Wall clock time and date at job start Wed Apr 1 2020 04:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47415 * 2 1 4 4 C 1.47206 * 109.47021 * 120.00065 * 2 1 3 5 5 C 2.64598 * 109.47129 * 120.00201 * 2 1 3 6 6 C 4.07804 * 109.47170 * 120.00123 * 2 1 3 7 7 O 1.21615 * 120.00074 * 87.08674 * 6 5 4 8 8 N 1.34777 * 120.00084 * 267.08695 * 6 5 4 9 9 C 1.47180 * 135.99309 * 359.62706 * 8 6 5 10 10 C 1.52572 * 87.95125 * 206.66967 * 9 8 6 11 11 C 1.47178 * 135.99055 * 180.02562 * 8 6 5 12 12 C 1.52585 * 114.00274 * 88.37384 * 10 9 8 13 13 C 1.53247 * 109.01275 * 186.32612 * 12 10 9 14 14 N 1.46839 * 109.42154 * 303.38298 * 13 12 10 15 15 C 1.46897 * 111.00227 * 187.90262 * 14 13 12 16 16 C 1.50706 * 109.46645 * 65.42978 * 15 14 13 17 17 O 1.21291 * 120.00145 * 0.02562 * 16 15 14 18 18 N 1.34784 * 119.99591 * 179.97438 * 16 15 14 19 19 C 1.37100 * 119.99714 * 179.97438 * 18 16 15 20 20 H 1.07998 * 119.99874 * 0.02562 * 19 18 16 21 21 C 1.38943 * 119.99698 * 180.02562 * 19 18 16 22 22 N 1.31415 * 120.00064 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 120.00360 * 0.02562 * 21 19 18 24 24 H 1.48495 * 109.46999 * 89.99985 * 23 21 19 25 25 H 1.48503 * 109.47296 * 210.00165 * 23 21 19 26 26 H 1.48505 * 109.46965 * 330.00027 * 23 21 19 27 27 C 1.46837 * 111.47471 * 63.60080 * 14 13 12 28 28 C 1.52593 * 114.36100 * 220.64711 * 10 9 8 29 29 H 1.09004 * 109.46733 * 299.99664 * 1 2 3 30 30 H 1.08992 * 109.47068 * 59.99393 * 1 2 3 31 31 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46986 * 239.99882 * 2 1 3 33 33 H 1.09001 * 109.47375 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47045 * 300.00068 * 3 2 1 35 35 H 1.09000 * 109.47140 * 59.99976 * 3 2 1 36 36 H 1.08998 * 113.48799 * 321.36020 * 9 8 6 37 37 H 1.08998 * 113.49094 * 91.87056 * 9 8 6 38 38 H 1.09000 * 113.48756 * 268.12621 * 11 8 6 39 39 H 1.08996 * 113.49193 * 38.64934 * 11 8 6 40 40 H 1.09003 * 109.54416 * 306.18026 * 12 10 9 41 41 H 1.09000 * 109.55253 * 66.46265 * 12 10 9 42 42 H 1.09001 * 109.48207 * 183.40271 * 13 12 10 43 43 H 1.08996 * 109.48607 * 63.36641 * 13 12 10 44 44 H 1.09002 * 109.47237 * 185.42789 * 15 14 13 45 45 H 1.08998 * 109.47400 * 305.43535 * 15 14 13 46 46 H 0.96995 * 119.99880 * 0.02562 * 18 16 15 47 47 H 0.96998 * 119.99879 * 180.02562 * 22 21 19 48 48 H 1.08999 * 109.48243 * 176.40795 * 27 14 13 49 49 H 1.09004 * 109.48834 * 56.38812 * 27 14 13 50 50 H 1.08994 * 109.54931 * 293.70845 * 28 10 9 51 51 H 1.09003 * 109.54689 * 53.89665 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0207 -0.6940 1.2019 5 6 2.4120 -1.2474 2.1604 6 6 2.8894 -1.9225 3.3297 7 8 3.5443 -2.9412 3.2189 8 7 2.6129 -1.4288 4.5529 9 6 1.8867 -0.2646 5.0853 10 6 2.7841 -0.3371 6.3171 11 6 2.9109 -1.8137 5.9419 12 6 4.0822 0.4542 6.1868 13 6 4.9610 0.1769 7.4112 14 7 4.2180 0.5143 8.6320 15 6 5.0867 0.4407 9.8143 16 6 6.1517 1.5030 9.7220 17 8 6.1835 2.2483 8.7656 18 7 7.0681 1.6255 10.7027 19 6 8.0373 2.5915 10.6184 20 1 8.0661 3.2546 9.7665 21 6 8.9823 2.7174 11.6291 22 7 9.9110 3.6437 11.5487 23 14 8.9328 1.5700 13.1024 24 1 9.7576 0.3676 12.8212 25 1 9.4716 2.2721 14.2950 26 1 7.5299 1.1583 13.3622 27 6 3.0346 -0.3398 8.7945 28 6 2.0615 -0.0877 7.6378 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1301 1.4424 0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 2.0300 0.6425 4.4982 37 1 0.8375 -0.4678 5.2995 38 1 2.1439 -2.4438 6.3921 39 1 3.9169 -2.2112 6.0763 40 1 4.6080 0.1459 5.2831 41 1 3.8564 1.5193 6.1336 42 1 5.8640 0.7848 7.3557 43 1 5.2336 -0.8782 7.4317 44 1 4.4912 0.6004 10.7132 45 1 5.5565 -0.5418 9.8594 46 1 7.0423 1.0297 11.4676 47 1 10.5710 3.7313 12.2541 48 1 2.5444 -0.1058 9.7394 49 1 3.3386 -1.3866 8.7922 50 1 1.7123 0.9441 7.6732 51 1 1.2106 -0.7638 7.7212 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570051906.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:59 Heat of formation + Delta-G solvation = -0.803867 kcal Electronic energy + Delta-G solvation = -30026.631938 eV Core-core repulsion = 25927.750300 eV Total energy + Delta-G solvation = -4098.881638 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.24627 -40.51904 -39.69077 -37.90850 -37.37306 -35.92815 -33.83459 -33.62020 -32.83909 -31.88850 -29.87870 -28.08626 -27.94929 -27.31477 -25.76540 -24.53892 -24.25811 -22.81857 -21.76116 -21.24419 -20.18977 -19.29909 -19.04163 -17.76617 -17.66305 -17.06170 -16.88976 -16.86484 -16.42916 -16.29556 -15.63527 -15.61536 -15.37635 -15.31226 -15.04916 -14.85693 -14.44557 -14.38893 -14.08856 -13.89361 -13.78302 -13.57754 -13.20621 -13.11718 -13.03933 -12.93407 -12.85111 -12.51084 -12.47117 -12.40322 -12.36838 -12.08653 -11.97063 -11.95418 -11.63878 -11.42962 -11.36893 -11.32866 -11.23975 -11.12302 -10.30419 -10.20265 -9.91344 -9.11986 -8.39917 -6.00241 0.38197 1.08849 1.30453 1.36107 1.44883 1.74412 1.99364 2.23912 2.34146 2.67100 2.85124 3.12237 3.16579 3.29066 3.65093 3.73903 3.91566 4.00206 4.01269 4.13858 4.14543 4.26876 4.29610 4.33931 4.41412 4.43409 4.47510 4.54035 4.57564 4.64132 4.70689 4.72683 4.77087 4.77807 4.89703 4.91583 4.92332 5.04116 5.09157 5.12462 5.19537 5.24567 5.29600 5.32235 5.42103 5.55300 5.93372 6.08055 6.11753 6.32684 6.42774 6.62291 6.79987 6.91015 7.42778 8.00815 8.77838 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017554 B = 0.001928 C = 0.001848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.726095 B =14519.173452 C =15150.302850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.003 3.997 3 C -0.145 4.145 4 C -0.041 4.041 5 C -0.272 4.272 6 C 0.654 3.346 7 O -0.580 6.580 8 N -0.638 5.638 9 C 0.115 3.885 10 C -0.083 4.083 11 C 0.112 3.888 12 C -0.077 4.077 13 C 0.060 3.940 14 N -0.534 5.534 15 C 0.055 3.945 16 C 0.450 3.550 17 O -0.604 6.604 18 N -0.594 5.594 19 C -0.325 4.325 20 H 0.054 0.946 21 C -0.017 4.017 22 N -0.936 5.936 23 Si 0.965 3.035 24 H -0.260 1.260 25 H -0.276 1.276 26 H -0.229 1.229 27 C 0.052 3.948 28 C -0.086 4.086 29 H 0.060 0.940 30 H 0.093 0.907 31 H 0.057 0.943 32 H 0.117 0.883 33 H 0.051 0.949 34 H 0.095 0.905 35 H 0.059 0.941 36 H 0.081 0.919 37 H 0.126 0.874 38 H 0.121 0.879 39 H 0.062 0.938 40 H 0.049 0.951 41 H 0.068 0.932 42 H 0.054 0.946 43 H 0.029 0.971 44 H 0.125 0.875 45 H 0.073 0.927 46 H 0.389 0.611 47 H 0.278 0.722 48 H 0.097 0.903 49 H 0.045 0.955 50 H 0.081 0.919 51 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.169 -11.551 -13.535 31.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.015 4.015 3 C -0.203 4.203 4 C -0.043 4.043 5 C -0.275 4.275 6 C 0.445 3.555 7 O -0.462 6.462 8 N -0.370 5.370 9 C -0.007 4.007 10 C -0.084 4.084 11 C -0.009 4.009 12 C -0.115 4.115 13 C -0.068 4.068 14 N -0.260 5.260 15 C -0.076 4.076 16 C 0.238 3.762 17 O -0.488 6.488 18 N -0.236 5.236 19 C -0.454 4.454 20 H 0.072 0.928 21 C -0.216 4.216 22 N -0.577 5.577 23 Si 0.785 3.215 24 H -0.185 1.185 25 H -0.201 1.201 26 H -0.152 1.152 27 C -0.075 4.075 28 C -0.124 4.124 29 H 0.079 0.921 30 H 0.112 0.888 31 H 0.077 0.923 32 H 0.134 0.866 33 H 0.070 0.930 34 H 0.114 0.886 35 H 0.078 0.922 36 H 0.099 0.901 37 H 0.143 0.857 38 H 0.139 0.861 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.087 0.913 42 H 0.073 0.927 43 H 0.047 0.953 44 H 0.143 0.857 45 H 0.091 0.909 46 H 0.224 0.776 47 H 0.087 0.913 48 H 0.115 0.885 49 H 0.063 0.937 50 H 0.099 0.901 51 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -25.762 -11.084 -14.387 31.520 hybrid contribution 1.610 -0.978 0.803 2.048 sum -24.152 -12.061 -13.584 30.221 Atomic orbital electron populations 1.21844 0.91077 1.02931 1.04058 1.18885 0.97504 0.95529 0.89539 1.21865 1.01253 0.93099 1.04041 1.23502 0.92382 0.93517 0.94948 1.20524 1.05927 1.03511 0.97522 1.14327 0.78845 0.81939 0.80366 1.90816 1.42414 1.26404 1.86602 1.49511 1.53694 1.29552 1.04226 1.23301 0.98033 0.87963 0.91360 1.21658 0.95969 0.94260 0.96471 1.23357 1.02587 0.97430 0.77534 1.21088 0.94265 1.00224 0.95923 1.22035 0.97084 0.97577 0.90103 1.61348 1.08097 1.55645 1.00885 1.21813 0.93867 0.95871 0.96052 1.21003 0.84144 0.87841 0.83229 1.90517 1.75804 1.47985 1.34521 1.42061 1.27625 1.32243 1.21708 1.18982 1.07057 1.11756 1.07621 0.92765 1.26118 0.94608 0.99081 1.01761 1.69811 1.17097 1.34909 1.35924 0.85366 0.80842 0.78267 0.77051 1.18481 1.20080 1.15173 1.22307 0.90201 0.94467 1.00497 1.21435 0.97139 1.04193 0.89636 0.92055 0.88780 0.92344 0.86552 0.92983 0.88648 0.92190 0.90070 0.85651 0.86135 0.91966 0.93209 0.91302 0.92712 0.95263 0.85750 0.90932 0.77573 0.91251 0.88487 0.93715 0.90054 0.87118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 9.15 71.98 0.66 -0.30 16 2 C 0.00 0.03 3.30 -12.60 -0.04 -0.01 16 3 C -0.15 -1.29 9.15 71.98 0.66 -0.64 16 4 C -0.04 -0.78 12.56 31.13 0.39 -0.39 16 5 C -0.27 -6.84 13.42 30.02 0.40 -6.43 16 6 C 0.65 19.09 7.90 85.49 0.68 19.76 16 7 O -0.58 -21.71 17.86 -4.08 -0.07 -21.78 16 8 N -0.64 -14.15 3.48 -867.67 -3.02 -17.17 16 9 C 0.11 1.68 7.52 83.24 0.63 2.31 16 10 C -0.08 -1.40 0.85 -52.64 -0.04 -1.45 16 11 C 0.11 2.04 7.67 83.34 0.64 2.68 16 12 C -0.08 -1.99 5.27 30.54 0.16 -1.83 16 13 C 0.06 1.85 5.09 86.40 0.44 2.29 16 14 N -0.53 -14.89 4.35 -900.11 -3.92 -18.81 16 15 C 0.06 1.63 5.45 85.56 0.47 2.10 16 16 C 0.45 20.14 7.44 87.66 0.65 20.80 16 17 O -0.60 -33.13 13.89 -3.07 -0.04 -33.17 16 18 N -0.59 -27.97 5.09 -306.97 -1.56 -29.53 16 19 C -0.32 -19.11 10.16 84.04 0.85 -18.25 16 20 H 0.05 3.81 7.39 -2.91 -0.02 3.78 16 21 C -0.02 -0.97 5.50 84.92 0.47 -0.51 16 22 N -0.94 -56.94 13.96 21.66 0.30 -56.64 16 23 Si 0.96 38.94 27.74 68.60 1.90 40.85 16 24 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 25 H -0.28 -11.06 7.11 99.48 0.71 -10.36 16 26 H -0.23 -7.66 6.52 99.48 0.65 -7.02 16 27 C 0.05 0.88 5.45 86.40 0.47 1.35 16 28 C -0.09 -1.09 5.34 30.54 0.16 -0.93 16 29 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 35 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.08 1.23 8.10 -2.39 -0.02 1.21 16 37 H 0.13 1.03 8.10 -2.39 -0.02 1.01 16 38 H 0.12 1.46 8.01 -2.39 -0.02 1.45 16 39 H 0.06 1.40 7.78 -2.39 -0.02 1.38 16 40 H 0.05 1.41 7.95 -2.39 -0.02 1.39 16 41 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.05 2.26 5.73 -2.39 -0.01 2.25 16 43 H 0.03 0.84 7.81 -2.39 -0.02 0.82 16 44 H 0.12 2.90 7.96 -2.39 -0.02 2.88 16 45 H 0.07 1.84 8.13 -2.39 -0.02 1.82 16 46 H 0.39 15.10 5.76 -92.71 -0.53 14.57 16 47 H 0.28 15.47 8.31 -92.71 -0.77 14.70 16 48 H 0.10 1.31 7.97 -2.39 -0.02 1.29 16 49 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 50 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 51 H 0.11 0.64 8.02 -2.39 -0.02 0.62 16 Total: -1.00 -87.64 416.76 1.56 -86.08 By element: Atomic # 1 Polarization: 29.30 SS G_CDS: 0.34 Total: 29.63 kcal Atomic # 6 Polarization: 12.92 SS G_CDS: 7.64 Total: 20.56 kcal Atomic # 7 Polarization: -113.96 SS G_CDS: -8.20 Total: -122.16 kcal Atomic # 8 Polarization: -54.84 SS G_CDS: -0.12 Total: -54.96 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 1.90 Total: 40.85 kcal Total: -87.64 1.56 -86.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570051906.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.272 kcal (2) G-P(sol) polarization free energy of solvation -87.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds