Wall clock time and date at job start Wed Apr 1 2020 05:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.47104 * 2 1 4 4 C 1.52992 * 109.47387 * 120.00242 * 2 1 3 5 5 H 1.09000 * 109.46890 * 54.39762 * 4 2 1 6 6 N 1.46500 * 109.47427 * 294.39744 * 4 2 1 7 7 C 1.34779 * 119.99861 * 84.99543 * 6 4 2 8 8 N 1.34772 * 120.00085 * 180.02562 * 7 6 4 9 9 O 1.21583 * 119.99957 * 0.02562 * 7 6 4 10 10 C 1.50701 * 109.47190 * 174.39816 * 4 2 1 11 11 O 1.21278 * 120.00050 * 96.48175 * 10 4 2 12 12 N 1.34774 * 120.00065 * 276.47654 * 10 4 2 13 13 C 1.46506 * 120.00134 * 175.07512 * 12 10 4 14 14 H 1.08995 * 109.46746 * 325.00612 * 13 12 10 15 15 C 1.52996 * 109.46939 * 205.00283 * 13 12 10 16 16 C 1.53001 * 109.47333 * 65.00271 * 15 13 12 17 17 C 1.50698 * 109.46980 * 179.97438 * 16 15 13 18 18 H 1.07994 * 120.00559 * 359.97438 * 17 16 15 19 19 C 1.37885 * 119.99590 * 180.02562 * 17 16 15 20 20 N 1.31508 * 120.00059 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99641 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47671 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47399 * 119.99935 * 21 19 17 24 24 H 1.48507 * 109.46712 * 239.99454 * 21 19 17 25 25 C 1.50705 * 109.46489 * 85.00480 * 13 12 10 26 26 C 1.38229 * 120.00255 * 39.73175 * 25 13 12 27 27 C 1.38244 * 119.99634 * 179.78869 * 26 25 13 28 28 C 1.38235 * 120.00018 * 0.43514 * 27 26 25 29 29 C 1.38238 * 119.99733 * 359.81558 * 28 27 26 30 30 C 1.38229 * 120.00326 * 359.97438 * 29 28 27 31 31 H 1.09006 * 109.47010 * 300.00050 * 1 2 3 32 32 H 1.08999 * 109.47280 * 59.99645 * 1 2 3 33 33 H 1.08995 * 109.47303 * 179.97438 * 1 2 3 34 34 H 1.09005 * 109.46942 * 240.00494 * 2 1 3 35 35 H 1.09000 * 109.46707 * 182.41894 * 3 2 1 36 36 H 1.08994 * 109.47118 * 302.41628 * 3 2 1 37 37 H 1.08994 * 109.47000 * 62.42011 * 3 2 1 38 38 H 0.97004 * 120.00401 * 265.00390 * 6 4 2 39 39 H 0.97004 * 120.00177 * 0.02562 * 8 7 6 40 40 H 0.97005 * 120.00331 * 179.97438 * 8 7 6 41 41 H 0.97002 * 120.00030 * 355.35348 * 12 10 4 42 42 H 1.09003 * 109.46606 * 185.00109 * 15 13 12 43 43 H 1.08995 * 109.47324 * 304.99773 * 15 13 12 44 44 H 1.08994 * 109.47060 * 299.99822 * 16 15 13 45 45 H 1.09001 * 109.46967 * 59.99689 * 16 15 13 46 46 H 0.97000 * 120.00276 * 180.02562 * 20 19 17 47 47 H 1.08001 * 120.00275 * 359.97438 * 26 25 13 48 48 H 1.08004 * 119.99484 * 180.27300 * 27 26 25 49 49 H 1.07994 * 120.00091 * 179.84014 * 28 27 26 50 50 H 1.07998 * 119.99527 * 180.02562 * 29 28 27 51 51 H 1.08005 * 120.00327 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.5971 -1.7159 1.3006 6 7 1.6650 0.0427 2.4416 7 6 0.4489 -0.1287 2.9968 8 7 0.1036 0.5745 4.0934 9 8 -0.3367 -0.9176 2.5082 10 6 3.5406 -0.8425 1.1817 11 8 4.2407 -0.0307 1.7490 12 7 4.1047 -1.8530 0.4910 13 6 5.5603 -1.9106 0.3346 14 1 5.9565 -0.8990 0.2464 15 6 5.9067 -2.7058 -0.9257 16 6 5.3966 -1.9561 -2.1581 17 6 5.7384 -2.7392 -3.3995 18 1 6.2669 -3.6774 -3.3178 19 6 5.3772 -2.2571 -4.6398 20 7 4.7340 -1.1144 -4.7394 21 14 5.8002 -3.2280 -6.1785 22 1 6.5193 -4.4703 -5.7980 23 1 4.5513 -3.5800 -6.9007 24 1 6.6667 -2.4053 -7.0603 25 6 6.1683 -2.5853 1.5373 26 6 5.5441 -3.6803 2.1047 27 6 6.1042 -4.3018 3.2052 28 6 7.2837 -3.8226 3.7437 29 6 7.9051 -2.7243 3.1794 30 6 7.3474 -2.1055 2.0763 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8933 -0.5138 -0.8901 35 1 3.1291 1.4428 -0.0434 36 1 1.6418 1.9687 -0.8675 37 1 1.7125 1.9437 0.9108 38 1 2.2918 0.6720 2.8315 39 1 0.7302 1.2042 4.4830 40 1 -0.7718 0.4514 4.4928 41 1 3.5467 -2.5400 0.0940 42 1 6.9880 -2.8247 -0.9945 43 1 5.4356 -3.6875 -0.8769 44 1 4.3153 -1.8372 -2.0893 45 1 5.8677 -0.9744 -2.2069 46 1 4.4796 -0.7754 -5.6119 47 1 4.6204 -4.0522 1.6864 48 1 5.6187 -5.1601 3.6459 49 1 7.7199 -4.3065 4.6050 50 1 8.8269 -2.3502 3.5998 51 1 7.8331 -1.2477 1.6351 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001636541548.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:59 Heat of formation + Delta-G solvation = -86.105470 kcal Electronic energy + Delta-G solvation = -31658.001547 eV Core-core repulsion = 27555.420953 eV Total energy + Delta-G solvation = -4102.580593 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.85483 -40.73886 -39.73375 -37.46148 -36.84643 -35.14890 -34.87330 -33.37611 -33.07152 -31.86089 -31.69635 -28.91505 -28.07972 -27.65013 -25.26051 -23.53407 -22.64558 -22.60725 -22.33230 -21.30840 -20.67624 -19.62318 -18.62004 -18.46872 -17.79885 -17.49843 -17.21206 -16.87256 -16.55647 -16.20200 -16.03076 -15.52299 -15.45242 -15.18161 -14.91412 -14.78041 -14.64436 -14.55242 -14.23858 -14.17288 -13.85252 -13.68736 -13.36844 -13.30673 -12.97785 -12.88137 -12.53188 -12.45770 -12.41595 -12.13901 -12.05525 -11.90449 -11.82458 -11.74327 -11.42050 -11.35932 -11.17283 -10.90968 -10.58165 -10.52933 -10.14195 -10.00628 -9.76638 -9.55980 -8.16581 -6.26572 0.47086 0.55042 1.40566 1.42401 1.47347 1.53975 1.70313 2.16559 2.39418 2.42689 2.93931 3.17330 3.53463 3.68056 3.76730 3.83202 3.91910 3.98359 4.15860 4.17853 4.25364 4.32184 4.36837 4.43959 4.61772 4.66951 4.67678 4.77616 4.78642 4.91941 4.97790 4.99559 5.11049 5.12295 5.18654 5.20763 5.26600 5.37716 5.39344 5.42581 5.54642 5.61437 5.64679 5.70879 5.81827 5.87161 5.88251 6.07788 6.15895 6.27127 6.48267 6.90254 7.04875 7.13716 7.42465 7.67022 8.94302 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007006 B = 0.004097 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3995.721697 B = 6832.549886 C = 9991.997981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.100 4.100 3 C -0.137 4.137 4 C 0.163 3.837 5 H 0.108 0.892 6 N -0.719 5.719 7 C 0.705 3.295 8 N -0.848 5.848 9 O -0.625 6.625 10 C 0.519 3.481 11 O -0.561 6.561 12 N -0.702 5.702 13 C 0.197 3.803 14 H 0.068 0.932 15 C -0.097 4.097 16 C 0.033 3.967 17 C -0.539 4.539 18 H 0.059 0.941 19 C 0.005 3.995 20 N -0.927 5.927 21 Si 0.956 3.044 22 H -0.263 1.263 23 H -0.279 1.279 24 H -0.283 1.283 25 C -0.096 4.096 26 C -0.118 4.118 27 C -0.126 4.126 28 C -0.127 4.127 29 C -0.124 4.124 30 C -0.126 4.126 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.073 0.927 35 H 0.037 0.963 36 H 0.058 0.942 37 H 0.067 0.933 38 H 0.410 0.590 39 H 0.411 0.589 40 H 0.423 0.577 41 H 0.410 0.590 42 H 0.064 0.936 43 H 0.068 0.932 44 H 0.007 0.993 45 H -0.018 1.018 46 H 0.261 0.739 47 H 0.123 0.877 48 H 0.142 0.858 49 H 0.147 0.853 50 H 0.142 0.858 51 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.941 0.449 20.308 20.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.121 4.121 3 C -0.195 4.195 4 C 0.053 3.947 5 H 0.126 0.874 6 N -0.376 5.376 7 C 0.403 3.597 8 N -0.417 5.417 9 O -0.506 6.506 10 C 0.305 3.695 11 O -0.439 6.439 12 N -0.352 5.352 13 C 0.092 3.908 14 H 0.086 0.914 15 C -0.135 4.135 16 C -0.004 4.004 17 C -0.577 4.577 18 H 0.077 0.923 19 C -0.193 4.193 20 N -0.568 5.568 21 Si 0.781 3.219 22 H -0.187 1.187 23 H -0.205 1.205 24 H -0.209 1.209 25 C -0.097 4.097 26 C -0.136 4.136 27 C -0.144 4.144 28 C -0.145 4.145 29 C -0.142 4.142 30 C -0.144 4.144 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.056 0.944 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.247 0.753 39 H 0.242 0.758 40 H 0.256 0.744 41 H 0.246 0.754 42 H 0.083 0.917 43 H 0.087 0.913 44 H 0.025 0.975 45 H 0.001 0.999 46 H 0.070 0.930 47 H 0.141 0.859 48 H 0.160 0.840 49 H 0.164 0.836 50 H 0.159 0.841 51 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -4.040 0.455 20.059 20.467 hybrid contribution 0.230 0.179 -1.037 1.078 sum -3.810 0.634 19.022 19.410 Atomic orbital electron populations 1.21706 0.92860 1.02054 1.01360 1.21442 0.97588 0.97161 0.95868 1.21710 1.00020 0.95429 1.02293 1.20516 0.90068 0.97759 0.86389 0.87385 1.44646 1.16180 1.46631 1.30182 1.15976 0.81679 0.81121 0.80903 1.42761 1.22218 1.46722 1.30002 1.90963 1.52201 1.41582 1.65828 1.20685 0.90431 0.80570 0.77862 1.90639 1.64610 1.42549 1.46150 1.45909 1.07701 1.27394 1.54223 1.19766 0.79574 0.98944 0.92484 0.91367 1.21728 1.01104 0.98618 0.92007 1.18933 0.95503 0.93996 0.91951 1.21687 1.36627 1.06963 0.92452 0.92289 1.25850 0.95075 0.95929 1.02446 1.70090 1.40803 1.21007 1.24866 0.85532 0.77997 0.78990 0.79332 1.18671 1.20510 1.20858 1.20217 0.96054 0.96638 0.96770 1.21077 1.00190 0.95454 0.96927 1.21420 0.96484 1.00381 0.96104 1.21466 0.95732 0.96668 1.00628 1.21379 1.00632 0.96398 0.95752 1.21172 0.95853 1.00258 0.97146 0.92506 0.92731 0.92833 0.90845 0.94386 0.92251 0.91448 0.75257 0.75825 0.74375 0.75397 0.91739 0.91325 0.97463 0.99923 0.92985 0.85908 0.84037 0.83572 0.84057 0.86461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.27 7.81 71.98 0.56 -2.71 16 2 C -0.10 -2.80 2.73 -10.79 -0.03 -2.83 16 3 C -0.14 -3.79 8.79 71.98 0.63 -3.16 16 4 C 0.16 4.31 2.34 44.24 0.10 4.42 16 5 H 0.11 2.87 7.58 -2.39 -0.02 2.85 16 6 N -0.72 -16.16 3.96 -461.43 -1.83 -17.99 16 7 C 0.71 15.79 7.43 179.06 1.33 17.13 16 8 N -0.85 -10.98 8.88 -184.75 -1.64 -12.62 16 9 O -0.62 -18.62 14.32 -3.98 -0.06 -18.67 16 10 C 0.52 15.82 6.18 87.66 0.54 16.36 16 11 O -0.56 -19.49 15.30 -3.02 -0.05 -19.54 16 12 N -0.70 -21.45 3.76 -446.09 -1.68 -23.13 16 13 C 0.20 6.65 2.13 44.24 0.09 6.74 16 14 H 0.07 2.63 7.51 -2.39 -0.02 2.61 16 15 C -0.10 -3.69 4.67 30.59 0.14 -3.55 16 16 C 0.03 1.64 4.86 29.85 0.15 1.79 16 17 C -0.54 -29.39 9.11 25.60 0.23 -29.16 16 18 H 0.06 3.10 7.74 -2.91 -0.02 3.08 16 19 C 0.01 0.29 5.46 84.66 0.46 0.75 16 20 N -0.93 -54.92 13.29 21.45 0.28 -54.64 16 21 Si 0.96 43.46 29.54 68.60 2.03 45.48 16 22 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 23 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 24 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 25 C -0.10 -2.87 4.91 -19.86 -0.10 -2.96 16 26 C -0.12 -3.12 9.33 22.27 0.21 -2.92 16 27 C -0.13 -2.80 10.05 22.27 0.22 -2.57 16 28 C -0.13 -2.63 10.05 22.27 0.22 -2.40 16 29 C -0.12 -2.84 10.05 22.27 0.22 -2.62 16 30 C -0.13 -3.55 9.67 22.27 0.22 -3.34 16 31 H 0.06 1.52 5.63 -2.38 -0.01 1.51 16 32 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.05 1.50 7.88 -2.39 -0.02 1.49 16 34 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 35 H 0.04 1.21 7.18 -2.39 -0.02 1.20 16 36 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.07 1.62 7.38 -2.39 -0.02 1.60 16 38 H 0.41 8.52 7.78 -92.71 -0.72 7.79 16 39 H 0.41 3.09 8.84 -92.71 -0.82 2.27 16 40 H 0.42 4.35 8.93 -92.70 -0.83 3.52 16 41 H 0.41 11.39 8.60 -92.71 -0.80 10.59 16 42 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 43 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 44 H 0.01 0.36 7.75 -2.39 -0.02 0.34 16 45 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 46 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 47 H 0.12 3.00 7.71 -2.91 -0.02 2.98 16 48 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 49 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 50 H 0.14 2.49 8.06 -2.91 -0.02 2.47 16 51 H 0.12 3.27 8.04 -2.91 -0.02 3.25 16 Total: -1.00 -71.61 415.81 0.08 -71.53 By element: Atomic # 1 Polarization: 42.80 SS G_CDS: -2.19 Total: 40.61 kcal Atomic # 6 Polarization: -16.25 SS G_CDS: 5.22 Total: -11.03 kcal Atomic # 7 Polarization: -103.51 SS G_CDS: -4.86 Total: -108.37 kcal Atomic # 8 Polarization: -38.11 SS G_CDS: -0.10 Total: -38.21 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Total: -71.61 0.08 -71.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001636541548.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.578 kcal (2) G-P(sol) polarization free energy of solvation -71.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds