 1 3.9169 -2.2112 6.0763 40 1 4.6080 0.1459 5.2831 41 1 3.8564 1.5193 6.1336 42 1 5.8640 0.7848 7.3557 43 1 5.2336 -0.8782 7.4317 44 1 4.4912 0.6004 10.7132 45 1 5.5565 -0.5418 9.8594 46 1 7.0423 1.0297 11.4676 47 1 10.5710 3.7313 12.2541 48 1 2.5444 -0.1058 9.7394 49 1 3.3386 -1.3866 8.7922 50 1 1.7123 0.9441 7.6732 51 1 1.2106 -0.7638 7.7212 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570051906.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:00 Heat of formation + Delta-G solvation = 24.586463 kcal Electronic energy + Delta-G solvation = -30025.530931 eV Core-core repulsion = 25927.750300 eV Total energy + Delta-G solvation = -4097.780631 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.36320 -39.10820 -38.36431 -36.81878 -36.67108 -33.96360 -32.74695 -32.02676 -31.63426 -30.91530 -28.74732 -27.70801 -26.81831 -26.26153 -24.22361 -23.63741 -23.31884 -21.88693 -20.94619 -19.36309 -18.46096 -18.25743 -18.18254 -16.74756 -16.30070 -16.26625 -15.91876 -15.43527 -15.11167 -15.04003 -14.86662 -14.57907 -14.33385 -14.03381 -13.82913 -13.69661 -13.37623 -13.14811 -12.94081 -12.76005 -12.65055 -12.52831 -12.50181 -12.21005 -12.10588 -11.96134 -11.89791 -11.83661 -11.46069 -11.17596 -11.14229 -10.96016 -10.66745 -10.59963 -10.53756 -10.46435 -10.45355 -10.21336 -9.97068 -9.52136 -9.03863 -8.54039 -8.17442 -7.93292 -6.30658 -3.81949 1.29347 1.90792 2.59422 3.02674 3.06954 3.15327 3.25839 3.59413 3.74338 3.84558 4.02358 4.10714 4.42694 4.44002 4.51917 4.59962 4.65364 4.75889 4.84143 4.85863 5.07342 5.10503 5.11548 5.18290 5.22598 5.27524 5.30053 5.34007 5.37931 5.41738 5.44255 5.47119 5.57300 5.60924 5.66850 5.68643 5.71890 5.76515 5.78562 5.89687 5.94112 5.97717 6.11199 6.32715 6.44617 6.92711 7.19309 7.33500 7.35693 7.59372 7.78955 8.15262 8.60839 8.95904 9.43175 9.84163 10.82466 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017554 B = 0.001928 C = 0.001848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.726095 B =14519.173452 C =15150.302850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.008 3.992 3 C -0.147 4.147 4 C -0.074 4.074 5 C -0.218 4.218 6 C 0.661 3.339 7 O -0.526 6.526 8 N -0.635 5.635 9 C 0.108 3.892 10 C -0.091 4.091 11 C 0.115 3.885 12 C -0.084 4.084 13 C 0.054 3.946 14 N -0.516 5.516 15 C 0.044 3.956 16 C 0.452 3.548 17 O -0.559 6.559 18 N -0.592 5.592 19 C -0.304 4.304 20 H 0.120 0.880 21 C 0.041 3.959 22 N -0.882 5.882 23 Si 0.879 3.121 24 H -0.271 1.271 25 H -0.277 1.277 26 H -0.269 1.269 27 C 0.056 3.944 28 C -0.094 4.094 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.100 0.900 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.065 0.935 41 H 0.082 0.918 42 H 0.106 0.894 43 H 0.023 0.977 44 H 0.090 0.910 45 H 0.048 0.952 46 H 0.370 0.630 47 H 0.273 0.727 48 H 0.076 0.924 49 H 0.031 0.969 50 H 0.082 0.918 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.156 -9.496 -14.898 28.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.010 4.010 3 C -0.204 4.204 4 C -0.076 4.076 5 C -0.220 4.220 6 C 0.451 3.549 7 O -0.404 6.404 8 N -0.369 5.369 9 C -0.015 4.015 10 C -0.092 4.092 11 C -0.007 4.007 12 C -0.121 4.121 13 C -0.073 4.073 14 N -0.240 5.240 15 C -0.087 4.087 16 C 0.238 3.762 17 O -0.440 6.440 18 N -0.231 5.231 19 C -0.432 4.432 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.522 5.522 23 Si 0.706 3.294 24 H -0.197 1.197 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.072 4.072 28 C -0.132 4.132 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.118 0.882 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.100 0.900 37 H 0.107 0.893 38 H 0.106 0.894 39 H 0.100 0.900 40 H 0.084 0.916 41 H 0.101 0.899 42 H 0.124 0.876 43 H 0.041 0.959 44 H 0.108 0.892 45 H 0.066 0.934 46 H 0.203 0.797 47 H 0.084 0.916 48 H 0.095 0.905 49 H 0.049 0.951 50 H 0.101 0.899 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -21.691 -9.044 -15.768 28.301 hybrid contribution 0.374 -1.764 1.406 2.286 sum -21.318 -10.808 -14.362 27.884 Atomic orbital electron populations 1.21840 0.92701 1.02753 1.02977 1.18528 0.96270 0.95368 0.90848 1.21850 1.01949 0.93593 1.03006 1.22622 0.94520 0.95164 0.95336 1.20513 1.03590 1.01464 0.96480 1.14045 0.79321 0.82336 0.79180 1.90870 1.39767 1.24022 1.85690 1.49355 1.54243 1.28948 1.04378 1.23101 0.96736 0.88930 0.92715 1.21849 0.97408 0.95190 0.94788 1.23146 1.02489 0.96915 0.78146 1.21243 0.92735 1.00465 0.97702 1.22266 0.98239 0.98444 0.88382 1.61373 1.07276 1.53509 1.01885 1.21860 0.95141 0.97655 0.94085 1.19668 0.83979 0.87654 0.84897 1.90524 1.74714 1.45943 1.32865 1.42226 1.27986 1.32565 1.20338 1.19419 1.04450 1.10679 1.08683 0.86276 1.25038 0.95997 0.97148 0.98016 1.69622 1.15940 1.32401 1.34219 0.86677 0.78434 0.81238 0.83062 1.19697 1.20204 1.19482 1.22102 0.91940 0.94554 0.98615 1.21399 0.96815 1.03143 0.91860 0.91905 0.91046 0.92060 0.88189 0.91834 0.91045 0.91821 0.90014 0.89305 0.89393 0.89976 0.91601 0.89912 0.87556 0.95931 0.89216 0.93443 0.79747 0.91643 0.90538 0.95112 0.89934 0.91115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 9.15 37.16 0.34 -0.33 16 2 C 0.01 0.05 3.30 -93.40 -0.31 -0.26 16 3 C -0.15 -0.78 9.15 37.16 0.34 -0.44 16 4 C -0.07 -0.73 12.56 -37.12 -0.47 -1.19 16 5 C -0.22 -2.67 13.42 -38.84 -0.52 -3.19 16 6 C 0.66 9.29 7.90 -14.33 -0.11 9.18 16 7 O -0.53 -9.29 17.86 5.26 0.09 -9.19 16 8 N -0.64 -7.22 3.48 -188.23 -0.66 -7.88 16 9 C 0.11 0.91 7.52 -8.32 -0.06 0.85 16 10 C -0.09 -0.87 0.85 -155.21 -0.13 -1.00 16 11 C 0.11 1.15 7.67 -8.17 -0.06 1.09 16 12 C -0.08 -1.05 5.27 -26.82 -0.14 -1.19 16 13 C 0.05 0.82 5.09 -3.73 -0.02 0.80 16 14 N -0.52 -7.61 4.35 -235.86 -1.03 -8.64 16 15 C 0.04 0.71 5.45 -4.97 -0.03 0.68 16 16 C 0.45 9.98 7.44 -10.98 -0.08 9.90 16 17 O -0.56 -14.42 13.89 5.55 0.08 -14.34 16 18 N -0.59 -13.85 5.09 -10.96 -0.06 -13.91 16 19 C -0.30 -8.49 10.16 -14.93 -0.15 -8.64 16 20 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16 21 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 22 N -0.88 -25.66 13.96 55.50 0.77 -24.89 16 23 Si 0.88 19.25 27.74 -169.99 -4.71 14.53 16 24 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 25 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 26 H -0.27 -5.35 6.52 56.52 0.37 -4.98 16 27 C 0.06 0.59 5.45 -3.73 -0.02 0.57 16 28 C -0.09 -0.79 5.34 -26.81 -0.14 -0.94 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.08 0.67 8.10 -51.93 -0.42 0.25 16 37 H 0.09 0.57 8.10 -51.93 -0.42 0.15 16 38 H 0.09 0.71 8.01 -51.93 -0.42 0.29 16 39 H 0.08 0.94 7.78 -51.93 -0.40 0.53 16 40 H 0.07 0.86 7.95 -51.93 -0.41 0.45 16 41 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.11 2.03 5.73 -51.93 -0.30 1.73 16 43 H 0.02 0.32 7.81 -51.93 -0.41 -0.08 16 44 H 0.09 1.25 7.96 -51.93 -0.41 0.84 16 45 H 0.05 0.68 8.13 -51.93 -0.42 0.26 16 46 H 0.37 7.61 5.76 -40.82 -0.24 7.38 16 47 H 0.27 7.34 8.31 -40.82 -0.34 7.01 16 48 H 0.08 0.73 7.97 -51.93 -0.41 0.32 16 49 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 50 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 51 H 0.07 0.43 8.02 -51.93 -0.42 0.02 16 LS Contribution 416.76 15.07 6.28 6.28 Total: -1.00 -35.11 416.76 -9.36 -44.47 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -8.46 Total: 6.67 kcal Atomic # 6 Polarization: 8.56 SS G_CDS: -1.67 Total: 6.89 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: -0.96 Total: -55.32 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: 0.17 Total: -23.53 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -4.71 Total: 14.53 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -35.11 -9.36 -44.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570051906.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.055 kcal (2) G-P(sol) polarization free energy of solvation -35.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds