Wall clock time and date at job start Wed Apr 1 2020 04:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46501 * 120.00098 * 2 1 4 4 C 1.50700 * 109.46743 * 90.00098 * 3 2 1 5 5 C 1.38352 * 119.85336 * 269.72216 * 4 3 2 6 6 C 1.37958 * 120.14428 * 179.72500 * 5 4 3 7 7 C 1.39584 * 119.85179 * 0.55260 * 6 5 4 8 8 C 1.47846 * 120.14258 * 179.70019 * 7 6 5 9 9 N 1.34768 * 120.00249 * 0.02562 * 8 7 6 10 10 O 1.21555 * 119.99659 * 180.02562 * 8 7 6 11 11 C 1.39575 * 119.70885 * 359.72683 * 7 6 5 12 12 C 1.37956 * 119.85181 * 359.97438 * 11 7 6 13 13 C 1.34771 * 119.99594 * 180.02562 * 2 1 3 14 14 O 1.21593 * 120.00167 * 179.97438 * 13 2 1 15 15 N 1.34780 * 120.00532 * 359.97438 * 13 2 1 16 16 C 1.46496 * 120.00367 * 179.97438 * 15 13 2 17 17 C 1.52993 * 109.47399 * 180.02562 * 16 15 13 18 18 C 1.53005 * 109.47103 * 300.00137 * 17 16 15 19 19 C 1.52997 * 109.47158 * 59.99768 * 17 16 15 20 20 C 1.52996 * 109.47371 * 180.02562 * 17 16 15 21 21 C 1.50707 * 109.47089 * 180.02562 * 20 17 16 22 22 H 1.07994 * 120.00001 * 359.97438 * 21 20 17 23 23 C 1.37879 * 119.99596 * 180.02562 * 21 20 17 24 24 N 1.31509 * 120.00407 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99463 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47326 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47385 * 120.00044 * 25 23 21 28 28 H 1.48510 * 109.46663 * 239.99468 * 25 23 21 29 29 H 1.09001 * 109.47060 * 270.00243 * 1 2 3 30 30 H 1.09004 * 109.47073 * 29.99732 * 1 2 3 31 31 H 1.09000 * 109.47212 * 149.99814 * 1 2 3 32 32 H 1.09000 * 109.46877 * 210.00112 * 3 2 1 33 33 H 1.09000 * 109.47251 * 330.00217 * 3 2 1 34 34 H 1.07999 * 119.93073 * 0.02562 * 5 4 3 35 35 H 1.08000 * 120.08025 * 180.25544 * 6 5 4 36 36 H 0.97002 * 120.00342 * 359.97438 * 9 8 7 37 37 H 0.96998 * 120.00160 * 179.97438 * 9 8 7 38 38 H 1.07997 * 120.07195 * 179.97438 * 11 7 6 39 39 H 1.08008 * 119.92098 * 179.97438 * 12 11 7 40 40 H 0.97000 * 119.99501 * 0.02562 * 15 13 2 41 41 H 1.09004 * 109.47298 * 300.00557 * 16 15 13 42 42 H 1.09000 * 109.47160 * 60.00094 * 16 15 13 43 43 H 1.08998 * 109.46994 * 59.99826 * 18 17 16 44 44 H 1.08998 * 109.47330 * 179.97438 * 18 17 16 45 45 H 1.09000 * 109.47042 * 300.00276 * 18 17 16 46 46 H 1.09007 * 109.47146 * 60.00802 * 19 17 16 47 47 H 1.09006 * 109.47120 * 180.02562 * 19 17 16 48 48 H 1.08998 * 109.47327 * 300.00412 * 19 17 16 49 49 H 1.09007 * 109.47049 * 299.99269 * 20 17 16 50 50 H 1.09000 * 109.47576 * 59.99764 * 20 17 16 51 51 H 0.97000 * 120.00010 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7037 1.4209 5 6 1.5271 2.5072 2.0683 6 6 1.7482 2.9042 3.3708 7 6 2.9104 2.5030 4.0317 8 6 3.1570 2.9302 5.4254 9 7 2.2586 3.7082 6.0608 10 8 4.1702 2.5796 5.9982 11 6 3.8388 1.6971 3.3708 12 6 3.6025 1.3021 2.0703 13 6 2.1388 -1.1672 -0.0005 14 8 3.3548 -1.1673 -0.0010 15 7 1.4650 -2.3344 -0.0005 16 6 2.1974 -3.6032 -0.0017 17 6 1.2032 -4.7660 -0.0021 18 6 0.3240 -4.6858 1.2476 19 6 0.3231 -4.6841 -1.2508 20 6 1.9681 -6.0910 -0.0026 21 6 0.9887 -7.2365 -0.0036 22 1 -0.0730 -7.0391 -0.0034 23 6 1.4484 -8.5364 -0.0037 24 7 2.7413 -8.7768 -0.0034 25 14 0.2344 -9.9562 -0.0057 26 1 -1.1514 -9.4226 -0.0064 27 1 0.4460 -10.7868 -1.2183 28 1 0.4436 -10.7880 1.2067 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3634 -0.8900 -0.5139 32 1 3.1500 1.1383 -0.5139 33 1 1.6085 2.0284 -0.5138 34 1 0.6303 2.8203 1.5545 35 1 1.0261 3.5280 3.8766 36 1 1.4502 3.9883 5.6036 37 1 2.4202 3.9882 6.9753 38 1 4.7402 1.3836 3.8764 39 1 4.3204 0.6789 1.5576 40 1 0.4949 -2.3344 -0.0005 41 1 2.8235 -3.6605 -0.8921 42 1 2.8247 -3.6613 0.8878 43 1 -0.2209 -3.7418 1.2484 44 1 -0.3846 -5.5140 1.2471 45 1 0.9510 -4.7441 2.1373 46 1 0.9494 -4.7414 -2.1412 47 1 -0.3856 -5.5124 -1.2509 48 1 -0.2219 -3.7402 -1.2500 49 1 2.5947 -6.1485 -0.8928 50 1 2.5949 -6.1492 0.8873 51 1 3.0646 -9.6913 -0.0039 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649804163.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:00 Heat of formation + Delta-G solvation = -50.923688 kcal Electronic energy + Delta-G solvation = -30290.700704 eV Core-core repulsion = 26189.645707 eV Total energy + Delta-G solvation = -4101.054997 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.60337 -40.03615 -38.59003 -37.26951 -35.56173 -34.25342 -33.69621 -32.30710 -31.57669 -31.19410 -27.89485 -27.20775 -26.65516 -26.51888 -25.39520 -23.34455 -22.93269 -22.52012 -20.74550 -19.83423 -18.75319 -18.51665 -17.53541 -17.12043 -16.53107 -16.33948 -16.16943 -15.42412 -15.19355 -15.06158 -14.94721 -14.62441 -14.23138 -14.11156 -14.00767 -13.81127 -13.46508 -13.19535 -13.04760 -12.94648 -12.69072 -12.59441 -12.22880 -12.07364 -12.01182 -11.97738 -11.27175 -11.15547 -11.02831 -10.83833 -10.64832 -10.41815 -10.39861 -10.23881 -10.11429 -10.05768 -9.87854 -9.26719 -9.24195 -9.13773 -8.95922 -8.91302 -8.51643 -8.36007 -5.99715 -4.00988 0.47317 1.09477 2.42512 2.83316 3.11955 3.30027 3.32776 3.38157 3.40235 3.60651 4.07441 4.36383 4.40138 4.45477 4.57896 4.65430 4.81978 4.89970 5.07967 5.16832 5.26148 5.35824 5.40656 5.45645 5.50800 5.52818 5.64394 5.72839 5.74695 5.91668 6.07121 6.14956 6.16491 6.24356 6.30937 6.35648 6.37891 6.41199 6.58650 6.60702 6.62340 6.79075 6.92110 6.92362 7.06310 7.07256 7.14169 7.64980 7.77146 7.87386 7.98910 8.06776 8.40721 8.73067 9.04023 9.62098 11.11736 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014817 B = 0.002056 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.256014 B =13613.971126 C =14436.548638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.633 5.633 3 C 0.170 3.830 4 C -0.077 4.077 5 C -0.116 4.116 6 C -0.092 4.092 7 C -0.141 4.141 8 C 0.563 3.437 9 N -0.853 5.853 10 O -0.539 6.539 11 C -0.060 4.060 12 C -0.098 4.098 13 C 0.702 3.298 14 O -0.588 6.588 15 N -0.735 5.735 16 C 0.146 3.854 17 C -0.072 4.072 18 C -0.126 4.126 19 C -0.126 4.126 20 C 0.036 3.964 21 C -0.510 4.510 22 H 0.060 0.940 23 C 0.055 3.945 24 N -0.894 5.894 25 Si 0.889 3.111 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.285 1.285 29 H 0.054 0.946 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.127 0.873 35 H 0.124 0.876 36 H 0.400 0.600 37 H 0.404 0.596 38 H 0.136 0.864 39 H 0.140 0.860 40 H 0.394 0.606 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.026 0.974 44 H 0.066 0.934 45 H 0.047 0.953 46 H 0.048 0.952 47 H 0.066 0.934 48 H 0.026 0.974 49 H 0.019 0.981 50 H 0.019 0.981 51 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.995 28.453 3.556 29.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.371 5.371 3 C 0.046 3.954 4 C -0.079 4.079 5 C -0.134 4.134 6 C -0.111 4.111 7 C -0.145 4.145 8 C 0.350 3.650 9 N -0.417 5.417 10 O -0.416 6.416 11 C -0.079 4.079 12 C -0.117 4.117 13 C 0.404 3.596 14 O -0.466 6.466 15 N -0.391 5.391 16 C 0.022 3.978 17 C -0.073 4.073 18 C -0.183 4.183 19 C -0.183 4.183 20 C -0.002 4.002 21 C -0.548 4.548 22 H 0.078 0.922 23 C -0.146 4.146 24 N -0.533 5.533 25 Si 0.717 3.283 26 H -0.198 1.198 27 H -0.212 1.212 28 H -0.211 1.211 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.115 0.885 33 H 0.104 0.896 34 H 0.145 0.855 35 H 0.142 0.858 36 H 0.230 0.770 37 H 0.235 0.765 38 H 0.154 0.846 39 H 0.158 0.842 40 H 0.230 0.770 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.045 0.955 44 H 0.085 0.915 45 H 0.066 0.934 46 H 0.067 0.933 47 H 0.085 0.915 48 H 0.045 0.955 49 H 0.037 0.963 50 H 0.037 0.963 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.277 27.943 3.746 28.883 hybrid contribution -1.581 -0.621 0.282 1.722 sum -7.857 27.322 4.028 28.714 Atomic orbital electron populations 1.21734 0.79951 1.02993 1.01718 1.47005 1.06124 1.04610 1.79383 1.20248 0.98832 0.84266 0.92018 1.20595 0.94197 0.95720 0.97385 1.20949 0.99194 0.98701 0.94577 1.21182 0.95883 0.99045 0.94959 1.19877 0.97363 1.03174 0.94040 1.18354 0.82756 0.77579 0.86322 1.43751 1.24775 1.54553 1.18585 1.90832 1.27313 1.55698 1.67788 1.21345 0.98469 0.93962 0.94089 1.21324 0.97592 0.98446 0.94290 1.15945 0.85417 0.80378 0.77902 1.90894 1.11494 1.86173 1.58065 1.45524 1.09953 1.04952 1.78693 1.21500 0.94351 0.80203 1.01707 1.20909 0.95347 0.96014 0.94994 1.21749 0.99613 0.99559 0.97376 1.21751 0.99607 0.99555 0.97373 1.19093 0.95016 0.88503 0.97548 1.21213 0.92955 0.90513 1.50165 0.92228 1.25022 0.94977 0.98977 0.95600 1.69974 1.12441 1.19987 1.50902 0.86595 0.81455 0.82741 0.77524 1.19833 1.21150 1.21145 0.92785 0.90893 0.91280 0.88536 0.89585 0.85512 0.85815 0.77023 0.76470 0.84601 0.84224 0.76955 0.91988 0.91999 0.95461 0.91469 0.93355 0.93328 0.91455 0.95483 0.96300 0.96293 0.93091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.56 10.25 59.85 0.61 1.17 16 2 N -0.63 -6.68 2.86 -188.73 -0.54 -7.22 16 3 C 0.17 1.51 5.57 -5.19 -0.03 1.48 16 4 C -0.08 -0.72 5.47 -104.54 -0.57 -1.29 16 5 C -0.12 -0.83 9.68 -39.64 -0.38 -1.21 16 6 C -0.09 -0.65 9.54 -39.18 -0.37 -1.02 16 7 C -0.14 -1.40 5.87 -104.97 -0.62 -2.01 16 8 C 0.56 5.86 8.05 -12.33 -0.10 5.76 16 9 N -0.85 -4.83 8.82 30.53 0.27 -4.56 16 10 O -0.54 -7.90 17.18 5.32 0.09 -7.81 16 11 C -0.06 -0.68 9.60 -39.19 -0.38 -1.06 16 12 C -0.10 -1.11 9.68 -39.64 -0.38 -1.50 16 13 C 0.70 10.45 8.28 -86.92 -0.72 9.73 16 14 O -0.59 -10.85 15.43 5.28 0.08 -10.76 16 15 N -0.74 -10.69 4.82 -65.23 -0.31 -11.01 16 16 C 0.15 2.59 4.56 -4.05 -0.02 2.57 16 17 C -0.07 -1.36 0.54 -154.51 -0.08 -1.44 16 18 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 19 C -0.13 -2.16 8.05 37.16 0.30 -1.86 16 20 C 0.04 0.88 4.04 -27.88 -0.11 0.77 16 21 C -0.51 -13.47 7.65 -34.44 -0.26 -13.73 16 22 H 0.06 1.51 5.68 -52.49 -0.30 1.21 16 23 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 24 N -0.89 -26.40 13.29 55.43 0.74 -25.66 16 25 Si 0.89 21.15 29.54 -169.99 -5.02 16.12 16 26 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 28 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.33 7.89 -51.93 -0.41 -0.08 16 31 H 0.07 0.49 6.36 -51.93 -0.33 0.16 16 32 H 0.10 1.00 7.36 -51.93 -0.38 0.62 16 33 H 0.09 0.49 7.83 -51.93 -0.41 0.08 16 34 H 0.13 0.57 8.06 -52.49 -0.42 0.14 16 35 H 0.12 0.44 6.41 -52.49 -0.34 0.10 16 36 H 0.40 1.05 6.86 -40.82 -0.28 0.77 16 37 H 0.40 1.81 8.93 -40.82 -0.36 1.44 16 38 H 0.14 1.62 7.65 -52.49 -0.40 1.22 16 39 H 0.14 1.77 7.56 -52.48 -0.40 1.37 16 40 H 0.39 4.86 3.89 -40.82 -0.16 4.70 16 41 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.03 0.38 6.86 -51.93 -0.36 0.03 16 44 H 0.07 1.26 6.62 -51.93 -0.34 0.91 16 45 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 46 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 47 H 0.07 1.25 6.62 -51.93 -0.34 0.90 16 48 H 0.03 0.37 6.86 -51.93 -0.36 0.02 16 49 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 50 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 51 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 410.34 15.07 6.18 6.18 Total: -1.00 -35.36 410.34 -9.11 -44.47 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -7.68 Total: 4.36 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: -2.92 Total: -4.11 kcal Atomic # 7 Polarization: -48.60 SS G_CDS: 0.15 Total: -48.45 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: 0.17 Total: -18.57 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -35.36 -9.11 -44.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649804163.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.450 kcal (2) G-P(sol) polarization free energy of solvation -35.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds