Wall clock time and date at job start Wed Apr 1 2020 05:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46858 * 2 1 4 4 C 1.52995 * 109.46977 * 120.00143 * 2 1 3 5 5 H 1.09003 * 109.47022 * 300.00127 * 4 2 1 6 6 C 1.52998 * 109.47443 * 60.00215 * 4 2 1 7 7 N 1.46500 * 109.47304 * 174.99839 * 6 4 2 8 8 C 1.34776 * 119.99630 * 179.97438 * 7 6 4 9 9 O 1.21576 * 120.00524 * 0.02562 * 8 7 6 10 10 C 1.47611 * 119.99337 * 179.97438 * 8 7 6 11 11 C 1.39696 * 120.10303 * 359.73246 * 10 8 7 12 12 C 1.37702 * 119.88790 * 179.80746 * 11 10 8 13 13 C 1.39089 * 120.40728 * 0.56045 * 12 11 10 14 14 C 1.39249 * 120.10047 * 359.56426 * 13 12 11 15 15 C 1.38731 * 119.67008 * 0.20783 * 14 13 12 16 16 N 1.39910 * 121.84803 * 180.39775 * 14 13 12 17 17 C 1.46891 * 111.00053 * 104.78816 * 16 14 13 18 18 C 1.46754 * 112.11801 * 340.01100 * 16 14 13 19 19 C 1.53419 * 108.59186 * 50.20863 * 18 16 14 20 20 O 1.36000 * 118.58431 * 179.42799 * 13 12 11 21 21 N 1.46498 * 109.47120 * 180.02562 * 4 2 1 22 22 C 1.36935 * 120.00239 * 84.99640 * 21 4 2 23 23 H 1.08004 * 120.00069 * 0.02562 * 22 21 4 24 24 C 1.38811 * 120.00368 * 180.02562 * 22 21 4 25 25 N 1.31624 * 119.99540 * 359.72375 * 24 22 21 26 26 Si 1.86800 * 120.00451 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47364 * 179.72253 * 26 24 22 28 28 H 1.48508 * 109.46883 * 299.72375 * 26 24 22 29 29 H 1.48497 * 109.46870 * 59.72186 * 26 24 22 30 30 H 1.09003 * 109.47348 * 299.99929 * 1 2 3 31 31 H 1.09004 * 109.47447 * 60.00101 * 1 2 3 32 32 H 1.08999 * 109.47360 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.46986 * 240.00225 * 2 1 3 34 34 H 1.08994 * 109.47070 * 179.97438 * 3 2 1 35 35 H 1.09003 * 109.47532 * 300.00174 * 3 2 1 36 36 H 1.09003 * 109.47082 * 59.99909 * 3 2 1 37 37 H 1.09008 * 109.46958 * 295.00113 * 6 4 2 38 38 H 1.08993 * 109.47007 * 54.99576 * 6 4 2 39 39 H 0.96999 * 119.99793 * 0.02562 * 7 6 4 40 40 H 1.07997 * 120.05579 * 0.07513 * 11 10 8 41 41 H 1.07998 * 119.79847 * 180.27651 * 12 11 10 42 42 H 1.07999 * 119.93438 * 179.91451 * 15 14 13 43 43 H 1.08999 * 109.47293 * 59.99955 * 17 16 14 44 44 H 1.09001 * 109.47569 * 180.02562 * 17 16 14 45 45 H 1.09003 * 109.47451 * 300.00443 * 17 16 14 46 46 H 1.08996 * 109.61325 * 169.93830 * 18 16 14 47 47 H 1.09004 * 109.61697 * 290.47506 * 18 16 14 48 48 H 1.09000 * 109.77161 * 56.28059 * 19 18 16 49 49 H 1.08993 * 109.77246 * 177.07201 * 19 18 16 50 50 H 0.97004 * 119.99747 * 265.00379 * 21 4 2 51 51 H 0.97000 * 120.00481 * 0.27542 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6766 -0.2074 2.1392 6 6 1.5301 -2.1638 1.2492 7 7 2.1142 -2.8883 2.3806 8 6 1.8053 -4.1845 2.5825 9 8 1.0422 -4.7527 1.8256 10 6 2.3943 -4.9146 3.7222 11 6 3.2765 -4.2656 4.5894 12 6 3.8204 -4.9498 5.6535 13 6 3.5061 -6.2882 5.8646 14 6 2.6297 -6.9439 5.0038 15 6 2.0760 -6.2569 3.9333 16 7 2.2818 -8.2867 5.1866 17 6 0.9235 -8.4091 5.7323 18 6 3.2520 -8.9995 6.0258 19 6 3.4897 -8.1811 7.3015 20 8 4.0735 -6.9312 6.9202 21 7 3.5050 -0.7207 1.2495 22 6 4.1892 0.3542 1.7510 23 1 3.6488 1.2015 2.1466 24 6 5.5773 0.3549 1.7508 25 7 6.2358 -0.6800 1.2736 26 14 6.5107 1.8210 2.4355 27 1 7.9708 1.5730 2.3266 28 1 6.1563 3.0384 1.6624 29 1 6.1470 2.0171 3.8618 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1299 1.4425 0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 0.4437 -2.1651 1.3387 38 1 1.8184 -2.6510 0.3178 39 1 2.7227 -2.4348 2.9848 40 1 3.5282 -3.2279 4.4281 41 1 4.4988 -4.4455 6.3257 42 1 1.3968 -6.7616 3.2622 43 1 0.2125 -7.9546 5.0424 44 1 0.6788 -9.4629 5.8650 45 1 0.8715 -7.9004 6.6949 46 1 2.8569 -9.9807 6.2889 47 1 4.1908 -9.1134 5.4838 48 1 2.5412 -8.0054 7.8090 49 1 4.1687 -8.7186 7.9633 50 1 3.9903 -1.4819 0.8944 51 1 5.7512 -1.4415 0.9184 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667469873.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:09 Heat of formation + Delta-G solvation = -29.130850 kcal Electronic energy + Delta-G solvation = -31033.357799 eV Core-core repulsion = 26933.247811 eV Total energy + Delta-G solvation = -4100.109988 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.42272 -39.61983 -37.61815 -36.99017 -36.74401 -33.97646 -33.43707 -31.33508 -30.64650 -30.19869 -29.08023 -27.85940 -26.18795 -25.70065 -24.67636 -23.71833 -22.84180 -21.89110 -21.26834 -19.87470 -19.24066 -18.37292 -17.71480 -17.31473 -17.06388 -16.20750 -15.66681 -15.42196 -15.17714 -14.92625 -14.78471 -14.61683 -14.30366 -13.92404 -13.91484 -13.75770 -13.62792 -13.46901 -13.27654 -13.03168 -12.56246 -12.44177 -12.28332 -12.22004 -11.98982 -11.77381 -11.65800 -11.29355 -11.24671 -11.11749 -10.92957 -10.79461 -10.41982 -10.16517 -10.07145 -9.89810 -9.71621 -9.63790 -9.21591 -8.92792 -8.75180 -8.51923 -8.17245 -7.10229 -6.12541 -3.14637 0.83562 1.18304 2.86991 2.95688 3.24927 3.48989 3.50838 3.56918 3.69129 3.85570 4.13311 4.48891 4.53486 4.59168 4.62227 4.88280 4.90680 4.99862 5.05509 5.11772 5.14772 5.27236 5.29002 5.33870 5.39735 5.47789 5.50231 5.59096 5.71872 5.74420 5.83361 5.91263 5.95883 6.04037 6.13681 6.17303 6.25191 6.31698 6.34898 6.38278 6.48353 6.51737 6.57211 6.62691 6.72613 6.86755 7.01013 7.16444 7.26714 7.77792 7.87373 8.50128 8.70994 9.15608 10.02476 10.17567 11.34219 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011775 B = 0.002835 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.297463 B = 9872.510661 C =11824.708582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.109 4.109 3 C -0.138 4.138 4 C 0.175 3.825 5 H 0.055 0.945 6 C 0.112 3.888 7 N -0.709 5.709 8 C 0.558 3.442 9 O -0.552 6.552 10 C -0.149 4.149 11 C -0.055 4.055 12 C -0.137 4.137 13 C 0.110 3.890 14 C 0.010 3.990 15 C -0.023 4.023 16 N -0.489 5.489 17 C 0.022 3.978 18 C 0.015 3.985 19 C 0.020 3.980 20 O -0.306 6.306 21 N -0.733 5.733 22 C -0.328 4.328 23 H 0.067 0.933 24 C -0.042 4.042 25 N -0.940 5.940 26 Si 1.074 2.926 27 H -0.286 1.286 28 H -0.296 1.296 29 H -0.296 1.296 30 H 0.049 0.951 31 H 0.046 0.954 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.087 0.913 35 H 0.031 0.969 36 H 0.040 0.960 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.409 0.591 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.142 0.858 43 H 0.079 0.921 44 H 0.077 0.923 45 H 0.033 0.967 46 H 0.100 0.900 47 H 0.096 0.904 48 H 0.067 0.933 49 H 0.115 0.885 50 H 0.368 0.632 51 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.895 -13.356 11.117 19.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.131 4.131 3 C -0.195 4.195 4 C 0.065 3.935 5 H 0.073 0.927 6 C -0.012 4.012 7 N -0.360 5.360 8 C 0.345 3.655 9 O -0.432 6.432 10 C -0.153 4.153 11 C -0.075 4.075 12 C -0.156 4.156 13 C 0.062 3.938 14 C -0.086 4.086 15 C -0.044 4.044 16 N -0.206 5.206 17 C -0.123 4.123 18 C -0.113 4.113 19 C -0.057 4.057 20 O -0.219 6.219 21 N -0.375 5.375 22 C -0.459 4.459 23 H 0.085 0.915 24 C -0.240 4.240 25 N -0.585 5.585 26 Si 0.906 3.094 27 H -0.212 1.212 28 H -0.223 1.223 29 H -0.223 1.223 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.105 0.895 35 H 0.050 0.950 36 H 0.060 0.940 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.246 0.754 40 H 0.158 0.842 41 H 0.157 0.843 42 H 0.160 0.840 43 H 0.098 0.902 44 H 0.096 0.904 45 H 0.051 0.949 46 H 0.118 0.882 47 H 0.114 0.886 48 H 0.085 0.915 49 H 0.133 0.867 50 H 0.201 0.799 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -8.857 -13.131 10.639 19.080 hybrid contribution -1.192 -0.403 0.489 1.350 sum -10.049 -13.533 11.128 20.198 Atomic orbital electron populations 1.21942 0.96761 1.00988 1.00998 1.21713 0.93628 0.97881 0.99837 1.21810 1.04256 0.94497 0.98973 1.20487 0.85824 0.91052 0.96159 0.92734 1.21780 0.97500 0.93176 0.88731 1.45918 1.48480 1.10721 1.30903 1.18078 0.81107 0.81878 0.84406 1.90734 1.36914 1.68080 1.47466 1.19772 1.02341 0.94874 0.98303 1.21242 0.93564 1.00224 0.92420 1.20404 1.03736 0.90991 1.00489 1.19270 0.96125 0.91703 0.86709 1.18544 1.03329 0.89206 0.97504 1.20844 0.97325 0.92261 0.93928 1.59195 1.03421 1.09741 1.48221 1.22618 0.88479 1.02513 0.98738 1.22993 0.97779 0.98006 0.92474 1.23591 1.00034 0.84336 0.97784 1.86295 1.54651 1.34930 1.46006 1.42479 0.99419 1.20943 1.74705 1.19975 0.91550 0.97335 1.37060 0.91491 1.25676 0.93395 1.03678 1.01239 1.70885 1.37407 1.07046 1.43162 0.83311 0.76431 0.74227 0.75464 1.21160 1.22323 1.22310 0.93147 0.93494 0.93028 0.92059 0.89466 0.95018 0.94048 0.91350 0.91869 0.75386 0.84201 0.84304 0.84002 0.90214 0.90441 0.94881 0.88183 0.88592 0.91491 0.86703 0.79852 0.93272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 8.84 37.16 0.33 -1.78 16 2 C -0.11 -1.86 2.69 -90.62 -0.24 -2.11 16 3 C -0.14 -2.50 8.26 37.16 0.31 -2.20 16 4 C 0.18 3.21 2.18 -67.93 -0.15 3.06 16 5 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 6 C 0.11 1.92 4.73 -4.04 -0.02 1.90 16 7 N -0.71 -11.98 5.34 -61.33 -0.33 -12.31 16 8 C 0.56 9.70 7.76 -12.44 -0.10 9.61 16 9 O -0.55 -10.97 16.33 5.30 0.09 -10.89 16 10 C -0.15 -2.27 5.87 -105.04 -0.62 -2.89 16 11 C -0.06 -0.77 9.53 -39.23 -0.37 -1.15 16 12 C -0.14 -1.81 9.92 -39.46 -0.39 -2.20 16 13 C 0.11 1.43 6.48 -38.89 -0.25 1.18 16 14 C 0.01 0.13 5.12 -83.61 -0.43 -0.30 16 15 C -0.02 -0.33 9.00 -38.91 -0.35 -0.68 16 16 N -0.49 -5.09 4.86 -178.69 -0.87 -5.96 16 17 C 0.02 0.18 9.19 60.06 0.55 0.73 16 18 C 0.02 0.12 6.02 -3.69 -0.02 0.10 16 19 C 0.02 0.15 7.06 37.37 0.26 0.42 16 20 O -0.31 -3.59 10.39 -19.74 -0.21 -3.80 16 21 N -0.73 -16.35 4.44 -53.43 -0.24 -16.58 16 22 C -0.33 -8.24 7.57 -15.06 -0.11 -8.36 16 23 H 0.07 1.67 7.40 -52.48 -0.39 1.28 16 24 C -0.04 -1.12 5.50 -17.43 -0.10 -1.22 16 25 N -0.94 -27.47 13.70 55.49 0.76 -26.71 16 26 Si 1.07 24.66 29.92 -169.99 -5.09 19.58 16 27 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 28 H -0.30 -6.56 7.11 56.52 0.40 -6.15 16 29 H -0.30 -6.48 7.11 56.52 0.40 -6.08 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.69 6.55 -51.93 -0.34 0.35 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.09 1.88 6.01 -51.93 -0.31 1.57 16 35 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 1.10 6.71 -51.92 -0.35 0.75 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 39 H 0.41 6.89 6.16 -40.82 -0.25 6.64 16 40 H 0.14 1.91 6.40 -52.49 -0.34 1.57 16 41 H 0.14 1.63 8.06 -52.49 -0.42 1.21 16 42 H 0.14 2.05 7.63 -52.49 -0.40 1.65 16 43 H 0.08 0.68 7.85 -51.93 -0.41 0.28 16 44 H 0.08 0.45 7.98 -51.93 -0.41 0.04 16 45 H 0.03 0.26 6.90 -51.93 -0.36 -0.10 16 46 H 0.10 0.51 7.90 -51.93 -0.41 0.10 16 47 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 48 H 0.07 0.48 6.80 -51.93 -0.35 0.12 16 49 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.37 8.82 6.63 -40.82 -0.27 8.55 16 51 H 0.26 7.43 6.77 -40.82 -0.28 7.15 16 LS Contribution 400.98 15.07 6.04 6.04 Total: -1.00 -31.12 400.98 -9.42 -40.54 By element: Atomic # 1 Polarization: 23.84 SS G_CDS: -7.89 Total: 15.95 kcal Atomic # 6 Polarization: -4.17 SS G_CDS: -1.70 Total: -5.87 kcal Atomic # 7 Polarization: -60.89 SS G_CDS: -0.67 Total: -61.56 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: -0.12 Total: -14.68 kcal Atomic # 14 Polarization: 24.66 SS G_CDS: -5.09 Total: 19.58 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.12 -9.42 -40.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667469873.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.412 kcal (2) G-P(sol) polarization free energy of solvation -31.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds