Wall clock time and date at job start Wed Apr 1 2020 05:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.47104 * 2 1 4 4 C 1.52992 * 109.47387 * 120.00242 * 2 1 3 5 5 H 1.09000 * 109.46890 * 54.39762 * 4 2 1 6 6 N 1.46500 * 109.47427 * 294.39744 * 4 2 1 7 7 C 1.34779 * 119.99861 * 84.99543 * 6 4 2 8 8 N 1.34772 * 120.00085 * 180.02562 * 7 6 4 9 9 O 1.21583 * 119.99957 * 0.02562 * 7 6 4 10 10 C 1.50701 * 109.47190 * 174.39816 * 4 2 1 11 11 O 1.21278 * 120.00050 * 96.48175 * 10 4 2 12 12 N 1.34774 * 120.00065 * 276.47654 * 10 4 2 13 13 C 1.46506 * 120.00134 * 175.07512 * 12 10 4 14 14 H 1.08995 * 109.46746 * 325.00612 * 13 12 10 15 15 C 1.52996 * 109.46939 * 205.00283 * 13 12 10 16 16 C 1.53001 * 109.47333 * 65.00271 * 15 13 12 17 17 C 1.50698 * 109.46980 * 179.97438 * 16 15 13 18 18 H 1.07994 * 120.00559 * 359.97438 * 17 16 15 19 19 C 1.37885 * 119.99590 * 180.02562 * 17 16 15 20 20 N 1.31508 * 120.00059 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99641 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47671 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47399 * 119.99935 * 21 19 17 24 24 H 1.48507 * 109.46712 * 239.99454 * 21 19 17 25 25 C 1.50705 * 109.46489 * 85.00480 * 13 12 10 26 26 C 1.38229 * 120.00255 * 39.73175 * 25 13 12 27 27 C 1.38244 * 119.99634 * 179.78869 * 26 25 13 28 28 C 1.38235 * 120.00018 * 0.43514 * 27 26 25 29 29 C 1.38238 * 119.99733 * 359.81558 * 28 27 26 30 30 C 1.38229 * 120.00326 * 359.97438 * 29 28 27 31 31 H 1.09006 * 109.47010 * 300.00050 * 1 2 3 32 32 H 1.08999 * 109.47280 * 59.99645 * 1 2 3 33 33 H 1.08995 * 109.47303 * 179.97438 * 1 2 3 34 34 H 1.09005 * 109.46942 * 240.00494 * 2 1 3 35 35 H 1.09000 * 109.46707 * 182.41894 * 3 2 1 36 36 H 1.08994 * 109.47118 * 302.41628 * 3 2 1 37 37 H 1.08994 * 109.47000 * 62.42011 * 3 2 1 38 38 H 0.97004 * 120.00401 * 265.00390 * 6 4 2 39 39 H 0.97004 * 120.00177 * 0.02562 * 8 7 6 40 40 H 0.97005 * 120.00331 * 179.97438 * 8 7 6 41 41 H 0.97002 * 120.00030 * 355.35348 * 12 10 4 42 42 H 1.09003 * 109.46606 * 185.00109 * 15 13 12 43 43 H 1.08995 * 109.47324 * 304.99773 * 15 13 12 44 44 H 1.08994 * 109.47060 * 299.99822 * 16 15 13 45 45 H 1.09001 * 109.46967 * 59.99689 * 16 15 13 46 46 H 0.97000 * 120.00276 * 180.02562 * 20 19 17 47 47 H 1.08001 * 120.00275 * 359.97438 * 26 25 13 48 48 H 1.08004 * 119.99484 * 180.27300 * 27 26 25 49 49 H 1.07994 * 120.00091 * 179.84014 * 28 27 26 50 50 H 1.07998 * 119.99527 * 180.02562 * 29 28 27 51 51 H 1.08005 * 120.00327 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.5971 -1.7159 1.3006 6 7 1.6650 0.0427 2.4416 7 6 0.4489 -0.1287 2.9968 8 7 0.1036 0.5745 4.0934 9 8 -0.3367 -0.9176 2.5082 10 6 3.5406 -0.8425 1.1817 11 8 4.2407 -0.0307 1.7490 12 7 4.1047 -1.8530 0.4910 13 6 5.5603 -1.9106 0.3346 14 1 5.9565 -0.8990 0.2464 15 6 5.9067 -2.7058 -0.9257 16 6 5.3966 -1.9561 -2.1581 17 6 5.7384 -2.7392 -3.3995 18 1 6.2669 -3.6774 -3.3178 19 6 5.3772 -2.2571 -4.6398 20 7 4.7340 -1.1144 -4.7394 21 14 5.8002 -3.2280 -6.1785 22 1 6.5193 -4.4703 -5.7980 23 1 4.5513 -3.5800 -6.9007 24 1 6.6667 -2.4053 -7.0603 25 6 6.1683 -2.5853 1.5373 26 6 5.5441 -3.6803 2.1047 27 6 6.1042 -4.3018 3.2052 28 6 7.2837 -3.8226 3.7437 29 6 7.9051 -2.7243 3.1794 30 6 7.3474 -2.1055 2.0763 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8933 -0.5138 -0.8901 35 1 3.1291 1.4428 -0.0434 36 1 1.6418 1.9687 -0.8675 37 1 1.7125 1.9437 0.9108 38 1 2.2918 0.6720 2.8315 39 1 0.7302 1.2042 4.4830 40 1 -0.7718 0.4514 4.4928 41 1 3.5467 -2.5400 0.0940 42 1 6.9880 -2.8247 -0.9945 43 1 5.4356 -3.6875 -0.8769 44 1 4.3153 -1.8372 -2.0893 45 1 5.8677 -0.9744 -2.2069 46 1 4.4796 -0.7754 -5.6119 47 1 4.6204 -4.0522 1.6864 48 1 5.6187 -5.1601 3.6459 49 1 7.7199 -4.3065 4.6050 50 1 8.8269 -2.3502 3.5998 51 1 7.8331 -1.2477 1.6351 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001636541548.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:00 Heat of formation + Delta-G solvation = -64.256613 kcal Electronic energy + Delta-G solvation = -31657.054109 eV Core-core repulsion = 27555.420953 eV Total energy + Delta-G solvation = -4101.633156 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.73969 -39.66637 -38.66673 -36.26744 -35.54993 -33.97165 -33.22261 -32.42727 -31.65771 -30.71953 -30.37225 -27.64816 -26.94034 -26.12225 -23.65253 -22.50191 -21.63537 -21.42086 -20.81966 -20.02866 -19.57357 -18.65102 -17.61538 -16.94028 -16.43751 -16.28467 -16.11994 -15.70576 -15.21418 -14.98388 -14.49786 -14.45465 -14.40822 -14.02533 -13.85739 -13.49205 -13.37379 -13.23180 -13.07116 -12.72013 -12.57375 -12.17539 -12.12732 -11.88524 -11.77279 -11.31214 -11.16489 -11.00199 -10.97041 -10.89324 -10.71466 -10.67300 -10.55169 -10.32187 -10.02810 -9.75927 -9.66384 -9.60516 -9.18158 -9.02268 -8.83762 -8.75237 -8.46284 -8.39357 -6.04602 -4.07418 1.50034 1.55380 2.59077 2.80009 3.12067 3.28203 3.36546 3.39914 3.48755 3.97079 4.38518 4.42306 4.77145 4.89271 4.97647 5.02308 5.04122 5.11061 5.25488 5.30767 5.31946 5.52779 5.57842 5.63250 5.74645 5.76855 5.83753 5.89104 6.05451 6.09259 6.10878 6.16454 6.21370 6.29370 6.37003 6.47808 6.51952 6.53751 6.58107 6.60536 6.62725 6.69841 6.78522 6.91863 6.92821 7.14883 7.60685 7.68489 7.71785 7.86374 7.93993 8.34501 8.35783 8.53064 8.99447 9.57343 11.06106 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007006 B = 0.004097 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3995.721697 B = 6832.549886 C = 9991.997981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.103 4.103 3 C -0.143 4.143 4 C 0.153 3.847 5 H 0.107 0.893 6 N -0.723 5.723 7 C 0.708 3.292 8 N -0.869 5.869 9 O -0.589 6.589 10 C 0.517 3.483 11 O -0.539 6.539 12 N -0.704 5.704 13 C 0.184 3.816 14 H 0.093 0.907 15 C -0.114 4.114 16 C 0.025 3.975 17 C -0.523 4.523 18 H 0.055 0.945 19 C 0.059 3.941 20 N -0.892 5.892 21 Si 0.889 3.111 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 C -0.078 4.078 26 C -0.107 4.107 27 C -0.124 4.124 28 C -0.130 4.130 29 C -0.121 4.121 30 C -0.106 4.106 31 H 0.056 0.944 32 H 0.049 0.951 33 H 0.060 0.940 34 H 0.091 0.909 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.051 0.949 38 H 0.405 0.595 39 H 0.396 0.604 40 H 0.414 0.586 41 H 0.404 0.596 42 H 0.067 0.933 43 H 0.057 0.943 44 H 0.020 0.980 45 H 0.016 0.984 46 H 0.260 0.740 47 H 0.117 0.883 48 H 0.117 0.883 49 H 0.116 0.884 50 H 0.118 0.882 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.054 1.722 18.604 19.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.123 4.123 3 C -0.201 4.201 4 C 0.043 3.957 5 H 0.125 0.875 6 N -0.381 5.381 7 C 0.406 3.594 8 N -0.437 5.437 9 O -0.468 6.468 10 C 0.302 3.698 11 O -0.417 6.417 12 N -0.354 5.354 13 C 0.080 3.920 14 H 0.111 0.889 15 C -0.152 4.152 16 C -0.012 4.012 17 C -0.561 4.561 18 H 0.073 0.927 19 C -0.142 4.142 20 N -0.531 5.531 21 Si 0.717 3.283 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.211 1.211 25 C -0.079 4.079 26 C -0.125 4.125 27 C -0.142 4.142 28 C -0.148 4.148 29 C -0.140 4.140 30 C -0.124 4.124 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.109 0.891 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.241 0.759 39 H 0.224 0.776 40 H 0.245 0.755 41 H 0.239 0.761 42 H 0.086 0.914 43 H 0.076 0.924 44 H 0.038 0.962 45 H 0.034 0.966 46 H 0.070 0.930 47 H 0.135 0.865 48 H 0.135 0.865 49 H 0.134 0.866 50 H 0.136 0.864 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.157 1.714 18.313 18.857 hybrid contribution 0.237 -0.248 -0.577 0.672 sum -3.919 1.465 17.736 18.223 Atomic orbital electron populations 1.21819 0.93536 1.02496 1.01201 1.21495 0.97222 0.97280 0.96280 1.21773 1.01626 0.95261 1.01405 1.20713 0.91650 0.97445 0.85877 0.87545 1.44764 1.15920 1.46740 1.30686 1.15829 0.82190 0.81112 0.80252 1.42963 1.21540 1.47631 1.31601 1.90982 1.51315 1.39904 1.64550 1.20420 0.89769 0.81149 0.78445 1.90656 1.63933 1.41893 1.45184 1.45953 1.08119 1.27089 1.54277 1.20146 0.78753 1.00608 0.92533 0.88854 1.21998 1.01520 0.98602 0.93045 1.19096 0.96566 0.95319 0.90231 1.21247 1.36984 1.06668 0.91203 0.92660 1.24994 0.95150 0.94985 0.99095 1.69963 1.39613 1.19396 1.24085 0.86584 0.78145 0.80187 0.83373 1.19762 1.21018 1.21055 1.20370 0.95225 0.95565 0.96738 1.20919 0.99810 0.95621 0.96192 1.21077 0.96295 0.99949 0.96837 1.21056 0.96229 0.97309 1.00227 1.21072 0.99875 0.96413 0.96597 1.21017 0.95687 0.99732 0.96002 0.92486 0.93221 0.92089 0.89065 0.92121 0.92427 0.93006 0.75866 0.77607 0.75453 0.76109 0.91431 0.92444 0.96208 0.96586 0.93047 0.86461 0.86537 0.86641 0.86407 0.86050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.78 7.81 37.16 0.29 -1.49 16 2 C -0.10 -1.40 2.73 -90.62 -0.25 -1.65 16 3 C -0.14 -1.94 8.79 37.16 0.33 -1.62 16 4 C 0.15 2.00 2.34 -69.09 -0.16 1.84 16 5 H 0.11 1.41 7.58 -51.93 -0.39 1.01 16 6 N -0.72 -8.38 3.96 -59.82 -0.24 -8.61 16 7 C 0.71 8.35 7.43 -86.92 -0.65 7.70 16 8 N -0.87 -6.47 8.88 27.63 0.25 -6.22 16 9 O -0.59 -9.00 14.32 5.29 0.08 -8.93 16 10 C 0.52 7.68 6.18 -10.99 -0.07 7.61 16 11 O -0.54 -9.15 15.30 5.56 0.09 -9.06 16 12 N -0.70 -10.39 3.76 -54.93 -0.21 -10.60 16 13 C 0.18 2.98 2.13 -69.08 -0.15 2.84 16 14 H 0.09 1.68 7.51 -51.93 -0.39 1.29 16 15 C -0.11 -2.11 4.67 -26.73 -0.12 -2.24 16 16 C 0.02 0.59 4.86 -27.88 -0.14 0.45 16 17 C -0.52 -14.01 9.11 -34.44 -0.31 -14.32 16 18 H 0.06 1.45 7.74 -52.49 -0.41 1.05 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 20 N -0.89 -25.76 13.29 55.43 0.74 -25.02 16 21 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 22 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 C -0.08 -1.17 4.91 -104.62 -0.51 -1.68 16 26 C -0.11 -1.48 9.33 -39.58 -0.37 -1.85 16 27 C -0.12 -1.53 10.05 -39.58 -0.40 -1.93 16 28 C -0.13 -1.54 10.05 -39.58 -0.40 -1.94 16 29 C -0.12 -1.51 10.05 -39.58 -0.40 -1.91 16 30 C -0.11 -1.51 9.67 -39.58 -0.38 -1.89 16 31 H 0.06 0.78 5.63 -51.93 -0.29 0.49 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.85 7.88 -51.93 -0.41 0.45 16 34 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 35 H 0.06 0.93 7.18 -51.93 -0.37 0.56 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.05 0.63 7.38 -51.93 -0.38 0.25 16 38 H 0.41 4.38 7.78 -40.82 -0.32 4.07 16 39 H 0.40 1.94 8.84 -40.82 -0.36 1.58 16 40 H 0.41 2.55 8.93 -40.82 -0.36 2.19 16 41 H 0.40 5.44 8.60 -40.82 -0.35 5.09 16 42 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.02 0.48 7.75 -51.93 -0.40 0.08 16 45 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 47 H 0.12 1.49 7.71 -52.49 -0.40 1.09 16 48 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 49 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 50 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 51 H 0.12 1.63 8.04 -52.48 -0.42 1.21 16 LS Contribution 415.81 15.07 6.27 6.27 Total: -1.00 -32.85 415.81 -10.05 -42.90 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: -8.21 Total: 13.75 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: -3.78 Total: -10.53 kcal Atomic # 7 Polarization: -50.99 SS G_CDS: 0.54 Total: -50.45 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: 0.16 Total: -17.99 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -32.85 -10.05 -42.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001636541548.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.359 kcal (2) G-P(sol) polarization free energy of solvation -32.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds