Wall clock time and date at job start Wed Apr 1 2020 04:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47306 * 322.87033 * 3 2 1 5 5 C 1.52992 * 109.47482 * 179.97438 * 4 3 2 6 6 C 1.50698 * 109.47592 * 179.97438 * 5 4 3 7 7 O 1.21286 * 119.99758 * 0.02562 * 6 5 4 8 8 N 1.34779 * 120.00201 * 179.97438 * 6 5 4 9 9 C 1.44789 * 120.17871 * 0.02562 * 8 6 5 10 10 C 1.51504 * 112.24842 * 264.62500 * 9 8 6 11 11 C 1.51305 * 113.26595 * 285.29509 * 10 9 8 12 12 H 1.09004 * 111.34169 * 186.19791 * 11 10 9 13 13 C 1.54724 * 106.46306 * 307.78996 * 11 10 9 14 14 C 1.54203 * 104.46669 * 89.01929 * 13 11 10 15 15 C 1.50877 * 105.38213 * 11.60616 * 14 13 11 16 16 H 1.08994 * 106.56025 * 122.57485 * 15 14 13 17 17 C 1.49815 * 120.17624 * 179.72196 * 8 6 5 18 18 N 1.48479 * 109.83530 * 7.88747 * 15 14 13 19 19 C 1.46893 * 111.00047 * 94.71454 * 18 15 14 20 20 C 1.50703 * 109.47079 * 54.58162 * 19 18 15 21 21 O 1.21290 * 120.00261 * 359.97438 * 20 19 18 22 22 N 1.34779 * 120.00060 * 180.02562 * 20 19 18 23 23 C 1.37101 * 120.00175 * 179.97438 * 22 20 19 24 24 H 1.07999 * 119.99660 * 359.97438 * 23 22 20 25 25 C 1.38953 * 119.99803 * 179.97438 * 23 22 20 26 26 N 1.31406 * 119.99380 * 180.02562 * 25 23 22 27 27 Si 1.86794 * 120.00124 * 0.02562 * 25 23 22 28 28 H 1.48501 * 109.47331 * 89.99850 * 27 25 23 29 29 H 1.48503 * 109.46899 * 209.99993 * 27 25 23 30 30 H 1.48502 * 109.47468 * 329.99540 * 27 25 23 31 31 H 4.44650 * 5.63319 * 179.97438 * 4 1 2 32 32 H 1.09002 * 109.47132 * 82.87190 * 3 2 1 33 33 H 1.09001 * 109.47213 * 202.87220 * 3 2 1 34 34 H 1.09002 * 109.47153 * 300.00144 * 4 3 2 35 35 H 1.08998 * 109.47533 * 59.99773 * 4 3 2 36 36 H 1.09002 * 109.47103 * 300.00247 * 5 4 3 37 37 H 1.09001 * 109.47066 * 60.00169 * 5 4 3 38 38 H 1.08996 * 108.92577 * 25.33619 * 9 8 6 39 39 H 1.08995 * 108.92551 * 144.00152 * 9 8 6 40 40 H 1.08996 * 108.72220 * 46.27016 * 10 9 8 41 41 H 1.08998 * 108.72227 * 164.31593 * 10 9 8 42 42 H 1.09000 * 110.43567 * 207.76888 * 13 11 10 43 43 H 1.09000 * 110.42759 * 330.15005 * 13 11 10 44 44 H 1.09002 * 110.26360 * 130.58139 * 14 13 11 45 45 H 1.09004 * 110.26552 * 252.63154 * 14 13 11 46 46 H 1.08993 * 109.54402 * 270.57969 * 17 8 6 47 47 H 1.08999 * 109.54124 * 30.83520 * 17 8 6 48 48 H 1.08997 * 109.47278 * 174.57623 * 19 18 15 49 49 H 1.08996 * 109.47382 * 294.57806 * 19 18 15 50 50 H 0.97006 * 119.99630 * 359.97438 * 22 20 19 51 51 H 0.97006 * 119.99960 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1565 -1.1491 0.8707 5 6 4.6864 -1.1489 0.8702 6 6 5.1893 -2.2810 1.7283 7 8 4.4015 -3.0161 2.2851 8 7 6.5145 -2.4773 1.8762 9 6 7.4584 -1.6025 1.2129 10 6 7.9313 -2.1672 -0.1111 11 6 8.9187 -3.3034 0.0423 12 1 9.3201 -3.6131 -0.9227 13 6 10.0368 -2.7890 0.9799 14 6 9.5424 -3.1400 2.3978 15 6 8.3668 -4.0636 2.1944 16 1 8.6002 -4.9854 2.7271 17 6 7.0188 -3.5978 2.7334 18 7 8.2557 -4.4293 0.7597 19 6 8.9372 -5.7016 0.4865 20 6 8.4016 -6.7665 1.4087 21 8 7.5376 -6.4923 2.2146 22 7 8.8835 -8.0232 1.3386 23 6 8.3967 -8.9919 2.1780 24 1 7.6273 -8.7477 2.8955 25 6 8.8931 -10.2876 2.1053 26 7 8.4261 -11.2161 2.9095 27 14 10.2242 -10.7097 0.8647 28 1 11.5593 -10.4981 1.4797 29 1 10.0872 -12.1307 0.4558 30 1 10.0845 -9.8359 -0.3279 31 1 -1.0499 -0.0001 0.0003 32 1 3.0094 -0.1267 -1.0197 33 1 3.0089 0.9477 0.3994 34 1 2.7931 -1.0218 1.8904 35 1 2.7936 -2.0962 0.4714 36 1 5.0495 -1.2765 -0.1496 37 1 5.0497 -0.2019 1.2694 38 1 6.9825 -0.6380 1.0360 39 1 8.3217 -1.4566 1.8621 40 1 7.0658 -2.5284 -0.6665 41 1 8.4030 -1.3686 -0.6836 42 1 10.9764 -3.2990 0.7673 43 1 10.1572 -1.7110 0.8728 44 1 10.3287 -3.6473 2.9569 45 1 9.2274 -2.2377 2.9219 46 1 7.1332 -3.2488 3.7596 47 1 6.3102 -4.4256 2.7054 48 1 8.7592 -5.9942 -0.5483 49 1 10.0080 -5.5831 0.6515 50 1 9.5748 -8.2424 0.6943 51 1 8.7729 -12.1206 2.8591 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671576863.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:55 Heat of formation + Delta-G solvation = 6.709126 kcal Electronic energy + Delta-G solvation = -31648.681426 eV Core-core repulsion = 27550.125576 eV Total energy + Delta-G solvation = -4098.555850 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.01976 -39.20153 -38.05047 -35.75750 -35.08025 -34.09083 -32.92868 -32.32071 -31.88058 -31.49449 -28.81779 -27.59105 -27.31509 -25.73607 -23.91703 -23.21092 -22.02958 -20.57779 -19.75642 -19.31627 -18.85850 -18.30689 -18.09159 -16.97083 -16.38575 -16.20595 -15.90798 -15.40602 -15.12875 -14.87902 -14.77816 -14.43822 -14.26286 -13.94865 -13.74636 -13.40376 -13.24826 -12.99491 -12.89716 -12.62412 -12.43772 -12.24048 -12.19510 -12.05751 -11.91698 -11.84970 -11.64838 -11.32360 -11.15049 -11.14566 -10.97808 -10.81491 -10.63915 -10.59085 -10.39533 -10.27904 -10.21230 -9.99317 -9.58183 -9.38659 -8.42996 -8.41663 -8.25654 -8.16846 -6.33089 -3.84540 2.61314 2.66075 2.86489 3.00457 3.04066 3.13092 3.18936 3.68232 3.91628 4.07973 4.16815 4.45533 4.56281 4.64089 4.69550 4.81218 4.82888 4.89792 4.93560 5.06350 5.19222 5.22470 5.24297 5.33012 5.36710 5.39802 5.42576 5.42829 5.57031 5.58005 5.66657 5.75480 5.78370 5.83172 5.86659 5.89481 5.92893 5.96102 5.98057 6.05504 6.16612 6.19743 6.32934 6.59410 6.71390 7.13460 7.17709 7.44195 7.55526 7.68260 8.12231 8.43772 8.56588 8.92541 9.39628 9.78501 10.79833 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013000 B = 0.002628 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.304063 B =10652.970555 C =11915.448284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.184 4.184 3 C -0.013 4.013 4 C -0.100 4.100 5 C -0.138 4.138 6 C 0.510 3.490 7 O -0.539 6.539 8 N -0.600 5.600 9 C 0.102 3.898 10 C -0.125 4.125 11 C 0.062 3.938 12 H 0.087 0.913 13 C -0.150 4.150 14 C -0.138 4.138 15 C 0.035 3.965 16 H 0.105 0.895 17 C 0.154 3.846 18 N -0.469 5.469 19 C 0.031 3.969 20 C 0.448 3.552 21 O -0.557 6.557 22 N -0.587 5.587 23 C -0.304 4.304 24 H 0.121 0.879 25 C 0.042 3.958 26 N -0.879 5.879 27 Si 0.879 3.121 28 H -0.271 1.271 29 H -0.276 1.276 30 H -0.270 1.270 31 H 0.216 0.784 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.074 0.926 44 H 0.068 0.932 45 H 0.073 0.927 46 H 0.059 0.941 47 H 0.106 0.894 48 H 0.091 0.909 49 H 0.049 0.951 50 H 0.370 0.630 51 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.414 25.042 -8.655 26.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.184 4.184 3 C -0.050 4.050 4 C -0.138 4.138 5 C -0.178 4.178 6 C 0.298 3.702 7 O -0.416 6.416 8 N -0.333 5.333 9 C -0.022 4.022 10 C -0.164 4.164 11 C -0.047 4.047 12 H 0.105 0.895 13 C -0.189 4.189 14 C -0.177 4.177 15 C -0.074 4.074 16 H 0.123 0.877 17 C 0.033 3.967 18 N -0.191 5.191 19 C -0.101 4.101 20 C 0.234 3.766 21 O -0.439 6.439 22 N -0.226 5.226 23 C -0.433 4.433 24 H 0.138 0.862 25 C -0.162 4.162 26 N -0.519 5.519 27 Si 0.706 3.294 28 H -0.197 1.197 29 H -0.201 1.201 30 H -0.195 1.195 31 H 0.232 0.768 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.111 0.889 37 H 0.108 0.892 38 H 0.090 0.910 39 H 0.101 0.899 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.082 0.918 43 H 0.093 0.907 44 H 0.087 0.913 45 H 0.092 0.908 46 H 0.077 0.923 47 H 0.124 0.876 48 H 0.109 0.891 49 H 0.067 0.933 50 H 0.203 0.797 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.147 24.472 -7.891 25.713 hybrid contribution 1.970 -0.588 -0.909 2.248 sum 1.823 23.885 -8.800 25.519 Atomic orbital electron populations 1.24903 0.96012 1.01033 1.01185 1.23131 0.94616 1.00331 1.00289 1.18775 0.84828 0.99920 1.01436 1.21289 0.93274 0.98429 1.00846 1.21698 0.97034 0.98112 1.00945 1.20548 0.82109 0.85875 0.81717 1.90726 1.54881 1.47448 1.48563 1.48332 1.04979 1.31497 1.48539 1.21082 0.94204 0.92454 0.94481 1.21384 0.99968 0.97224 0.97862 1.22663 0.92639 0.91821 0.97605 0.89457 1.23035 0.99116 1.01492 0.95229 1.22222 0.98143 1.00105 0.97212 1.22228 0.93476 1.00765 0.90904 0.87706 1.21921 0.95003 0.88942 0.90826 1.65142 1.48786 0.99599 1.05596 1.22078 0.96529 0.90906 1.00547 1.19619 0.86336 0.83266 0.87411 1.90542 1.32982 1.80370 1.40047 1.42229 1.36717 1.08925 1.34773 1.19435 1.21228 0.87775 1.14866 0.86175 1.25048 0.98068 0.95525 0.97510 1.69622 1.42261 1.02735 1.37268 0.86679 0.82369 0.79063 0.81314 1.19682 1.20142 1.19508 0.76752 0.89531 0.89634 0.90809 0.90620 0.88931 0.89179 0.90988 0.89911 0.91181 0.91029 0.91816 0.90735 0.91283 0.90816 0.92315 0.87622 0.89098 0.93284 0.79738 0.91584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.03 19.25 29.55 0.57 -1.46 16 2 C -0.18 -1.88 13.34 -37.13 -0.50 -2.37 16 3 C -0.01 -0.10 5.70 -29.52 -0.17 -0.27 16 4 C -0.10 -1.03 4.46 -26.74 -0.12 -1.15 16 5 C -0.14 -1.28 4.18 -27.89 -0.12 -1.40 16 6 C 0.51 7.35 7.69 -10.99 -0.08 7.27 16 7 O -0.54 -10.46 15.64 5.55 0.09 -10.37 16 8 N -0.60 -7.97 2.86 -173.51 -0.50 -8.46 16 9 C 0.10 0.93 4.98 -5.71 -0.03 0.90 16 10 C -0.13 -1.12 5.01 -28.34 -0.14 -1.26 16 11 C 0.06 0.66 3.37 -66.46 -0.22 0.43 16 12 H 0.09 0.85 7.99 -51.93 -0.41 0.43 16 13 C -0.15 -1.37 5.73 -25.19 -0.14 -1.52 16 14 C -0.14 -1.54 5.78 -27.17 -0.16 -1.70 16 15 C 0.04 0.53 1.42 -68.18 -0.10 0.43 16 16 H 0.11 1.99 4.97 -51.93 -0.26 1.73 16 17 C 0.15 2.50 5.92 -2.47 -0.01 2.48 16 18 N -0.47 -7.08 4.66 -218.66 -1.02 -8.10 16 19 C 0.03 0.51 5.47 -4.98 -0.03 0.48 16 20 C 0.45 9.86 7.08 -10.98 -0.08 9.78 16 21 O -0.56 -14.24 12.55 5.55 0.07 -14.17 16 22 N -0.59 -13.75 5.09 -10.96 -0.06 -13.80 16 23 C -0.30 -8.52 10.16 -14.93 -0.15 -8.67 16 24 H 0.12 3.86 7.39 -52.49 -0.39 3.47 16 25 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 26 N -0.88 -25.67 13.96 55.50 0.77 -24.89 16 27 Si 0.88 19.25 27.74 -169.99 -4.71 14.54 16 28 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 29 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 30 H -0.27 -5.39 6.52 56.52 0.37 -5.02 16 31 H 0.22 1.31 7.80 -54.10 -0.42 0.89 16 32 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 35 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 36 H 0.09 0.71 8.11 -51.93 -0.42 0.29 16 37 H 0.09 0.60 7.40 -51.93 -0.38 0.21 16 38 H 0.07 0.47 6.21 -51.93 -0.32 0.15 16 39 H 0.08 0.71 3.91 -51.93 -0.20 0.51 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.07 0.53 7.39 -51.93 -0.38 0.15 16 44 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.07 0.72 6.14 -51.93 -0.32 0.40 16 46 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 47 H 0.11 2.24 6.66 -51.93 -0.35 1.90 16 48 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 49 H 0.05 0.70 7.89 -51.93 -0.41 0.29 16 50 H 0.37 7.63 5.76 -40.82 -0.24 7.40 16 51 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 395.50 15.07 5.96 5.96 Total: -1.00 -35.23 395.50 -8.87 -44.10 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: -7.90 Total: 12.19 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: -1.57 Total: 3.02 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: -0.80 Total: -55.26 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: 0.16 Total: -24.54 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -4.71 Total: 14.54 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.23 -8.87 -44.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671576863.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.807 kcal (2) G-P(sol) polarization free energy of solvation -35.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds