Wall clock time and date at job start Wed Apr 1 2020 04:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47221 * 2 1 4 4 C 1.53002 * 109.47194 * 172.69792 * 3 2 1 5 5 C 1.52995 * 109.47332 * 186.16741 * 4 3 2 6 6 C 1.53001 * 109.47238 * 292.69710 * 3 2 1 7 7 N 1.46504 * 109.46874 * 295.61800 * 6 3 2 8 8 C 1.46501 * 120.00153 * 270.22458 * 7 6 3 9 9 C 1.50698 * 109.46810 * 261.71313 * 8 7 6 10 10 H 1.07998 * 120.00486 * 354.61120 * 9 8 7 11 11 C 1.37876 * 119.99635 * 174.61149 * 9 8 7 12 12 N 1.31513 * 120.00301 * 349.11416 * 11 9 8 13 13 Si 1.86806 * 120.00109 * 169.11658 * 11 9 8 14 14 H 1.48505 * 109.47087 * 59.99518 * 13 11 9 15 15 H 1.48500 * 109.47296 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.46750 * 299.99830 * 13 11 9 17 17 C 1.34778 * 119.99577 * 90.22834 * 7 6 3 18 18 O 1.21506 * 120.00171 * 4.15324 * 17 7 6 19 19 C 1.48231 * 119.99495 * 184.15806 * 17 7 6 20 20 C 1.39630 * 119.64940 * 177.54571 * 19 17 7 21 21 C 1.38549 * 119.24220 * 179.97438 * 20 19 17 22 22 C 1.38586 * 118.55198 * 359.73912 * 21 20 19 23 23 C 1.39583 * 119.24740 * 0.54750 * 22 21 20 24 24 C 1.48225 * 119.65286 * 179.70960 * 23 22 21 25 25 O 1.21511 * 120.00178 * 6.16773 * 24 23 22 26 26 N 1.34779 * 120.00159 * 186.16807 * 24 23 22 27 27 C 1.46496 * 119.99974 * 185.14540 * 26 24 23 28 28 N 1.32340 * 119.65667 * 357.57123 * 19 17 7 29 29 H 1.08996 * 109.47444 * 302.18103 * 1 2 3 30 30 H 1.09004 * 109.46520 * 62.18314 * 1 2 3 31 31 H 1.08999 * 109.47194 * 182.17277 * 1 2 3 32 32 H 1.09004 * 109.47519 * 239.99403 * 2 1 3 33 33 H 1.09002 * 109.46535 * 120.00219 * 2 1 3 34 34 H 1.09001 * 109.47145 * 52.69813 * 3 2 1 35 35 H 1.08999 * 109.46993 * 306.16677 * 4 3 2 36 36 H 1.09004 * 109.46934 * 66.16335 * 4 3 2 37 37 H 1.09002 * 109.47161 * 175.71458 * 5 4 3 38 38 H 1.09004 * 109.46981 * 295.71008 * 5 4 3 39 39 H 1.08998 * 109.47470 * 55.71403 * 5 4 3 40 40 H 1.09000 * 109.47133 * 175.62436 * 6 3 2 41 41 H 1.09001 * 109.47124 * 55.61521 * 6 3 2 42 42 H 1.09003 * 109.46812 * 21.71023 * 8 7 6 43 43 H 1.08999 * 109.47194 * 141.71452 * 8 7 6 44 44 H 0.97003 * 120.00410 * 180.02562 * 12 11 9 45 45 H 1.07995 * 120.38169 * 359.97438 * 20 19 17 46 46 H 1.08001 * 120.72178 * 180.02562 * 21 20 19 47 47 H 1.08006 * 120.37537 * 180.25570 * 22 21 20 48 48 H 0.97003 * 119.99596 * 5.14835 * 26 24 23 49 49 H 1.09000 * 109.46765 * 175.63865 * 27 26 24 50 50 H 1.08996 * 109.47150 * 295.63947 * 27 26 24 51 51 H 1.08998 * 109.47412 * 55.64014 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5590 1.4463 0.1833 5 6 4.0505 2.8870 0.3374 6 6 1.6853 2.1088 -1.3308 7 7 2.3952 1.4332 -2.4197 8 6 3.7277 1.8914 -2.8208 9 6 3.6092 2.7847 -4.0287 10 1 2.6509 2.9211 -4.5076 11 6 4.7243 3.4278 -4.5225 12 7 5.8398 3.4382 -3.8260 13 14 4.6508 4.2844 -6.1810 14 1 3.6116 5.3447 -6.1448 15 1 5.9705 4.8953 -6.4815 16 1 4.3115 3.2945 -7.2347 17 6 1.8225 0.3902 -3.0526 18 8 0.6880 0.0578 -2.7719 19 6 2.5767 -0.3515 -4.0910 20 6 1.9955 -1.4625 -4.7056 21 6 2.7078 -2.1492 -5.6755 22 6 3.9772 -1.7019 -6.0062 23 6 4.5005 -0.5877 -5.3482 24 6 5.8598 -0.1055 -5.6902 25 8 6.4679 -0.6077 -6.6147 26 7 6.4214 0.8898 -4.9758 27 6 7.7156 1.4431 -5.3821 28 7 3.7938 0.0459 -4.4256 29 1 -0.3634 0.5473 0.8697 30 1 -0.3632 0.4796 -0.9090 31 1 -0.3633 -1.0269 0.0390 32 1 1.8934 -0.5139 -0.8899 33 1 1.8932 -0.5139 0.8900 34 1 1.5740 1.9926 0.8175 35 1 3.8187 0.8765 1.0755 36 1 4.0313 0.9924 -0.6880 37 1 5.1208 2.8856 0.5438 38 1 3.8589 3.4367 -0.5841 39 1 3.5220 3.3650 1.1622 40 1 1.9791 3.1580 -1.3014 41 1 0.6106 2.0369 -1.4981 42 1 4.1827 2.4474 -2.0010 43 1 4.3497 1.0303 -3.0653 44 1 6.6243 3.8910 -4.1733 45 1 1.0022 -1.7829 -4.4281 46 1 2.2813 -3.0114 -6.1665 47 1 4.5567 -2.2126 -6.7610 48 1 5.9686 1.2398 -4.1926 49 1 7.9703 2.2834 -4.7363 50 1 8.4827 0.6735 -5.2966 51 1 7.6567 1.7841 -6.4157 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647108058.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:54 Heat of formation + Delta-G solvation = -23.712245 kcal Electronic energy + Delta-G solvation = -33726.821850 eV Core-core repulsion = 29626.946830 eV Total energy + Delta-G solvation = -4099.875020 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.57365 -39.30884 -38.20254 -36.59131 -34.69662 -33.83532 -32.51479 -32.07567 -31.67447 -31.18628 -28.16603 -26.74362 -26.51300 -25.30267 -23.93453 -23.45658 -22.71930 -21.48830 -20.52370 -19.72559 -18.68291 -17.46054 -16.99746 -16.62195 -15.82324 -15.63029 -15.37550 -15.26561 -14.87098 -14.66630 -14.55701 -14.29130 -13.98083 -13.62022 -13.47551 -13.10101 -12.98824 -12.87616 -12.47024 -12.41003 -12.29453 -12.12080 -11.95130 -11.79165 -11.55415 -11.34746 -11.22258 -11.09947 -10.99246 -10.85056 -10.45067 -10.32724 -10.22297 -10.20184 -9.92207 -9.79248 -9.74467 -9.59560 -9.32790 -8.90360 -8.79371 -8.35171 -8.18822 -7.66749 -6.23117 -4.18563 0.87043 1.33867 2.95800 3.21730 3.25977 3.33513 3.61853 3.71955 3.81726 4.31233 4.38024 4.58730 5.02763 5.10402 5.15640 5.18126 5.23887 5.25693 5.28353 5.29886 5.68233 5.74198 5.79306 5.83297 5.89291 5.93599 5.94427 6.01070 6.03395 6.06182 6.20945 6.21880 6.28525 6.32599 6.32743 6.37637 6.43059 6.54216 6.60178 6.66989 6.75353 6.79775 6.84817 6.95106 7.10932 7.44107 7.59383 7.76226 7.97089 8.13327 8.25967 8.40139 8.76840 8.87771 8.93203 9.41255 10.82466 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009694 B = 0.005656 C = 0.004398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2887.582213 B = 4949.334193 C = 6365.308392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.112 4.112 3 C -0.101 4.101 4 C -0.121 4.121 5 C -0.153 4.153 6 C 0.118 3.882 7 N -0.566 5.566 8 C 0.207 3.793 9 C -0.497 4.497 10 H 0.052 0.948 11 C 0.073 3.927 12 N -0.894 5.894 13 Si 0.876 3.124 14 H -0.279 1.279 15 H -0.284 1.284 16 H -0.279 1.279 17 C 0.565 3.435 18 O -0.560 6.560 19 C 0.083 3.917 20 C -0.102 4.102 21 C -0.100 4.100 22 C -0.102 4.102 23 C 0.067 3.933 24 C 0.565 3.435 25 O -0.562 6.562 26 N -0.689 5.689 27 C 0.093 3.907 28 N -0.369 5.369 29 H 0.038 0.962 30 H 0.076 0.924 31 H 0.042 0.958 32 H 0.062 0.938 33 H 0.047 0.953 34 H 0.070 0.930 35 H 0.049 0.951 36 H 0.074 0.926 37 H 0.050 0.950 38 H 0.072 0.928 39 H 0.042 0.958 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.054 0.946 43 H 0.075 0.925 44 H 0.264 0.736 45 H 0.146 0.854 46 H 0.141 0.859 47 H 0.144 0.856 48 H 0.434 0.566 49 H 0.084 0.916 50 H 0.048 0.952 51 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.683 -6.222 4.618 8.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.150 4.150 3 C -0.121 4.121 4 C -0.158 4.158 5 C -0.210 4.210 6 C -0.005 4.005 7 N -0.294 5.294 8 C 0.088 3.912 9 C -0.536 4.536 10 H 0.070 0.930 11 C -0.127 4.127 12 N -0.536 5.536 13 Si 0.704 3.296 14 H -0.205 1.205 15 H -0.210 1.210 16 H -0.204 1.204 17 C 0.352 3.648 18 O -0.440 6.440 19 C -0.057 4.057 20 C -0.123 4.123 21 C -0.126 4.126 22 C -0.123 4.123 23 C -0.073 4.073 24 C 0.349 3.651 25 O -0.442 6.442 26 N -0.344 5.344 27 C -0.052 4.052 28 N -0.083 5.083 29 H 0.058 0.942 30 H 0.095 0.905 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.066 0.934 34 H 0.089 0.911 35 H 0.068 0.932 36 H 0.092 0.908 37 H 0.069 0.931 38 H 0.091 0.909 39 H 0.061 0.939 40 H 0.097 0.903 41 H 0.094 0.906 42 H 0.072 0.928 43 H 0.092 0.908 44 H 0.074 0.926 45 H 0.164 0.836 46 H 0.159 0.841 47 H 0.162 0.838 48 H 0.280 0.720 49 H 0.103 0.897 50 H 0.067 0.933 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.248 -5.827 4.578 7.744 hybrid contribution -0.466 0.176 -1.273 1.367 sum -2.714 -5.651 3.304 7.087 Atomic orbital electron populations 1.21792 0.95840 1.00862 1.01903 1.21487 0.96171 0.96212 1.01092 1.21627 0.96196 0.96613 0.97624 1.21632 0.95066 0.97478 1.01668 1.21873 1.00399 0.96716 1.02055 1.21494 0.97381 0.96309 0.85350 1.48099 1.20403 1.28930 1.31945 1.20501 0.77893 0.96900 0.95920 1.21368 0.94581 1.25842 1.11778 0.93014 1.24645 0.95604 0.95802 0.96659 1.69827 1.02350 1.44703 1.36732 0.86892 0.77375 0.79853 0.85486 1.20487 1.20994 1.20443 1.17762 0.85367 0.80878 0.80789 1.90661 1.17866 1.69058 1.66451 1.21334 0.91723 0.94773 0.97917 1.22246 1.00978 0.94373 0.94671 1.21488 0.94047 1.00013 0.97060 1.22240 0.95742 0.95619 0.98709 1.21430 0.95923 0.94303 0.95677 1.17923 0.84345 0.80441 0.82388 1.90694 1.63250 1.59053 1.31166 1.46140 1.21673 1.34846 1.31785 1.21458 0.84643 0.98559 1.00492 1.68604 1.05463 1.24341 1.09871 0.94246 0.90539 0.93904 0.91893 0.93435 0.91120 0.93215 0.90783 0.93105 0.90872 0.93851 0.90271 0.90615 0.92818 0.90818 0.92581 0.83623 0.84090 0.83780 0.72042 0.89703 0.93325 0.93275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.09 37.16 0.34 -1.74 16 2 C -0.11 -1.65 4.88 -26.73 -0.13 -1.78 16 3 C -0.10 -1.47 2.18 -90.62 -0.20 -1.67 16 4 C -0.12 -1.80 4.86 -26.73 -0.13 -1.93 16 5 C -0.15 -2.26 8.93 37.16 0.33 -1.93 16 6 C 0.12 1.98 4.88 -4.04 -0.02 1.96 16 7 N -0.57 -10.77 1.98 -176.02 -0.35 -11.12 16 8 C 0.21 4.34 3.03 -5.19 -0.02 4.32 16 9 C -0.50 -11.77 8.01 -34.44 -0.28 -12.05 16 10 H 0.05 1.33 7.84 -52.49 -0.41 0.92 16 11 C 0.07 1.73 4.39 -17.82 -0.08 1.66 16 12 N -0.89 -20.67 10.70 55.43 0.59 -20.08 16 13 Si 0.88 20.18 29.55 -169.99 -5.02 15.16 16 14 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 15 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 17 C 0.57 10.96 5.95 -12.15 -0.07 10.89 16 18 O -0.56 -10.94 12.34 5.36 0.07 -10.87 16 19 C 0.08 1.56 6.64 -83.02 -0.55 1.01 16 20 C -0.10 -1.57 9.63 -38.95 -0.38 -1.95 16 21 C -0.10 -1.35 10.16 -39.34 -0.40 -1.75 16 22 C -0.10 -1.61 9.63 -38.95 -0.38 -1.99 16 23 C 0.07 1.28 6.75 -83.03 -0.56 0.72 16 24 C 0.56 11.67 7.80 -12.15 -0.09 11.58 16 25 O -0.56 -12.25 16.35 5.36 0.09 -12.17 16 26 N -0.69 -13.94 5.09 -67.93 -0.35 -14.28 16 27 C 0.09 1.66 10.41 59.84 0.62 2.28 16 28 N -0.37 -7.33 4.46 -6.38 -0.03 -7.36 16 29 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 1.22 4.89 -51.93 -0.25 0.97 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 1.07 5.55 -51.93 -0.29 0.78 16 33 H 0.05 0.64 8.12 -51.93 -0.42 0.22 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.05 0.68 8.13 -51.93 -0.42 0.25 16 36 H 0.07 1.26 5.65 -51.93 -0.29 0.97 16 37 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.07 1.24 5.20 -51.93 -0.27 0.97 16 39 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.08 1.34 6.85 -51.93 -0.36 0.98 16 41 H 0.08 1.29 5.84 -51.93 -0.30 0.98 16 42 H 0.05 1.15 4.18 -51.93 -0.22 0.94 16 43 H 0.08 1.62 3.81 -55.34 -0.21 1.41 16 44 H 0.26 5.96 7.60 -40.82 -0.31 5.65 16 45 H 0.15 2.03 7.64 -52.49 -0.40 1.63 16 46 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 47 H 0.14 2.07 7.65 -52.48 -0.40 1.67 16 48 H 0.43 9.22 4.05 -40.82 -0.17 9.06 16 49 H 0.08 1.44 7.02 -51.93 -0.36 1.07 16 50 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 51 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 384.06 15.07 5.79 5.79 Total: -1.00 -26.00 384.06 -8.46 -34.46 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: -7.27 Total: 12.85 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: -1.98 Total: 7.63 kcal Atomic # 7 Polarization: -52.72 SS G_CDS: -0.13 Total: -52.85 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: 0.15 Total: -23.04 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -26.00 -8.46 -34.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647108058.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.751 kcal (2) G-P(sol) polarization free energy of solvation -26.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds