Wall clock time and date at job start Wed Apr 1 2020 05:25:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.52998 * 109.46858 * 2 1
4 4 C 1.52995 * 109.46977 * 120.00143 * 2 1 3
5 5 H 1.09003 * 109.47022 * 300.00127 * 4 2 1
6 6 C 1.52998 * 109.47443 * 60.00215 * 4 2 1
7 7 N 1.46500 * 109.47304 * 174.99839 * 6 4 2
8 8 C 1.34776 * 119.99630 * 179.97438 * 7 6 4
9 9 O 1.21576 * 120.00524 * 0.02562 * 8 7 6
10 10 C 1.47611 * 119.99337 * 179.97438 * 8 7 6
11 11 C 1.39696 * 120.10303 * 359.73246 * 10 8 7
12 12 C 1.37702 * 119.88790 * 179.80746 * 11 10 8
13 13 C 1.39089 * 120.40728 * 0.56045 * 12 11 10
14 14 C 1.39249 * 120.10047 * 359.56426 * 13 12 11
15 15 C 1.38731 * 119.67008 * 0.20783 * 14 13 12
16 16 N 1.39910 * 121.84803 * 180.39775 * 14 13 12
17 17 C 1.46891 * 111.00053 * 104.78816 * 16 14 13
18 18 C 1.46754 * 112.11801 * 340.01100 * 16 14 13
19 19 C 1.53419 * 108.59186 * 50.20863 * 18 16 14
20 20 O 1.36000 * 118.58431 * 179.42799 * 13 12 11
21 21 N 1.46498 * 109.47120 * 180.02562 * 4 2 1
22 22 C 1.36935 * 120.00239 * 84.99640 * 21 4 2
23 23 H 1.08004 * 120.00069 * 0.02562 * 22 21 4
24 24 C 1.38811 * 120.00368 * 180.02562 * 22 21 4
25 25 N 1.31624 * 119.99540 * 359.72375 * 24 22 21
26 26 Si 1.86800 * 120.00451 * 180.02562 * 24 22 21
27 27 H 1.48501 * 109.47364 * 179.72253 * 26 24 22
28 28 H 1.48508 * 109.46883 * 299.72375 * 26 24 22
29 29 H 1.48497 * 109.46870 * 59.72186 * 26 24 22
30 30 H 1.09003 * 109.47348 * 299.99929 * 1 2 3
31 31 H 1.09004 * 109.47447 * 60.00101 * 1 2 3
32 32 H 1.08999 * 109.47360 * 179.97438 * 1 2 3
33 33 H 1.08996 * 109.46986 * 240.00225 * 2 1 3
34 34 H 1.08994 * 109.47070 * 179.97438 * 3 2 1
35 35 H 1.09003 * 109.47532 * 300.00174 * 3 2 1
36 36 H 1.09003 * 109.47082 * 59.99909 * 3 2 1
37 37 H 1.09008 * 109.46958 * 295.00113 * 6 4 2
38 38 H 1.08993 * 109.47007 * 54.99576 * 6 4 2
39 39 H 0.96999 * 119.99793 * 0.02562 * 7 6 4
40 40 H 1.07997 * 120.05579 * 0.07513 * 11 10 8
41 41 H 1.07998 * 119.79847 * 180.27651 * 12 11 10
42 42 H 1.07999 * 119.93438 * 179.91451 * 15 14 13
43 43 H 1.08999 * 109.47293 * 59.99955 * 17 16 14
44 44 H 1.09001 * 109.47569 * 180.02562 * 17 16 14
45 45 H 1.09003 * 109.47451 * 300.00443 * 17 16 14
46 46 H 1.08996 * 109.61325 * 169.93830 * 18 16 14
47 47 H 1.09004 * 109.61697 * 290.47506 * 18 16 14
48 48 H 1.09000 * 109.77161 * 56.28059 * 19 18 16
49 49 H 1.08993 * 109.77246 * 177.07201 * 19 18 16
50 50 H 0.97004 * 119.99747 * 265.00379 * 21 4 2
51 51 H 0.97000 * 120.00481 * 0.27542 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7213 1.2492
5 1 1.6766 -0.2074 2.1392
6 6 1.5301 -2.1638 1.2492
7 7 2.1142 -2.8883 2.3806
8 6 1.8053 -4.1845 2.5825
9 8 1.0422 -4.7527 1.8256
10 6 2.3943 -4.9146 3.7222
11 6 3.2765 -4.2656 4.5894
12 6 3.8204 -4.9498 5.6535
13 6 3.5061 -6.2882 5.8646
14 6 2.6297 -6.9439 5.0038
15 6 2.0760 -6.2569 3.9333
16 7 2.2818 -8.2867 5.1866
17 6 0.9235 -8.4091 5.7323
18 6 3.2520 -8.9995 6.0258
19 6 3.4897 -8.1811 7.3015
20 8 4.0735 -6.9312 6.9202
21 7 3.5050 -0.7207 1.2495
22 6 4.1892 0.3542 1.7510
23 1 3.6488 1.2015 2.1466
24 6 5.5773 0.3549 1.7508
25 7 6.2358 -0.6800 1.2736
26 14 6.5107 1.8210 2.4355
27 1 7.9708 1.5730 2.3266
28 1 6.1563 3.0384 1.6624
29 1 6.1470 2.0171 3.8618
30 1 -0.3634 0.5138 0.8900
31 1 -0.3634 0.5138 -0.8900
32 1 -0.3634 -1.0276 -0.0005
33 1 1.8933 -0.5138 -0.8900
34 1 3.1299 1.4425 0.0005
35 1 1.6766 1.9564 -0.8900
36 1 1.6766 1.9563 0.8900
37 1 0.4437 -2.1651 1.3387
38 1 1.8184 -2.6510 0.3178
39 1 2.7227 -2.4348 2.9848
40 1 3.5282 -3.2279 4.4281
41 1 4.4988 -4.4455 6.3257
42 1 1.3968 -6.7616 3.2622
43 1 0.2125 -7.9546 5.0424
44 1 0.6788 -9.4629 5.8650
45 1 0.8715 -7.9004 6.6949
46 1 2.8569 -9.9807 6.2889
47 1 4.1908 -9.1134 5.4838
48 1 2.5412 -8.0054 7.8090
49 1 4.1687 -8.7186 7.9633
50 1 3.9903 -1.4819 0.8944
51 1 5.7512 -1.4415 0.9184
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001667469873.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:25:09
Heat of formation + Delta-G solvation = -29.130850 kcal
Electronic energy + Delta-G solvation = -31033.357799 eV
Core-core repulsion = 26933.247811 eV
Total energy + Delta-G solvation = -4100.109988 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.93 seconds
Orbital eigenvalues (eV)
-41.42272 -39.61983 -37.61815 -36.99017 -36.74401 -33.97646 -33.43707 -31.33508
-30.64650 -30.19869 -29.08023 -27.85940 -26.18795 -25.70065 -24.67636 -23.71833
-22.84180 -21.89110 -21.26834 -19.87470 -19.24066 -18.37292 -17.71480 -17.31473
-17.06388 -16.20750 -15.66681 -15.42196 -15.17714 -14.92625 -14.78471 -14.61683
-14.30366 -13.92404 -13.91484 -13.75770 -13.62792 -13.46901 -13.27654 -13.03168
-12.56246 -12.44177 -12.28332 -12.22004 -11.98982 -11.77381 -11.65800 -11.29355
-11.24671 -11.11749 -10.92957 -10.79461 -10.41982 -10.16517 -10.07145 -9.89810
-9.71621 -9.63790 -9.21591 -8.92792 -8.75180 -8.51923 -8.17245 -7.10229
-6.12541 -3.14637 0.83562 1.18304 2.86991 2.95688 3.24927 3.48989
3.50838 3.56918 3.69129 3.85570 4.13311 4.48891 4.53486 4.59168
4.62227 4.88280 4.90680 4.99862 5.05509 5.11772 5.14772 5.27236
5.29002 5.33870 5.39735 5.47789 5.50231 5.59096 5.71872 5.74420
5.83361 5.91263 5.95883 6.04037 6.13681 6.17303 6.25191 6.31698
6.34898 6.38278 6.48353 6.51737 6.57211 6.62691 6.72613 6.86755
7.01013 7.16444 7.26714 7.77792 7.87373 8.50128 8.70994 9.15608
10.02476 10.17567 11.34219
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.011775 B = 0.002835 C = 0.002367
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2377.297463 B = 9872.510661 C =11824.708582
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.109 4.109
3 C -0.138 4.138
4 C 0.175 3.825
5 H 0.055 0.945
6 C 0.112 3.888
7 N -0.709 5.709
8 C 0.558 3.442
9 O -0.552 6.552
10 C -0.149 4.149
11 C -0.055 4.055
12 C -0.137 4.137
13 C 0.110 3.890
14 C 0.010 3.990
15 C -0.023 4.023
16 N -0.489 5.489
17 C 0.022 3.978
18 C 0.015 3.985
19 C 0.020 3.980
20 O -0.306 6.306
21 N -0.733 5.733
22 C -0.328 4.328
23 H 0.067 0.933
24 C -0.042 4.042
25 N -0.940 5.940
26 Si 1.074 2.926
27 H -0.286 1.286
28 H -0.296 1.296
29 H -0.296 1.296
30 H 0.049 0.951
31 H 0.046 0.954
32 H 0.051 0.949
33 H 0.061 0.939
34 H 0.087 0.913
35 H 0.031 0.969
36 H 0.040 0.960
37 H 0.068 0.932
38 H 0.063 0.937
39 H 0.409 0.591
40 H 0.140 0.860
41 H 0.139 0.861
42 H 0.142 0.858
43 H 0.079 0.921
44 H 0.077 0.923
45 H 0.033 0.967
46 H 0.100 0.900
47 H 0.096 0.904
48 H 0.067 0.933
49 H 0.115 0.885
50 H 0.368 0.632
51 H 0.256 0.744
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.895 -13.356 11.117 19.997
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.131 4.131
3 C -0.195 4.195
4 C 0.065 3.935
5 H 0.073 0.927
6 C -0.012 4.012
7 N -0.360 5.360
8 C 0.345 3.655
9 O -0.432 6.432
10 C -0.153 4.153
11 C -0.075 4.075
12 C -0.156 4.156
13 C 0.062 3.938
14 C -0.086 4.086
15 C -0.044 4.044
16 N -0.206 5.206
17 C -0.123 4.123
18 C -0.113 4.113
19 C -0.057 4.057
20 O -0.219 6.219
21 N -0.375 5.375
22 C -0.459 4.459
23 H 0.085 0.915
24 C -0.240 4.240
25 N -0.585 5.585
26 Si 0.906 3.094
27 H -0.212 1.212
28 H -0.223 1.223
29 H -0.223 1.223
30 H 0.069 0.931
31 H 0.065 0.935
32 H 0.070 0.930
33 H 0.079 0.921
34 H 0.105 0.895
35 H 0.050 0.950
36 H 0.060 0.940
37 H 0.087 0.913
38 H 0.081 0.919
39 H 0.246 0.754
40 H 0.158 0.842
41 H 0.157 0.843
42 H 0.160 0.840
43 H 0.098 0.902
44 H 0.096 0.904
45 H 0.051 0.949
46 H 0.118 0.882
47 H 0.114 0.886
48 H 0.085 0.915
49 H 0.133 0.867
50 H 0.201 0.799
51 H 0.067 0.933
Dipole moment (debyes) X Y Z Total
from point charges -8.857 -13.131 10.639 19.080
hybrid contribution -1.192 -0.403 0.489 1.350
sum -10.049 -13.533 11.128 20.198
Atomic orbital electron populations
1.21942 0.96761 1.00988 1.00998 1.21713 0.93628 0.97881 0.99837
1.21810 1.04256 0.94497 0.98973 1.20487 0.85824 0.91052 0.96159
0.92734 1.21780 0.97500 0.93176 0.88731 1.45918 1.48480 1.10721
1.30903 1.18078 0.81107 0.81878 0.84406 1.90734 1.36914 1.68080
1.47466 1.19772 1.02341 0.94874 0.98303 1.21242 0.93564 1.00224
0.92420 1.20404 1.03736 0.90991 1.00489 1.19270 0.96125 0.91703
0.86709 1.18544 1.03329 0.89206 0.97504 1.20844 0.97325 0.92261
0.93928 1.59195 1.03421 1.09741 1.48221 1.22618 0.88479 1.02513
0.98738 1.22993 0.97779 0.98006 0.92474 1.23591 1.00034 0.84336
0.97784 1.86295 1.54651 1.34930 1.46006 1.42479 0.99419 1.20943
1.74705 1.19975 0.91550 0.97335 1.37060 0.91491 1.25676 0.93395
1.03678 1.01239 1.70885 1.37407 1.07046 1.43162 0.83311 0.76431
0.74227 0.75464 1.21160 1.22323 1.22310 0.93147 0.93494 0.93028
0.92059 0.89466 0.95018 0.94048 0.91350 0.91869 0.75386 0.84201
0.84304 0.84002 0.90214 0.90441 0.94881 0.88183 0.88592 0.91491
0.86703 0.79852 0.93272
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.11 8.84 37.16 0.33 -1.78 16
2 C -0.11 -1.86 2.69 -90.62 -0.24 -2.11 16
3 C -0.14 -2.50 8.26 37.16 0.31 -2.20 16
4 C 0.18 3.21 2.18 -67.93 -0.15 3.06 16
5 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16
6 C 0.11 1.92 4.73 -4.04 -0.02 1.90 16
7 N -0.71 -11.98 5.34 -61.33 -0.33 -12.31 16
8 C 0.56 9.70 7.76 -12.44 -0.10 9.61 16
9 O -0.55 -10.97 16.33 5.30 0.09 -10.89 16
10 C -0.15 -2.27 5.87 -105.04 -0.62 -2.89 16
11 C -0.06 -0.77 9.53 -39.23 -0.37 -1.15 16
12 C -0.14 -1.81 9.92 -39.46 -0.39 -2.20 16
13 C 0.11 1.43 6.48 -38.89 -0.25 1.18 16
14 C 0.01 0.13 5.12 -83.61 -0.43 -0.30 16
15 C -0.02 -0.33 9.00 -38.91 -0.35 -0.68 16
16 N -0.49 -5.09 4.86 -178.69 -0.87 -5.96 16
17 C 0.02 0.18 9.19 60.06 0.55 0.73 16
18 C 0.02 0.12 6.02 -3.69 -0.02 0.10 16
19 C 0.02 0.15 7.06 37.37 0.26 0.42 16
20 O -0.31 -3.59 10.39 -19.74 -0.21 -3.80 16
21 N -0.73 -16.35 4.44 -53.43 -0.24 -16.58 16
22 C -0.33 -8.24 7.57 -15.06 -0.11 -8.36 16
23 H 0.07 1.67 7.40 -52.48 -0.39 1.28 16
24 C -0.04 -1.12 5.50 -17.43 -0.10 -1.22 16
25 N -0.94 -27.47 13.70 55.49 0.76 -26.71 16
26 Si 1.07 24.66 29.92 -169.99 -5.09 19.58 16
27 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16
28 H -0.30 -6.56 7.11 56.52 0.40 -6.15 16
29 H -0.30 -6.48 7.11 56.52 0.40 -6.08 16
30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16
31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16
32 H 0.05 0.69 6.55 -51.93 -0.34 0.35 16
33 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16
34 H 0.09 1.88 6.01 -51.93 -0.31 1.57 16
35 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16
36 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16
37 H 0.07 1.10 6.71 -51.92 -0.35 0.75 16
38 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16
39 H 0.41 6.89 6.16 -40.82 -0.25 6.64 16
40 H 0.14 1.91 6.40 -52.49 -0.34 1.57 16
41 H 0.14 1.63 8.06 -52.49 -0.42 1.21 16
42 H 0.14 2.05 7.63 -52.49 -0.40 1.65 16
43 H 0.08 0.68 7.85 -51.93 -0.41 0.28 16
44 H 0.08 0.45 7.98 -51.93 -0.41 0.04 16
45 H 0.03 0.26 6.90 -51.93 -0.36 -0.10 16
46 H 0.10 0.51 7.90 -51.93 -0.41 0.10 16
47 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16
48 H 0.07 0.48 6.80 -51.93 -0.35 0.12 16
49 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16
50 H 0.37 8.82 6.63 -40.82 -0.27 8.55 16
51 H 0.26 7.43 6.77 -40.82 -0.28 7.15 16
LS Contribution 400.98 15.07 6.04 6.04
Total: -1.00 -31.12 400.98 -9.42 -40.54
By element:
Atomic # 1 Polarization: 23.84 SS G_CDS: -7.89 Total: 15.95 kcal
Atomic # 6 Polarization: -4.17 SS G_CDS: -1.70 Total: -5.87 kcal
Atomic # 7 Polarization: -60.89 SS G_CDS: -0.67 Total: -61.56 kcal
Atomic # 8 Polarization: -14.57 SS G_CDS: -0.12 Total: -14.68 kcal
Atomic # 14 Polarization: 24.66 SS G_CDS: -5.09 Total: 19.58 kcal
Total LS contribution 6.04 Total: 6.04 kcal
Total: -31.12 -9.42 -40.54 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001667469873.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 11.412 kcal
(2) G-P(sol) polarization free energy of solvation -31.121 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.709 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.422 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.543 kcal
(6) G-S(sol) free energy of system = (1) + (5) -29.131 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.94 seconds