Wall clock time and date at job start Wed Apr 1 2020 04:25:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.52992 * 109.47221 * 2 1
4 4 C 1.53002 * 109.47194 * 172.69792 * 3 2 1
5 5 C 1.52995 * 109.47332 * 186.16741 * 4 3 2
6 6 C 1.53001 * 109.47238 * 292.69710 * 3 2 1
7 7 N 1.46504 * 109.46874 * 295.61800 * 6 3 2
8 8 C 1.46501 * 120.00153 * 270.22458 * 7 6 3
9 9 C 1.50698 * 109.46810 * 261.71313 * 8 7 6
10 10 H 1.07998 * 120.00486 * 354.61120 * 9 8 7
11 11 C 1.37876 * 119.99635 * 174.61149 * 9 8 7
12 12 N 1.31513 * 120.00301 * 349.11416 * 11 9 8
13 13 Si 1.86806 * 120.00109 * 169.11658 * 11 9 8
14 14 H 1.48505 * 109.47087 * 59.99518 * 13 11 9
15 15 H 1.48500 * 109.47296 * 179.97438 * 13 11 9
16 16 H 1.48504 * 109.46750 * 299.99830 * 13 11 9
17 17 C 1.34778 * 119.99577 * 90.22834 * 7 6 3
18 18 O 1.21506 * 120.00171 * 4.15324 * 17 7 6
19 19 C 1.48231 * 119.99495 * 184.15806 * 17 7 6
20 20 C 1.39630 * 119.64940 * 177.54571 * 19 17 7
21 21 C 1.38549 * 119.24220 * 179.97438 * 20 19 17
22 22 C 1.38586 * 118.55198 * 359.73912 * 21 20 19
23 23 C 1.39583 * 119.24740 * 0.54750 * 22 21 20
24 24 C 1.48225 * 119.65286 * 179.70960 * 23 22 21
25 25 O 1.21511 * 120.00178 * 6.16773 * 24 23 22
26 26 N 1.34779 * 120.00159 * 186.16807 * 24 23 22
27 27 C 1.46496 * 119.99974 * 185.14540 * 26 24 23
28 28 N 1.32340 * 119.65667 * 357.57123 * 19 17 7
29 29 H 1.08996 * 109.47444 * 302.18103 * 1 2 3
30 30 H 1.09004 * 109.46520 * 62.18314 * 1 2 3
31 31 H 1.08999 * 109.47194 * 182.17277 * 1 2 3
32 32 H 1.09004 * 109.47519 * 239.99403 * 2 1 3
33 33 H 1.09002 * 109.46535 * 120.00219 * 2 1 3
34 34 H 1.09001 * 109.47145 * 52.69813 * 3 2 1
35 35 H 1.08999 * 109.46993 * 306.16677 * 4 3 2
36 36 H 1.09004 * 109.46934 * 66.16335 * 4 3 2
37 37 H 1.09002 * 109.47161 * 175.71458 * 5 4 3
38 38 H 1.09004 * 109.46981 * 295.71008 * 5 4 3
39 39 H 1.08998 * 109.47470 * 55.71403 * 5 4 3
40 40 H 1.09000 * 109.47133 * 175.62436 * 6 3 2
41 41 H 1.09001 * 109.47124 * 55.61521 * 6 3 2
42 42 H 1.09003 * 109.46812 * 21.71023 * 8 7 6
43 43 H 1.08999 * 109.47194 * 141.71452 * 8 7 6
44 44 H 0.97003 * 120.00410 * 180.02562 * 12 11 9
45 45 H 1.07995 * 120.38169 * 359.97438 * 20 19 17
46 46 H 1.08001 * 120.72178 * 180.02562 * 21 20 19
47 47 H 1.08006 * 120.37537 * 180.25570 * 22 21 20
48 48 H 0.97003 * 119.99596 * 5.14835 * 26 24 23
49 49 H 1.09000 * 109.46765 * 175.63865 * 27 26 24
50 50 H 1.08996 * 109.47150 * 295.63947 * 27 26 24
51 51 H 1.08998 * 109.47412 * 55.64014 * 27 26 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 6 3.5590 1.4463 0.1833
5 6 4.0505 2.8870 0.3374
6 6 1.6853 2.1088 -1.3308
7 7 2.3952 1.4332 -2.4197
8 6 3.7277 1.8914 -2.8208
9 6 3.6092 2.7847 -4.0287
10 1 2.6509 2.9211 -4.5076
11 6 4.7243 3.4278 -4.5225
12 7 5.8398 3.4382 -3.8260
13 14 4.6508 4.2844 -6.1810
14 1 3.6116 5.3447 -6.1448
15 1 5.9705 4.8953 -6.4815
16 1 4.3115 3.2945 -7.2347
17 6 1.8225 0.3902 -3.0526
18 8 0.6880 0.0578 -2.7719
19 6 2.5767 -0.3515 -4.0910
20 6 1.9955 -1.4625 -4.7056
21 6 2.7078 -2.1492 -5.6755
22 6 3.9772 -1.7019 -6.0062
23 6 4.5005 -0.5877 -5.3482
24 6 5.8598 -0.1055 -5.6902
25 8 6.4679 -0.6077 -6.6147
26 7 6.4214 0.8898 -4.9758
27 6 7.7156 1.4431 -5.3821
28 7 3.7938 0.0459 -4.4256
29 1 -0.3634 0.5473 0.8697
30 1 -0.3632 0.4796 -0.9090
31 1 -0.3633 -1.0269 0.0390
32 1 1.8934 -0.5139 -0.8899
33 1 1.8932 -0.5139 0.8900
34 1 1.5740 1.9926 0.8175
35 1 3.8187 0.8765 1.0755
36 1 4.0313 0.9924 -0.6880
37 1 5.1208 2.8856 0.5438
38 1 3.8589 3.4367 -0.5841
39 1 3.5220 3.3650 1.1622
40 1 1.9791 3.1580 -1.3014
41 1 0.6106 2.0369 -1.4981
42 1 4.1827 2.4474 -2.0010
43 1 4.3497 1.0303 -3.0653
44 1 6.6243 3.8910 -4.1733
45 1 1.0022 -1.7829 -4.4281
46 1 2.2813 -3.0114 -6.1665
47 1 4.5567 -2.2126 -6.7610
48 1 5.9686 1.2398 -4.1926
49 1 7.9703 2.2834 -4.7363
50 1 8.4827 0.6735 -5.2966
51 1 7.6567 1.7841 -6.4157
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001647108058.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:25:54
Heat of formation + Delta-G solvation = -23.712245 kcal
Electronic energy + Delta-G solvation = -33726.821850 eV
Core-core repulsion = 29626.946830 eV
Total energy + Delta-G solvation = -4099.875020 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.96 seconds
Orbital eigenvalues (eV)
-40.57365 -39.30884 -38.20254 -36.59131 -34.69662 -33.83532 -32.51479 -32.07567
-31.67447 -31.18628 -28.16603 -26.74362 -26.51300 -25.30267 -23.93453 -23.45658
-22.71930 -21.48830 -20.52370 -19.72559 -18.68291 -17.46054 -16.99746 -16.62195
-15.82324 -15.63029 -15.37550 -15.26561 -14.87098 -14.66630 -14.55701 -14.29130
-13.98083 -13.62022 -13.47551 -13.10101 -12.98824 -12.87616 -12.47024 -12.41003
-12.29453 -12.12080 -11.95130 -11.79165 -11.55415 -11.34746 -11.22258 -11.09947
-10.99246 -10.85056 -10.45067 -10.32724 -10.22297 -10.20184 -9.92207 -9.79248
-9.74467 -9.59560 -9.32790 -8.90360 -8.79371 -8.35171 -8.18822 -7.66749
-6.23117 -4.18563 0.87043 1.33867 2.95800 3.21730 3.25977 3.33513
3.61853 3.71955 3.81726 4.31233 4.38024 4.58730 5.02763 5.10402
5.15640 5.18126 5.23887 5.25693 5.28353 5.29886 5.68233 5.74198
5.79306 5.83297 5.89291 5.93599 5.94427 6.01070 6.03395 6.06182
6.20945 6.21880 6.28525 6.32599 6.32743 6.37637 6.43059 6.54216
6.60178 6.66989 6.75353 6.79775 6.84817 6.95106 7.10932 7.44107
7.59383 7.76226 7.97089 8.13327 8.25967 8.40139 8.76840 8.87771
8.93203 9.41255 10.82466
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.009694 B = 0.005656 C = 0.004398
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2887.582213 B = 4949.334193 C = 6365.308392
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.112 4.112
3 C -0.101 4.101
4 C -0.121 4.121
5 C -0.153 4.153
6 C 0.118 3.882
7 N -0.566 5.566
8 C 0.207 3.793
9 C -0.497 4.497
10 H 0.052 0.948
11 C 0.073 3.927
12 N -0.894 5.894
13 Si 0.876 3.124
14 H -0.279 1.279
15 H -0.284 1.284
16 H -0.279 1.279
17 C 0.565 3.435
18 O -0.560 6.560
19 C 0.083 3.917
20 C -0.102 4.102
21 C -0.100 4.100
22 C -0.102 4.102
23 C 0.067 3.933
24 C 0.565 3.435
25 O -0.562 6.562
26 N -0.689 5.689
27 C 0.093 3.907
28 N -0.369 5.369
29 H 0.038 0.962
30 H 0.076 0.924
31 H 0.042 0.958
32 H 0.062 0.938
33 H 0.047 0.953
34 H 0.070 0.930
35 H 0.049 0.951
36 H 0.074 0.926
37 H 0.050 0.950
38 H 0.072 0.928
39 H 0.042 0.958
40 H 0.079 0.921
41 H 0.076 0.924
42 H 0.054 0.946
43 H 0.075 0.925
44 H 0.264 0.736
45 H 0.146 0.854
46 H 0.141 0.859
47 H 0.144 0.856
48 H 0.434 0.566
49 H 0.084 0.916
50 H 0.048 0.952
51 H 0.049 0.951
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.683 -6.222 4.618 8.199
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.150 4.150
3 C -0.121 4.121
4 C -0.158 4.158
5 C -0.210 4.210
6 C -0.005 4.005
7 N -0.294 5.294
8 C 0.088 3.912
9 C -0.536 4.536
10 H 0.070 0.930
11 C -0.127 4.127
12 N -0.536 5.536
13 Si 0.704 3.296
14 H -0.205 1.205
15 H -0.210 1.210
16 H -0.204 1.204
17 C 0.352 3.648
18 O -0.440 6.440
19 C -0.057 4.057
20 C -0.123 4.123
21 C -0.126 4.126
22 C -0.123 4.123
23 C -0.073 4.073
24 C 0.349 3.651
25 O -0.442 6.442
26 N -0.344 5.344
27 C -0.052 4.052
28 N -0.083 5.083
29 H 0.058 0.942
30 H 0.095 0.905
31 H 0.061 0.939
32 H 0.081 0.919
33 H 0.066 0.934
34 H 0.089 0.911
35 H 0.068 0.932
36 H 0.092 0.908
37 H 0.069 0.931
38 H 0.091 0.909
39 H 0.061 0.939
40 H 0.097 0.903
41 H 0.094 0.906
42 H 0.072 0.928
43 H 0.092 0.908
44 H 0.074 0.926
45 H 0.164 0.836
46 H 0.159 0.841
47 H 0.162 0.838
48 H 0.280 0.720
49 H 0.103 0.897
50 H 0.067 0.933
51 H 0.067 0.933
Dipole moment (debyes) X Y Z Total
from point charges -2.248 -5.827 4.578 7.744
hybrid contribution -0.466 0.176 -1.273 1.367
sum -2.714 -5.651 3.304 7.087
Atomic orbital electron populations
1.21792 0.95840 1.00862 1.01903 1.21487 0.96171 0.96212 1.01092
1.21627 0.96196 0.96613 0.97624 1.21632 0.95066 0.97478 1.01668
1.21873 1.00399 0.96716 1.02055 1.21494 0.97381 0.96309 0.85350
1.48099 1.20403 1.28930 1.31945 1.20501 0.77893 0.96900 0.95920
1.21368 0.94581 1.25842 1.11778 0.93014 1.24645 0.95604 0.95802
0.96659 1.69827 1.02350 1.44703 1.36732 0.86892 0.77375 0.79853
0.85486 1.20487 1.20994 1.20443 1.17762 0.85367 0.80878 0.80789
1.90661 1.17866 1.69058 1.66451 1.21334 0.91723 0.94773 0.97917
1.22246 1.00978 0.94373 0.94671 1.21488 0.94047 1.00013 0.97060
1.22240 0.95742 0.95619 0.98709 1.21430 0.95923 0.94303 0.95677
1.17923 0.84345 0.80441 0.82388 1.90694 1.63250 1.59053 1.31166
1.46140 1.21673 1.34846 1.31785 1.21458 0.84643 0.98559 1.00492
1.68604 1.05463 1.24341 1.09871 0.94246 0.90539 0.93904 0.91893
0.93435 0.91120 0.93215 0.90783 0.93105 0.90872 0.93851 0.90271
0.90615 0.92818 0.90818 0.92581 0.83623 0.84090 0.83780 0.72042
0.89703 0.93325 0.93275
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.07 9.09 37.16 0.34 -1.74 16
2 C -0.11 -1.65 4.88 -26.73 -0.13 -1.78 16
3 C -0.10 -1.47 2.18 -90.62 -0.20 -1.67 16
4 C -0.12 -1.80 4.86 -26.73 -0.13 -1.93 16
5 C -0.15 -2.26 8.93 37.16 0.33 -1.93 16
6 C 0.12 1.98 4.88 -4.04 -0.02 1.96 16
7 N -0.57 -10.77 1.98 -176.02 -0.35 -11.12 16
8 C 0.21 4.34 3.03 -5.19 -0.02 4.32 16
9 C -0.50 -11.77 8.01 -34.44 -0.28 -12.05 16
10 H 0.05 1.33 7.84 -52.49 -0.41 0.92 16
11 C 0.07 1.73 4.39 -17.82 -0.08 1.66 16
12 N -0.89 -20.67 10.70 55.43 0.59 -20.08 16
13 Si 0.88 20.18 29.55 -169.99 -5.02 15.16 16
14 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16
15 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16
16 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16
17 C 0.57 10.96 5.95 -12.15 -0.07 10.89 16
18 O -0.56 -10.94 12.34 5.36 0.07 -10.87 16
19 C 0.08 1.56 6.64 -83.02 -0.55 1.01 16
20 C -0.10 -1.57 9.63 -38.95 -0.38 -1.95 16
21 C -0.10 -1.35 10.16 -39.34 -0.40 -1.75 16
22 C -0.10 -1.61 9.63 -38.95 -0.38 -1.99 16
23 C 0.07 1.28 6.75 -83.03 -0.56 0.72 16
24 C 0.56 11.67 7.80 -12.15 -0.09 11.58 16
25 O -0.56 -12.25 16.35 5.36 0.09 -12.17 16
26 N -0.69 -13.94 5.09 -67.93 -0.35 -14.28 16
27 C 0.09 1.66 10.41 59.84 0.62 2.28 16
28 N -0.37 -7.33 4.46 -6.38 -0.03 -7.36 16
29 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16
30 H 0.08 1.22 4.89 -51.93 -0.25 0.97 16
31 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16
32 H 0.06 1.07 5.55 -51.93 -0.29 0.78 16
33 H 0.05 0.64 8.12 -51.93 -0.42 0.22 16
34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16
35 H 0.05 0.68 8.13 -51.93 -0.42 0.25 16
36 H 0.07 1.26 5.65 -51.93 -0.29 0.97 16
37 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16
38 H 0.07 1.24 5.20 -51.93 -0.27 0.97 16
39 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16
40 H 0.08 1.34 6.85 -51.93 -0.36 0.98 16
41 H 0.08 1.29 5.84 -51.93 -0.30 0.98 16
42 H 0.05 1.15 4.18 -51.93 -0.22 0.94 16
43 H 0.08 1.62 3.81 -55.34 -0.21 1.41 16
44 H 0.26 5.96 7.60 -40.82 -0.31 5.65 16
45 H 0.15 2.03 7.64 -52.49 -0.40 1.63 16
46 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16
47 H 0.14 2.07 7.65 -52.48 -0.40 1.67 16
48 H 0.43 9.22 4.05 -40.82 -0.17 9.06 16
49 H 0.08 1.44 7.02 -51.93 -0.36 1.07 16
50 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16
51 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16
LS Contribution 384.06 15.07 5.79 5.79
Total: -1.00 -26.00 384.06 -8.46 -34.46
By element:
Atomic # 1 Polarization: 20.12 SS G_CDS: -7.27 Total: 12.85 kcal
Atomic # 6 Polarization: 9.61 SS G_CDS: -1.98 Total: 7.63 kcal
Atomic # 7 Polarization: -52.72 SS G_CDS: -0.13 Total: -52.85 kcal
Atomic # 8 Polarization: -23.19 SS G_CDS: 0.15 Total: -23.04 kcal
Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal
Total LS contribution 5.79 Total: 5.79 kcal
Total: -26.00 -8.46 -34.46 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001647108058.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 10.751 kcal
(2) G-P(sol) polarization free energy of solvation -26.001 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.251 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.462 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.463 kcal
(6) G-S(sol) free energy of system = (1) + (5) -23.712 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.96 seconds