Wall clock time and date at job start Wed Apr 1 2020 05:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46858 * 2 1 4 4 C 1.52995 * 109.46977 * 120.00143 * 2 1 3 5 5 H 1.09003 * 109.47022 * 300.00127 * 4 2 1 6 6 C 1.52998 * 109.47443 * 60.00215 * 4 2 1 7 7 N 1.46500 * 109.47304 * 174.99839 * 6 4 2 8 8 C 1.34776 * 119.99630 * 179.97438 * 7 6 4 9 9 O 1.21576 * 120.00524 * 0.02562 * 8 7 6 10 10 C 1.47611 * 119.99337 * 179.97438 * 8 7 6 11 11 C 1.39696 * 120.10303 * 359.73246 * 10 8 7 12 12 C 1.37702 * 119.88790 * 179.80746 * 11 10 8 13 13 C 1.39089 * 120.40728 * 0.56045 * 12 11 10 14 14 C 1.39249 * 120.10047 * 359.56426 * 13 12 11 15 15 C 1.38731 * 119.67008 * 0.20783 * 14 13 12 16 16 N 1.39910 * 121.84803 * 180.39775 * 14 13 12 17 17 C 1.46891 * 111.00053 * 104.78816 * 16 14 13 18 18 C 1.46754 * 112.11801 * 340.01100 * 16 14 13 19 19 C 1.53419 * 108.59186 * 50.20863 * 18 16 14 20 20 O 1.36000 * 118.58431 * 179.42799 * 13 12 11 21 21 N 1.46498 * 109.47120 * 180.02562 * 4 2 1 22 22 C 1.36935 * 120.00239 * 84.99640 * 21 4 2 23 23 H 1.08004 * 120.00069 * 0.02562 * 22 21 4 24 24 C 1.38811 * 120.00368 * 180.02562 * 22 21 4 25 25 N 1.31624 * 119.99540 * 359.72375 * 24 22 21 26 26 Si 1.86800 * 120.00451 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47364 * 179.72253 * 26 24 22 28 28 H 1.48508 * 109.46883 * 299.72375 * 26 24 22 29 29 H 1.48497 * 109.46870 * 59.72186 * 26 24 22 30 30 H 1.09003 * 109.47348 * 299.99929 * 1 2 3 31 31 H 1.09004 * 109.47447 * 60.00101 * 1 2 3 32 32 H 1.08999 * 109.47360 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.46986 * 240.00225 * 2 1 3 34 34 H 1.08994 * 109.47070 * 179.97438 * 3 2 1 35 35 H 1.09003 * 109.47532 * 300.00174 * 3 2 1 36 36 H 1.09003 * 109.47082 * 59.99909 * 3 2 1 37 37 H 1.09008 * 109.46958 * 295.00113 * 6 4 2 38 38 H 1.08993 * 109.47007 * 54.99576 * 6 4 2 39 39 H 0.96999 * 119.99793 * 0.02562 * 7 6 4 40 40 H 1.07997 * 120.05579 * 0.07513 * 11 10 8 41 41 H 1.07998 * 119.79847 * 180.27651 * 12 11 10 42 42 H 1.07999 * 119.93438 * 179.91451 * 15 14 13 43 43 H 1.08999 * 109.47293 * 59.99955 * 17 16 14 44 44 H 1.09001 * 109.47569 * 180.02562 * 17 16 14 45 45 H 1.09003 * 109.47451 * 300.00443 * 17 16 14 46 46 H 1.08996 * 109.61325 * 169.93830 * 18 16 14 47 47 H 1.09004 * 109.61697 * 290.47506 * 18 16 14 48 48 H 1.09000 * 109.77161 * 56.28059 * 19 18 16 49 49 H 1.08993 * 109.77246 * 177.07201 * 19 18 16 50 50 H 0.97004 * 119.99747 * 265.00379 * 21 4 2 51 51 H 0.97000 * 120.00481 * 0.27542 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6766 -0.2074 2.1392 6 6 1.5301 -2.1638 1.2492 7 7 2.1142 -2.8883 2.3806 8 6 1.8053 -4.1845 2.5825 9 8 1.0422 -4.7527 1.8256 10 6 2.3943 -4.9146 3.7222 11 6 3.2765 -4.2656 4.5894 12 6 3.8204 -4.9498 5.6535 13 6 3.5061 -6.2882 5.8646 14 6 2.6297 -6.9439 5.0038 15 6 2.0760 -6.2569 3.9333 16 7 2.2818 -8.2867 5.1866 17 6 0.9235 -8.4091 5.7323 18 6 3.2520 -8.9995 6.0258 19 6 3.4897 -8.1811 7.3015 20 8 4.0735 -6.9312 6.9202 21 7 3.5050 -0.7207 1.2495 22 6 4.1892 0.3542 1.7510 23 1 3.6488 1.2015 2.1466 24 6 5.5773 0.3549 1.7508 25 7 6.2358 -0.6800 1.2736 26 14 6.5107 1.8210 2.4355 27 1 7.9708 1.5730 2.3266 28 1 6.1563 3.0384 1.6624 29 1 6.1470 2.0171 3.8618 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1299 1.4425 0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 0.4437 -2.1651 1.3387 38 1 1.8184 -2.6510 0.3178 39 1 2.7227 -2.4348 2.9848 40 1 3.5282 -3.2279 4.4281 41 1 4.4988 -4.4455 6.3257 42 1 1.3968 -6.7616 3.2622 43 1 0.2125 -7.9546 5.0424 44 1 0.6788 -9.4629 5.8650 45 1 0.8715 -7.9004 6.6949 46 1 2.8569 -9.9807 6.2889 47 1 4.1908 -9.1134 5.4838 48 1 2.5412 -8.0054 7.8090 49 1 4.1687 -8.7186 7.9633 50 1 3.9903 -1.4819 0.8944 51 1 5.7512 -1.4415 0.9184 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667469873.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:08 Heat of formation + Delta-G solvation = -49.831622 kcal Electronic energy + Delta-G solvation = -31034.255452 eV Core-core repulsion = 26933.247811 eV Total energy + Delta-G solvation = -4101.007641 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.32258 -40.94249 -39.01534 -38.15791 -37.60792 -35.49006 -35.17476 -32.40797 -31.80250 -31.67830 -29.99385 -29.22673 -27.47538 -26.63303 -25.70974 -25.34552 -24.13730 -23.18109 -22.42629 -21.14810 -20.52466 -19.48371 -19.26707 -18.62678 -18.01403 -17.26979 -16.91599 -16.66995 -16.41202 -16.18631 -15.93915 -15.64247 -15.55230 -15.45260 -15.15425 -15.01801 -14.84620 -14.69787 -14.41835 -14.28635 -13.69923 -13.54797 -13.27231 -13.13626 -13.11977 -12.90237 -12.81930 -12.67427 -12.63433 -12.47540 -12.16495 -11.99091 -11.95776 -11.90611 -11.56993 -11.49067 -11.16372 -11.11691 -10.78457 -10.56293 -10.15691 -9.54001 -9.10145 -9.03707 -8.23790 -5.19672 -0.28001 0.13600 1.63289 1.68836 1.71189 1.86790 2.09751 2.12437 2.56339 2.70495 2.76917 3.37574 3.50381 3.65645 3.73470 3.74887 3.80756 3.91374 3.94699 4.05562 4.11496 4.21979 4.23948 4.24267 4.34424 4.37689 4.43152 4.56956 4.59349 4.66460 4.71132 4.79555 4.86933 4.88212 4.91148 4.97531 4.99205 5.01685 5.10480 5.17166 5.20339 5.24640 5.33829 5.46099 5.57661 5.71289 5.75353 5.75606 5.86722 6.25302 6.47977 6.60495 7.10952 7.17033 8.06923 8.20118 9.26237 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011775 B = 0.002835 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.297463 B = 9872.510661 C =11824.708582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.106 4.106 3 C -0.133 4.133 4 C 0.178 3.822 5 H 0.056 0.944 6 C 0.121 3.879 7 N -0.707 5.707 8 C 0.558 3.442 9 O -0.582 6.582 10 C -0.165 4.165 11 C -0.059 4.059 12 C -0.142 4.142 13 C 0.111 3.889 14 C 0.015 3.985 15 C -0.030 4.030 16 N -0.503 5.503 17 C 0.022 3.978 18 C 0.014 3.986 19 C 0.014 3.986 20 O -0.317 6.317 21 N -0.739 5.739 22 C -0.303 4.303 23 H 0.071 0.929 24 C -0.102 4.102 25 N -0.979 5.979 26 Si 1.117 2.883 27 H -0.302 1.302 28 H -0.283 1.283 29 H -0.277 1.277 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.051 0.949 36 H 0.046 0.954 37 H 0.085 0.915 38 H 0.050 0.950 39 H 0.409 0.591 40 H 0.139 0.861 41 H 0.152 0.848 42 H 0.135 0.865 43 H 0.068 0.932 44 H 0.105 0.895 45 H 0.037 0.963 46 H 0.134 0.866 47 H 0.085 0.915 48 H 0.077 0.923 49 H 0.145 0.855 50 H 0.358 0.642 51 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.249 -13.903 12.881 22.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.128 4.128 3 C -0.190 4.190 4 C 0.069 3.931 5 H 0.074 0.926 6 C -0.004 4.004 7 N -0.358 5.358 8 C 0.347 3.653 9 O -0.464 6.464 10 C -0.169 4.169 11 C -0.078 4.078 12 C -0.161 4.161 13 C 0.062 3.938 14 C -0.081 4.081 15 C -0.051 4.051 16 N -0.220 5.220 17 C -0.123 4.123 18 C -0.113 4.113 19 C -0.062 4.062 20 O -0.231 6.231 21 N -0.381 5.381 22 C -0.435 4.435 23 H 0.089 0.911 24 C -0.293 4.293 25 N -0.627 5.627 26 Si 0.944 3.056 27 H -0.229 1.229 28 H -0.210 1.210 29 H -0.203 1.203 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.103 0.897 38 H 0.068 0.932 39 H 0.246 0.754 40 H 0.156 0.844 41 H 0.170 0.830 42 H 0.152 0.848 43 H 0.087 0.913 44 H 0.123 0.877 45 H 0.056 0.944 46 H 0.152 0.848 47 H 0.104 0.896 48 H 0.095 0.905 49 H 0.163 0.837 50 H 0.190 0.810 51 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -10.271 -13.671 12.424 21.136 hybrid contribution -0.855 -0.343 -0.015 0.921 sum -11.126 -14.014 12.409 21.775 Atomic orbital electron populations 1.21852 0.93776 1.01931 1.02272 1.21618 0.96069 0.96846 0.98235 1.21713 1.01612 0.95411 1.00274 1.20617 0.83513 0.92084 0.96860 0.92602 1.21687 0.98279 0.92066 0.88326 1.45904 1.48364 1.10784 1.30731 1.18401 0.80565 0.81765 0.84597 1.90703 1.38391 1.68600 1.48713 1.19642 1.03597 0.95385 0.98290 1.21203 0.93673 1.00233 0.92721 1.20576 1.03718 0.91480 1.00300 1.19348 0.95724 0.91719 0.87017 1.18625 1.02533 0.90343 0.96632 1.20828 0.97706 0.92028 0.94556 1.59200 1.05028 1.08191 1.49605 1.22682 0.86868 1.04301 0.98419 1.23135 0.97007 0.99243 0.91923 1.23951 1.01329 0.82796 0.98118 1.86283 1.55008 1.36556 1.45223 1.42595 1.01090 1.19923 1.74463 1.20191 0.91516 0.97409 1.34343 0.91098 1.26795 0.95014 1.05132 1.02377 1.70992 1.37620 1.07887 1.46238 0.82740 0.74443 0.72349 0.76089 1.22863 1.21007 1.20343 0.92168 0.91943 0.92295 0.93297 0.93328 0.93003 0.93482 0.89721 0.93168 0.75363 0.84375 0.83031 0.84754 0.91325 0.87687 0.94393 0.84770 0.89629 0.90460 0.83685 0.81030 0.94673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.62 8.84 71.98 0.64 -2.98 16 2 C -0.11 -3.52 2.69 -10.79 -0.03 -3.55 16 3 C -0.13 -4.65 8.26 71.98 0.59 -4.06 16 4 C 0.18 6.47 2.18 44.99 0.10 6.57 16 5 H 0.06 2.05 8.08 -2.39 -0.02 2.03 16 6 C 0.12 4.12 4.73 86.38 0.41 4.53 16 7 N -0.71 -24.42 5.34 -466.20 -2.49 -26.91 16 8 C 0.56 19.98 7.76 86.72 0.67 20.65 16 9 O -0.58 -23.75 16.33 -3.96 -0.06 -23.81 16 10 C -0.17 -5.19 5.87 -20.13 -0.12 -5.31 16 11 C -0.06 -1.69 9.53 22.50 0.21 -1.48 16 12 C -0.14 -3.71 9.92 22.35 0.22 -3.48 16 13 C 0.11 2.79 6.48 22.72 0.15 2.94 16 14 C 0.02 0.38 5.12 38.21 0.20 0.58 16 15 C -0.03 -0.89 9.00 22.71 0.20 -0.68 16 16 N -0.50 -9.67 4.86 -719.26 -3.49 -13.17 16 17 C 0.02 0.32 9.19 127.69 1.17 1.49 16 18 C 0.01 0.18 6.02 86.47 0.52 0.70 16 19 C 0.01 0.17 7.06 72.12 0.51 0.68 16 20 O -0.32 -6.88 10.39 -93.55 -0.97 -7.86 16 21 N -0.74 -33.53 4.44 -322.95 -1.43 -34.96 16 22 C -0.30 -15.30 7.57 84.03 0.64 -14.67 16 23 H 0.07 3.49 7.40 -2.91 -0.02 3.47 16 24 C -0.10 -5.54 5.50 84.86 0.47 -5.08 16 25 N -0.98 -58.87 13.70 21.65 0.30 -58.58 16 26 Si 1.12 50.08 29.92 68.60 2.05 52.13 16 27 H -0.30 -14.26 7.11 99.48 0.71 -13.56 16 28 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 29 H -0.28 -11.46 7.11 99.48 0.71 -10.76 16 30 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 32 H 0.06 1.44 6.55 -2.39 -0.02 1.43 16 33 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.05 2.08 6.01 -2.39 -0.01 2.06 16 35 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.05 1.56 8.14 -2.39 -0.02 1.55 16 37 H 0.08 2.64 6.71 -2.38 -0.02 2.62 16 38 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.41 14.15 6.16 -92.71 -0.57 13.58 16 40 H 0.14 3.91 6.40 -2.91 -0.02 3.89 16 41 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 42 H 0.13 4.04 7.63 -2.91 -0.02 4.01 16 43 H 0.07 1.12 7.85 -2.39 -0.02 1.10 16 44 H 0.10 0.89 7.98 -2.39 -0.02 0.87 16 45 H 0.04 0.50 6.90 -2.39 -0.02 0.48 16 46 H 0.13 0.83 7.90 -2.39 -0.02 0.81 16 47 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 48 H 0.08 0.85 6.80 -2.39 -0.02 0.83 16 49 H 0.15 0.94 8.14 -2.39 -0.02 0.92 16 50 H 0.36 17.79 6.63 -92.71 -0.61 17.17 16 51 H 0.24 14.69 6.77 -92.71 -0.63 14.06 16 Total: -1.00 -68.63 400.98 0.36 -68.26 By element: Atomic # 1 Polarization: 48.12 SS G_CDS: -0.09 Total: 48.03 kcal Atomic # 6 Polarization: -9.70 SS G_CDS: 6.55 Total: -3.14 kcal Atomic # 7 Polarization: -126.50 SS G_CDS: -7.12 Total: -133.62 kcal Atomic # 8 Polarization: -30.63 SS G_CDS: -1.04 Total: -31.67 kcal Atomic # 14 Polarization: 50.08 SS G_CDS: 2.05 Total: 52.13 kcal Total: -68.63 0.36 -68.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667469873.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.433 kcal (2) G-P(sol) polarization free energy of solvation -68.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds