Wall clock time and date at job start Wed Apr 1 2020 04:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47306 * 322.87033 * 3 2 1 5 5 C 1.52992 * 109.47482 * 179.97438 * 4 3 2 6 6 C 1.50698 * 109.47592 * 179.97438 * 5 4 3 7 7 O 1.21286 * 119.99758 * 0.02562 * 6 5 4 8 8 N 1.34779 * 120.00201 * 179.97438 * 6 5 4 9 9 C 1.44789 * 120.17871 * 0.02562 * 8 6 5 10 10 C 1.51504 * 112.24842 * 264.62500 * 9 8 6 11 11 C 1.51305 * 113.26595 * 285.29509 * 10 9 8 12 12 H 1.09004 * 111.34169 * 186.19791 * 11 10 9 13 13 C 1.54724 * 106.46306 * 307.78996 * 11 10 9 14 14 C 1.54203 * 104.46669 * 89.01929 * 13 11 10 15 15 C 1.50877 * 105.38213 * 11.60616 * 14 13 11 16 16 H 1.08994 * 106.56025 * 122.57485 * 15 14 13 17 17 C 1.49815 * 120.17624 * 179.72196 * 8 6 5 18 18 N 1.48479 * 109.83530 * 7.88747 * 15 14 13 19 19 C 1.46893 * 111.00047 * 94.71454 * 18 15 14 20 20 C 1.50703 * 109.47079 * 54.58162 * 19 18 15 21 21 O 1.21290 * 120.00261 * 359.97438 * 20 19 18 22 22 N 1.34779 * 120.00060 * 180.02562 * 20 19 18 23 23 C 1.37101 * 120.00175 * 179.97438 * 22 20 19 24 24 H 1.07999 * 119.99660 * 359.97438 * 23 22 20 25 25 C 1.38953 * 119.99803 * 179.97438 * 23 22 20 26 26 N 1.31406 * 119.99380 * 180.02562 * 25 23 22 27 27 Si 1.86794 * 120.00124 * 0.02562 * 25 23 22 28 28 H 1.48501 * 109.47331 * 89.99850 * 27 25 23 29 29 H 1.48503 * 109.46899 * 209.99993 * 27 25 23 30 30 H 1.48502 * 109.47468 * 329.99540 * 27 25 23 31 31 H 4.44650 * 5.63319 * 179.97438 * 4 1 2 32 32 H 1.09002 * 109.47132 * 82.87190 * 3 2 1 33 33 H 1.09001 * 109.47213 * 202.87220 * 3 2 1 34 34 H 1.09002 * 109.47153 * 300.00144 * 4 3 2 35 35 H 1.08998 * 109.47533 * 59.99773 * 4 3 2 36 36 H 1.09002 * 109.47103 * 300.00247 * 5 4 3 37 37 H 1.09001 * 109.47066 * 60.00169 * 5 4 3 38 38 H 1.08996 * 108.92577 * 25.33619 * 9 8 6 39 39 H 1.08995 * 108.92551 * 144.00152 * 9 8 6 40 40 H 1.08996 * 108.72220 * 46.27016 * 10 9 8 41 41 H 1.08998 * 108.72227 * 164.31593 * 10 9 8 42 42 H 1.09000 * 110.43567 * 207.76888 * 13 11 10 43 43 H 1.09000 * 110.42759 * 330.15005 * 13 11 10 44 44 H 1.09002 * 110.26360 * 130.58139 * 14 13 11 45 45 H 1.09004 * 110.26552 * 252.63154 * 14 13 11 46 46 H 1.08993 * 109.54402 * 270.57969 * 17 8 6 47 47 H 1.08999 * 109.54124 * 30.83520 * 17 8 6 48 48 H 1.08997 * 109.47278 * 174.57623 * 19 18 15 49 49 H 1.08996 * 109.47382 * 294.57806 * 19 18 15 50 50 H 0.97006 * 119.99630 * 359.97438 * 22 20 19 51 51 H 0.97006 * 119.99960 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1565 -1.1491 0.8707 5 6 4.6864 -1.1489 0.8702 6 6 5.1893 -2.2810 1.7283 7 8 4.4015 -3.0161 2.2851 8 7 6.5145 -2.4773 1.8762 9 6 7.4584 -1.6025 1.2129 10 6 7.9313 -2.1672 -0.1111 11 6 8.9187 -3.3034 0.0423 12 1 9.3201 -3.6131 -0.9227 13 6 10.0368 -2.7890 0.9799 14 6 9.5424 -3.1400 2.3978 15 6 8.3668 -4.0636 2.1944 16 1 8.6002 -4.9854 2.7271 17 6 7.0188 -3.5978 2.7334 18 7 8.2557 -4.4293 0.7597 19 6 8.9372 -5.7016 0.4865 20 6 8.4016 -6.7665 1.4087 21 8 7.5376 -6.4923 2.2146 22 7 8.8835 -8.0232 1.3386 23 6 8.3967 -8.9919 2.1780 24 1 7.6273 -8.7477 2.8955 25 6 8.8931 -10.2876 2.1053 26 7 8.4261 -11.2161 2.9095 27 14 10.2242 -10.7097 0.8647 28 1 11.5593 -10.4981 1.4797 29 1 10.0872 -12.1307 0.4558 30 1 10.0845 -9.8359 -0.3279 31 1 -1.0499 -0.0001 0.0003 32 1 3.0094 -0.1267 -1.0197 33 1 3.0089 0.9477 0.3994 34 1 2.7931 -1.0218 1.8904 35 1 2.7936 -2.0962 0.4714 36 1 5.0495 -1.2765 -0.1496 37 1 5.0497 -0.2019 1.2694 38 1 6.9825 -0.6380 1.0360 39 1 8.3217 -1.4566 1.8621 40 1 7.0658 -2.5284 -0.6665 41 1 8.4030 -1.3686 -0.6836 42 1 10.9764 -3.2990 0.7673 43 1 10.1572 -1.7110 0.8728 44 1 10.3287 -3.6473 2.9569 45 1 9.2274 -2.2377 2.9219 46 1 7.1332 -3.2488 3.7596 47 1 6.3102 -4.4256 2.7054 48 1 8.7592 -5.9942 -0.5483 49 1 10.0080 -5.5831 0.6515 50 1 9.5748 -8.2424 0.6943 51 1 8.7729 -12.1206 2.8591 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671576863.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:54 Heat of formation + Delta-G solvation = -20.383146 kcal Electronic energy + Delta-G solvation = -31649.856236 eV Core-core repulsion = 27550.125576 eV Total energy + Delta-G solvation = -4099.730660 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.07837 -40.51298 -39.61055 -36.52147 -36.33078 -35.92197 -33.95527 -33.78311 -33.20233 -32.69147 -29.73331 -28.68953 -28.31496 -27.06871 -25.55361 -24.12904 -22.83554 -21.61827 -21.33048 -20.72167 -20.07189 -19.72069 -18.90511 -18.04701 -17.70186 -17.31537 -16.89877 -16.80021 -16.46926 -16.23940 -15.86071 -15.67833 -15.38328 -15.15776 -14.83579 -14.77342 -14.40199 -14.31500 -14.04427 -13.78576 -13.64790 -13.50644 -13.34200 -13.20118 -13.02459 -12.80291 -12.64762 -12.51144 -12.44048 -12.19544 -12.02904 -11.98978 -11.91732 -11.80002 -11.60134 -11.41762 -11.16286 -11.07979 -10.95221 -10.55768 -10.31451 -10.12459 -9.52040 -9.36403 -8.43916 -6.04849 1.26832 1.32457 1.41784 1.76551 1.85766 1.92446 1.93793 2.17479 2.20301 2.67937 3.11225 3.13055 3.53368 3.63511 3.73500 3.78821 3.97458 4.06118 4.12552 4.14583 4.17581 4.27999 4.36195 4.39124 4.50366 4.52265 4.58913 4.61749 4.65447 4.70619 4.75062 4.81567 4.84603 4.92331 4.95322 5.06884 5.09723 5.18009 5.22049 5.22669 5.29230 5.34920 5.35772 5.50177 5.54356 5.67183 5.89479 6.01742 6.17369 6.56801 6.67067 6.73526 6.85848 7.36036 7.36505 7.94269 8.74038 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013000 B = 0.002628 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.304063 B =10652.970555 C =11915.448284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.216 4.216 3 C -0.006 4.006 4 C -0.096 4.096 5 C -0.122 4.122 6 C 0.495 3.505 7 O -0.608 6.608 8 N -0.594 5.594 9 C 0.089 3.911 10 C -0.123 4.123 11 C 0.055 3.945 12 H 0.107 0.893 13 C -0.137 4.137 14 C -0.134 4.134 15 C 0.049 3.951 16 H 0.052 0.948 17 C 0.157 3.843 18 N -0.498 5.498 19 C 0.046 3.954 20 C 0.445 3.555 21 O -0.601 6.601 22 N -0.591 5.591 23 C -0.326 4.326 24 H 0.051 0.949 25 C -0.018 4.018 26 N -0.936 5.936 27 Si 0.968 3.032 28 H -0.255 1.255 29 H -0.275 1.275 30 H -0.232 1.232 31 H 0.238 0.762 32 H 0.108 0.892 33 H 0.113 0.887 34 H 0.049 0.951 35 H 0.040 0.960 36 H 0.121 0.879 37 H 0.132 0.868 38 H 0.112 0.888 39 H 0.095 0.905 40 H 0.053 0.947 41 H 0.120 0.880 42 H 0.070 0.930 43 H 0.111 0.889 44 H 0.063 0.937 45 H 0.091 0.909 46 H 0.058 0.942 47 H 0.038 0.962 48 H 0.115 0.885 49 H 0.080 0.920 50 H 0.389 0.611 51 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.199 29.355 -12.979 32.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.216 4.216 3 C -0.042 4.042 4 C -0.135 4.135 5 C -0.161 4.161 6 C 0.285 3.715 7 O -0.491 6.491 8 N -0.326 5.326 9 C -0.033 4.033 10 C -0.162 4.162 11 C -0.052 4.052 12 H 0.125 0.875 13 C -0.175 4.175 14 C -0.172 4.172 15 C -0.060 4.060 16 H 0.070 0.930 17 C 0.034 3.966 18 N -0.222 5.222 19 C -0.085 4.085 20 C 0.233 3.767 21 O -0.485 6.485 22 N -0.233 5.233 23 C -0.455 4.455 24 H 0.069 0.931 25 C -0.216 4.216 26 N -0.577 5.577 27 Si 0.787 3.213 28 H -0.179 1.179 29 H -0.201 1.201 30 H -0.155 1.155 31 H 0.255 0.745 32 H 0.126 0.874 33 H 0.131 0.869 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.139 0.861 37 H 0.150 0.850 38 H 0.130 0.870 39 H 0.112 0.888 40 H 0.072 0.928 41 H 0.138 0.862 42 H 0.089 0.911 43 H 0.129 0.871 44 H 0.081 0.919 45 H 0.110 0.890 46 H 0.076 0.924 47 H 0.057 0.943 48 H 0.133 0.867 49 H 0.098 0.902 50 H 0.224 0.776 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.677 28.852 -12.253 31.561 hybrid contribution 0.619 -1.884 0.577 2.065 sum 4.296 26.968 -11.676 29.700 Atomic orbital electron populations 1.25704 0.97148 1.00540 1.00760 1.23909 0.95972 1.00877 1.00812 1.18843 0.83562 0.99748 1.02079 1.21183 0.94376 0.98022 0.99872 1.21717 0.95786 0.97277 1.01301 1.21663 0.81937 0.86490 0.81430 1.90700 1.56679 1.50207 1.51466 1.48409 1.05650 1.30642 1.47892 1.21540 0.94053 0.93021 0.94655 1.21440 0.99287 0.97812 0.97627 1.22923 0.93581 0.90560 0.98154 0.87453 1.23010 0.98438 1.03807 0.92295 1.22173 0.95908 0.99678 0.99465 1.22040 0.93849 0.99424 0.90679 0.92982 1.21497 0.94545 0.88466 0.92062 1.65143 1.50462 1.00698 1.05849 1.21990 0.97762 0.89297 0.99484 1.20960 0.84864 0.83877 0.86979 1.90562 1.34803 1.81255 1.41894 1.42043 1.37650 1.08631 1.34940 1.18956 1.21071 0.89941 1.15560 0.93083 1.26165 1.01045 0.94382 1.00040 1.69818 1.44527 1.03499 1.39810 0.85327 0.78024 0.79109 0.78792 1.17897 1.20056 1.15505 0.74539 0.87420 0.86869 0.93183 0.94065 0.86053 0.84968 0.86972 0.88756 0.92817 0.86229 0.91080 0.87085 0.91857 0.89029 0.92372 0.94317 0.86662 0.90179 0.77561 0.91159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -4.14 19.25 74.32 1.43 -2.71 16 2 C -0.22 -4.25 13.34 31.12 0.42 -3.83 16 3 C -0.01 -0.08 5.70 28.79 0.16 0.08 16 4 C -0.10 -1.96 4.46 30.59 0.14 -1.82 16 5 C -0.12 -1.96 4.18 29.84 0.12 -1.83 16 6 C 0.49 14.57 7.69 87.66 0.67 15.24 16 7 O -0.61 -26.01 15.64 -3.05 -0.05 -26.06 16 8 N -0.59 -15.53 2.86 -821.23 -2.35 -17.88 16 9 C 0.09 1.22 4.98 86.21 0.43 1.65 16 10 C -0.12 -1.51 5.01 29.55 0.15 -1.36 16 11 C 0.06 0.92 3.37 44.53 0.15 1.07 16 12 H 0.11 1.42 7.99 -2.38 -0.02 1.40 16 13 C -0.14 -1.76 5.73 31.59 0.18 -1.58 16 14 C -0.13 -2.66 5.78 30.31 0.18 -2.49 16 15 C 0.05 1.53 1.42 43.74 0.06 1.59 16 16 H 0.05 2.15 4.97 -2.39 -0.01 2.14 16 17 C 0.16 5.54 5.92 85.56 0.51 6.05 16 18 N -0.50 -14.48 4.66 -845.70 -3.94 -18.42 16 19 C 0.05 1.42 5.47 85.56 0.47 1.89 16 20 C 0.45 20.51 7.08 87.66 0.62 21.13 16 21 O -0.60 -33.90 12.55 -3.06 -0.04 -33.94 16 22 N -0.59 -28.46 5.09 -306.98 -1.56 -30.02 16 23 C -0.33 -19.59 10.16 84.04 0.85 -18.73 16 24 H 0.05 3.68 7.39 -2.91 -0.02 3.66 16 25 C -0.02 -1.02 5.50 84.93 0.47 -0.55 16 26 N -0.94 -57.83 13.96 21.66 0.30 -57.52 16 27 Si 0.97 39.45 27.74 68.60 1.90 41.35 16 28 H -0.25 -9.72 7.11 99.48 0.71 -9.01 16 29 H -0.28 -11.18 7.11 99.48 0.71 -10.47 16 30 H -0.23 -7.96 6.52 99.48 0.65 -7.31 16 31 H 0.24 2.71 7.80 -4.42 -0.03 2.68 16 32 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.05 1.23 8.10 -2.39 -0.02 1.21 16 35 H 0.04 1.10 8.10 -2.39 -0.02 1.08 16 36 H 0.12 1.33 8.11 -2.39 -0.02 1.31 16 37 H 0.13 1.07 7.40 -2.39 -0.02 1.05 16 38 H 0.11 0.71 6.21 -2.39 -0.01 0.70 16 39 H 0.09 1.12 3.91 -2.39 -0.01 1.11 16 40 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 42 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.11 0.71 7.39 -2.39 -0.02 0.70 16 44 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.09 1.50 6.14 -2.38 -0.01 1.48 16 46 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 47 H 0.04 1.88 6.66 -2.39 -0.02 1.86 16 48 H 0.12 3.04 8.14 -2.39 -0.02 3.02 16 49 H 0.08 2.00 7.89 -2.39 -0.02 1.98 16 50 H 0.39 15.47 5.76 -92.70 -0.53 14.93 16 51 H 0.28 15.72 8.31 -92.70 -0.77 14.95 16 Total: -1.00 -94.49 395.50 1.62 -92.87 By element: Atomic # 1 Polarization: 35.48 SS G_CDS: 0.35 Total: 35.83 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: 7.01 Total: 13.80 kcal Atomic # 7 Polarization: -116.30 SS G_CDS: -7.55 Total: -123.85 kcal Atomic # 8 Polarization: -59.91 SS G_CDS: -0.09 Total: -60.00 kcal Atomic # 14 Polarization: 39.45 SS G_CDS: 1.90 Total: 41.35 kcal Total: -94.49 1.62 -92.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671576863.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.483 kcal (2) G-P(sol) polarization free energy of solvation -94.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds