Wall clock time and date at job start Wed Apr 1 2020 04:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47221 * 2 1 4 4 C 1.53002 * 109.47194 * 172.69792 * 3 2 1 5 5 C 1.52995 * 109.47332 * 186.16741 * 4 3 2 6 6 C 1.53001 * 109.47238 * 292.69710 * 3 2 1 7 7 N 1.46504 * 109.46874 * 295.61800 * 6 3 2 8 8 C 1.46501 * 120.00153 * 270.22458 * 7 6 3 9 9 C 1.50698 * 109.46810 * 261.71313 * 8 7 6 10 10 H 1.07998 * 120.00486 * 354.61120 * 9 8 7 11 11 C 1.37876 * 119.99635 * 174.61149 * 9 8 7 12 12 N 1.31513 * 120.00301 * 349.11416 * 11 9 8 13 13 Si 1.86806 * 120.00109 * 169.11658 * 11 9 8 14 14 H 1.48505 * 109.47087 * 59.99518 * 13 11 9 15 15 H 1.48500 * 109.47296 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.46750 * 299.99830 * 13 11 9 17 17 C 1.34778 * 119.99577 * 90.22834 * 7 6 3 18 18 O 1.21506 * 120.00171 * 4.15324 * 17 7 6 19 19 C 1.48231 * 119.99495 * 184.15806 * 17 7 6 20 20 C 1.39630 * 119.64940 * 177.54571 * 19 17 7 21 21 C 1.38549 * 119.24220 * 179.97438 * 20 19 17 22 22 C 1.38586 * 118.55198 * 359.73912 * 21 20 19 23 23 C 1.39583 * 119.24740 * 0.54750 * 22 21 20 24 24 C 1.48225 * 119.65286 * 179.70960 * 23 22 21 25 25 O 1.21511 * 120.00178 * 6.16773 * 24 23 22 26 26 N 1.34779 * 120.00159 * 186.16807 * 24 23 22 27 27 C 1.46496 * 119.99974 * 185.14540 * 26 24 23 28 28 N 1.32340 * 119.65667 * 357.57123 * 19 17 7 29 29 H 1.08996 * 109.47444 * 302.18103 * 1 2 3 30 30 H 1.09004 * 109.46520 * 62.18314 * 1 2 3 31 31 H 1.08999 * 109.47194 * 182.17277 * 1 2 3 32 32 H 1.09004 * 109.47519 * 239.99403 * 2 1 3 33 33 H 1.09002 * 109.46535 * 120.00219 * 2 1 3 34 34 H 1.09001 * 109.47145 * 52.69813 * 3 2 1 35 35 H 1.08999 * 109.46993 * 306.16677 * 4 3 2 36 36 H 1.09004 * 109.46934 * 66.16335 * 4 3 2 37 37 H 1.09002 * 109.47161 * 175.71458 * 5 4 3 38 38 H 1.09004 * 109.46981 * 295.71008 * 5 4 3 39 39 H 1.08998 * 109.47470 * 55.71403 * 5 4 3 40 40 H 1.09000 * 109.47133 * 175.62436 * 6 3 2 41 41 H 1.09001 * 109.47124 * 55.61521 * 6 3 2 42 42 H 1.09003 * 109.46812 * 21.71023 * 8 7 6 43 43 H 1.08999 * 109.47194 * 141.71452 * 8 7 6 44 44 H 0.97003 * 120.00410 * 180.02562 * 12 11 9 45 45 H 1.07995 * 120.38169 * 359.97438 * 20 19 17 46 46 H 1.08001 * 120.72178 * 180.02562 * 21 20 19 47 47 H 1.08006 * 120.37537 * 180.25570 * 22 21 20 48 48 H 0.97003 * 119.99596 * 5.14835 * 26 24 23 49 49 H 1.09000 * 109.46765 * 175.63865 * 27 26 24 50 50 H 1.08996 * 109.47150 * 295.63947 * 27 26 24 51 51 H 1.08998 * 109.47412 * 55.64014 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5590 1.4463 0.1833 5 6 4.0505 2.8870 0.3374 6 6 1.6853 2.1088 -1.3308 7 7 2.3952 1.4332 -2.4197 8 6 3.7277 1.8914 -2.8208 9 6 3.6092 2.7847 -4.0287 10 1 2.6509 2.9211 -4.5076 11 6 4.7243 3.4278 -4.5225 12 7 5.8398 3.4382 -3.8260 13 14 4.6508 4.2844 -6.1810 14 1 3.6116 5.3447 -6.1448 15 1 5.9705 4.8953 -6.4815 16 1 4.3115 3.2945 -7.2347 17 6 1.8225 0.3902 -3.0526 18 8 0.6880 0.0578 -2.7719 19 6 2.5767 -0.3515 -4.0910 20 6 1.9955 -1.4625 -4.7056 21 6 2.7078 -2.1492 -5.6755 22 6 3.9772 -1.7019 -6.0062 23 6 4.5005 -0.5877 -5.3482 24 6 5.8598 -0.1055 -5.6902 25 8 6.4679 -0.6077 -6.6147 26 7 6.4214 0.8898 -4.9758 27 6 7.7156 1.4431 -5.3821 28 7 3.7938 0.0459 -4.4256 29 1 -0.3634 0.5473 0.8697 30 1 -0.3632 0.4796 -0.9090 31 1 -0.3633 -1.0269 0.0390 32 1 1.8934 -0.5139 -0.8899 33 1 1.8932 -0.5139 0.8900 34 1 1.5740 1.9926 0.8175 35 1 3.8187 0.8765 1.0755 36 1 4.0313 0.9924 -0.6880 37 1 5.1208 2.8856 0.5438 38 1 3.8589 3.4367 -0.5841 39 1 3.5220 3.3650 1.1622 40 1 1.9791 3.1580 -1.3014 41 1 0.6106 2.0369 -1.4981 42 1 4.1827 2.4474 -2.0010 43 1 4.3497 1.0303 -3.0653 44 1 6.6243 3.8910 -4.1733 45 1 1.0022 -1.7829 -4.4281 46 1 2.2813 -3.0114 -6.1665 47 1 4.5567 -2.2126 -6.7610 48 1 5.9686 1.2398 -4.1926 49 1 7.9703 2.2834 -4.7363 50 1 8.4827 0.6735 -5.2966 51 1 7.6567 1.7841 -6.4157 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647108058.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:53 Heat of formation + Delta-G solvation = -36.249544 kcal Electronic energy + Delta-G solvation = -33727.365508 eV Core-core repulsion = 29626.946830 eV Total energy + Delta-G solvation = -4100.418678 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.96950 -40.76911 -39.65559 -37.96220 -36.22965 -35.36111 -34.19076 -33.43620 -32.86807 -32.53764 -29.67173 -28.20604 -28.01603 -26.55908 -25.37495 -24.87477 -24.26595 -22.67214 -21.88146 -21.18808 -20.01237 -18.96021 -18.68955 -18.13061 -17.08523 -17.06183 -16.83882 -16.77762 -16.39229 -16.30266 -16.10507 -15.55857 -15.35405 -15.03411 -14.77854 -14.57533 -14.33443 -14.26298 -14.00488 -13.77942 -13.59820 -13.55078 -13.23571 -13.08452 -12.99026 -12.95706 -12.88407 -12.53468 -12.46367 -12.31084 -12.05758 -11.81565 -11.58447 -11.42670 -11.35545 -11.28387 -11.08476 -10.93356 -10.83814 -10.52602 -10.28493 -9.88154 -9.75176 -9.19988 -8.08196 -6.05583 -0.46452 0.05747 1.31458 1.36490 1.42345 1.54353 2.10193 2.29679 2.36365 2.46326 2.97411 3.17392 3.24787 3.67414 3.93138 3.98156 3.99390 4.03839 4.05114 4.06576 4.42811 4.47960 4.52501 4.57168 4.62894 4.64400 4.71141 4.75227 4.75795 4.87620 4.88902 4.93848 5.02439 5.05277 5.15185 5.17751 5.22848 5.25325 5.35314 5.41445 5.47562 5.55995 5.57668 5.64358 5.65087 5.71245 5.97840 6.03757 6.33994 6.53715 6.67107 6.85160 6.99659 7.28956 7.39606 7.55661 8.96062 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009694 B = 0.005656 C = 0.004398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2887.582213 B = 4949.334193 C = 6365.308392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.108 4.108 3 C -0.093 4.093 4 C -0.116 4.116 5 C -0.146 4.146 6 C 0.116 3.884 7 N -0.569 5.569 8 C 0.226 3.774 9 C -0.501 4.501 10 H 0.025 0.975 11 C 0.060 3.940 12 N -0.893 5.893 13 Si 0.899 3.101 14 H -0.285 1.285 15 H -0.276 1.276 16 H -0.299 1.299 17 C 0.560 3.440 18 O -0.566 6.566 19 C 0.054 3.946 20 C -0.093 4.093 21 C -0.076 4.076 22 C -0.096 4.096 23 C 0.037 3.963 24 C 0.558 3.442 25 O -0.581 6.581 26 N -0.696 5.696 27 C 0.092 3.908 28 N -0.392 5.392 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.045 0.955 32 H 0.037 0.963 33 H 0.063 0.937 34 H 0.094 0.906 35 H 0.067 0.933 36 H 0.047 0.953 37 H 0.049 0.951 38 H 0.046 0.954 39 H 0.064 0.936 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.049 0.951 43 H 0.070 0.930 44 H 0.267 0.733 45 H 0.164 0.836 46 H 0.193 0.807 47 H 0.160 0.840 48 H 0.429 0.571 49 H 0.090 0.910 50 H 0.065 0.935 51 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.401 -7.664 5.429 9.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.146 4.146 3 C -0.112 4.112 4 C -0.154 4.154 5 C -0.204 4.204 6 C -0.007 4.007 7 N -0.297 5.297 8 C 0.106 3.894 9 C -0.540 4.540 10 H 0.043 0.957 11 C -0.140 4.140 12 N -0.535 5.535 13 Si 0.728 3.272 14 H -0.211 1.211 15 H -0.200 1.200 16 H -0.226 1.226 17 C 0.347 3.653 18 O -0.447 6.447 19 C -0.087 4.087 20 C -0.114 4.114 21 C -0.101 4.101 22 C -0.117 4.117 23 C -0.103 4.103 24 C 0.343 3.657 25 O -0.463 6.463 26 N -0.350 5.350 27 C -0.053 4.053 28 N -0.106 5.106 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.082 0.918 34 H 0.112 0.888 35 H 0.086 0.914 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.083 0.917 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.066 0.934 43 H 0.087 0.913 44 H 0.077 0.923 45 H 0.182 0.818 46 H 0.210 0.790 47 H 0.178 0.822 48 H 0.273 0.727 49 H 0.109 0.891 50 H 0.084 0.916 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -2.954 -7.250 5.402 9.511 hybrid contribution -0.290 0.580 -1.558 1.687 sum -3.244 -6.670 3.845 8.354 Atomic orbital electron populations 1.21712 0.95251 1.01133 1.01661 1.21444 0.96606 0.95966 1.00583 1.21578 0.96115 0.96694 0.96786 1.21570 0.95022 0.97522 1.01261 1.21787 1.00661 0.96447 1.01458 1.21598 0.96883 0.96142 0.86063 1.48066 1.19904 1.29153 1.32564 1.20158 0.78837 0.96005 0.94432 1.21353 0.93377 1.26601 1.12694 0.95676 1.24797 0.95845 0.96205 0.97184 1.69820 1.02247 1.44706 1.36681 0.86572 0.77422 0.78852 0.84324 1.21064 1.20045 1.22583 1.17985 0.85453 0.80913 0.80933 1.90643 1.17974 1.69309 1.66806 1.21470 0.91914 0.96377 0.98902 1.22526 1.01640 0.93038 0.94204 1.21990 0.92427 1.00313 0.95386 1.22507 0.96711 0.94289 0.98153 1.21430 0.95579 0.96099 0.97151 1.18258 0.85036 0.80275 0.82095 1.90660 1.63981 1.59730 1.31883 1.46265 1.22341 1.34828 1.31584 1.21559 0.84297 0.99298 1.00114 1.68380 1.06213 1.25306 1.10671 0.92277 0.92698 0.93574 0.94423 0.91830 0.88835 0.91412 0.93418 0.93212 0.93530 0.91667 0.90910 0.90980 0.93355 0.91299 0.92280 0.81815 0.78961 0.82190 0.72655 0.89118 0.91617 0.93940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.72 9.09 71.98 0.65 -3.07 16 2 C -0.11 -3.04 4.88 30.59 0.15 -2.89 16 3 C -0.09 -2.57 2.18 -10.80 -0.02 -2.60 16 4 C -0.12 -3.34 4.86 30.59 0.15 -3.19 16 5 C -0.15 -4.18 8.93 71.98 0.64 -3.54 16 6 C 0.12 3.89 4.88 86.38 0.42 4.32 16 7 N -0.57 -22.11 1.98 -829.11 -1.64 -23.76 16 8 C 0.23 9.73 3.03 85.63 0.26 9.99 16 9 C -0.50 -24.44 8.01 25.60 0.21 -24.23 16 10 H 0.02 1.33 7.84 -2.91 -0.02 1.31 16 11 C 0.06 2.88 4.39 84.65 0.37 3.25 16 12 N -0.89 -41.63 10.70 21.45 0.23 -41.40 16 13 Si 0.90 41.75 29.55 68.60 2.03 43.77 16 14 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 15 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 16 H -0.30 -14.81 7.11 99.48 0.71 -14.10 16 17 C 0.56 21.89 5.95 86.90 0.52 22.41 16 18 O -0.57 -22.04 12.34 -3.73 -0.05 -22.09 16 19 C 0.05 2.02 6.64 42.06 0.28 2.30 16 20 C -0.09 -2.69 9.63 22.68 0.22 -2.47 16 21 C -0.08 -1.79 10.16 22.43 0.23 -1.56 16 22 C -0.10 -2.84 9.63 22.68 0.22 -2.62 16 23 C 0.04 1.42 6.75 42.04 0.28 1.71 16 24 C 0.56 23.26 7.80 86.90 0.68 23.93 16 25 O -0.58 -25.34 16.35 -3.75 -0.06 -25.40 16 26 N -0.70 -28.56 5.09 -487.11 -2.48 -31.04 16 27 C 0.09 3.26 10.41 127.77 1.33 4.59 16 28 N -0.39 -15.75 4.46 -174.09 -0.78 -16.53 16 29 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.05 1.70 4.89 -2.39 -0.01 1.69 16 31 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.04 1.25 5.55 -2.39 -0.01 1.24 16 33 H 0.06 1.57 8.12 -2.39 -0.02 1.55 16 34 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.07 1.70 8.13 -2.39 -0.02 1.68 16 36 H 0.05 1.63 5.65 -2.38 -0.01 1.62 16 37 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.05 1.58 5.20 -2.39 -0.01 1.57 16 39 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.07 2.51 6.85 -2.39 -0.02 2.49 16 41 H 0.07 2.46 5.84 -2.39 -0.01 2.45 16 42 H 0.05 2.13 4.18 -2.39 -0.01 2.12 16 43 H 0.07 3.12 3.81 -9.12 -0.03 3.09 16 44 H 0.27 12.03 7.60 -92.71 -0.70 11.33 16 45 H 0.16 4.11 7.64 -2.91 -0.02 4.09 16 46 H 0.19 2.57 8.06 -2.91 -0.02 2.55 16 47 H 0.16 4.21 7.65 -2.91 -0.02 4.19 16 48 H 0.43 18.61 4.05 -92.71 -0.38 18.24 16 49 H 0.09 3.06 7.02 -2.39 -0.02 3.05 16 50 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 51 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -57.53 384.06 4.47 -53.06 By element: Atomic # 1 Polarization: 36.40 SS G_CDS: 0.63 Total: 37.03 kcal Atomic # 6 Polarization: 19.75 SS G_CDS: 6.58 Total: 26.33 kcal Atomic # 7 Polarization: -108.05 SS G_CDS: -4.66 Total: -112.71 kcal Atomic # 8 Polarization: -47.38 SS G_CDS: -0.11 Total: -47.48 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.77 kcal Total: -57.53 4.47 -53.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647108058.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.815 kcal (2) G-P(sol) polarization free energy of solvation -57.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds