Wall clock time and date at job start Wed Apr 1 2020 05:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47073 * 2 1 4 4 C 1.52999 * 109.47073 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47087 * 304.99712 * 4 3 2 6 6 C 1.50702 * 109.47221 * 184.99699 * 4 3 2 7 7 O 1.21286 * 119.99870 * 239.99931 * 6 4 3 8 8 N 1.34775 * 119.99859 * 60.00093 * 6 4 3 9 9 C 1.46501 * 119.99936 * 183.44425 * 8 6 4 10 10 C 1.52998 * 113.27923 * 306.25298 * 9 8 6 11 11 C 1.52998 * 109.47189 * 292.16368 * 10 9 8 12 12 O 1.42900 * 109.47289 * 184.80649 * 11 10 9 13 13 C 1.53499 * 114.20362 * 173.18916 * 9 8 6 14 14 N 1.47070 * 87.98163 * 220.14641 * 13 9 8 15 15 C 1.36943 * 136.05568 * 207.08780 * 14 13 9 16 16 H 1.07999 * 119.99536 * 354.41646 * 15 14 13 17 17 C 1.38813 * 119.99881 * 174.41814 * 15 14 13 18 18 N 1.31620 * 119.99691 * 182.14541 * 17 15 14 19 19 Si 1.86801 * 119.99931 * 2.41559 * 17 15 14 20 20 H 1.48498 * 109.47105 * 173.50337 * 19 17 15 21 21 H 1.48503 * 109.47282 * 293.50523 * 19 17 15 22 22 H 1.48505 * 109.46923 * 53.50688 * 19 17 15 23 23 C 1.47066 * 87.88832 * 27.34020 * 14 13 9 24 24 C 1.50701 * 109.47300 * 64.99736 * 4 3 2 25 25 C 1.38228 * 119.61995 * 84.72886 * 24 4 3 26 26 C 1.38630 * 119.16186 * 179.75896 * 25 24 4 27 27 C 1.38672 * 118.41823 * 0.50065 * 26 25 24 28 28 C 1.38182 * 119.16622 * 359.73763 * 27 26 25 29 29 N 1.31859 * 119.61871 * 264.99869 * 24 4 3 30 30 H 1.08998 * 109.47541 * 300.00109 * 1 2 3 31 31 H 1.08998 * 109.47159 * 60.00638 * 1 2 3 32 32 H 1.08999 * 109.47143 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47023 * 239.99327 * 2 1 3 34 34 H 1.09001 * 109.47116 * 119.99877 * 2 1 3 35 35 H 1.08993 * 109.47344 * 59.99913 * 3 2 1 36 36 H 1.09001 * 109.47049 * 299.99918 * 3 2 1 37 37 H 0.97002 * 120.00146 * 3.43852 * 8 6 4 38 38 H 1.09000 * 109.47171 * 52.16700 * 10 9 8 39 39 H 1.09002 * 109.46894 * 172.16487 * 10 9 8 40 40 H 1.08996 * 109.47349 * 304.80871 * 11 10 9 41 41 H 1.09003 * 109.46983 * 64.80968 * 11 10 9 42 42 H 0.96700 * 114.00245 * 179.97438 * 12 11 10 43 43 H 1.08999 * 113.46569 * 105.37154 * 13 9 8 44 44 H 1.08994 * 113.52284 * 334.93039 * 13 9 8 45 45 H 0.96997 * 119.99996 * 5.29731 * 18 17 15 46 46 H 1.08999 * 113.46235 * 87.43720 * 23 14 13 47 47 H 1.08990 * 113.46963 * 217.87651 * 23 14 13 48 48 H 1.08003 * 120.41574 * 359.97438 * 25 24 4 49 49 H 1.07997 * 120.78705 * 180.21693 * 26 25 24 50 50 H 1.08007 * 120.41609 * 179.71169 * 27 26 25 51 51 H 1.07998 * 119.61979 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 1 3.9329 0.8532 0.8427 6 6 4.0723 2.8579 0.1244 7 8 4.7699 3.3321 -0.7470 8 7 3.7462 3.5967 1.2034 9 6 4.1711 4.9962 1.2885 10 6 5.6770 5.1838 1.0937 11 6 6.4249 4.5723 2.2801 12 8 7.8219 4.8452 2.1543 13 6 3.5920 5.7578 2.4888 14 7 3.4132 6.9166 1.6010 15 6 3.3667 8.2768 1.7524 16 1 3.3887 8.7111 2.7410 17 6 3.2913 9.0973 0.6353 18 7 3.2893 10.4057 0.7787 19 14 3.1851 8.3445 -1.0710 20 1 2.9573 9.4174 -2.0721 21 1 4.4549 7.6397 -1.3810 22 1 2.0586 7.3779 -1.1163 23 6 3.2997 5.9714 0.4800 24 6 4.0729 0.8418 -1.2867 25 6 4.1970 1.6382 -2.4096 26 6 4.6654 1.0769 -3.5875 27 6 4.9828 -0.2729 -3.5947 28 6 4.8281 -1.0073 -2.4345 29 7 4.3844 -0.4388 -1.3304 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9563 0.8899 36 1 1.6766 1.9563 -0.8900 37 1 3.2302 3.2019 1.9237 38 1 5.9887 4.6893 0.1737 39 1 5.9052 6.2478 1.0296 40 1 6.0519 5.0067 3.2076 41 1 6.2650 3.4942 2.2937 42 1 8.3591 4.4865 2.8740 43 1 4.3166 5.9288 3.2850 44 1 2.6531 5.3429 2.8554 45 1 3.4177 10.7975 1.6567 46 1 2.2837 5.6122 0.3163 47 1 3.7752 6.3243 -0.4350 48 1 3.9357 2.6854 -2.3688 49 1 4.7759 1.6757 -4.4795 50 1 5.3460 -0.7444 -4.4960 51 1 5.0728 -2.0592 -2.4320 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675094978.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:59 Heat of formation + Delta-G solvation = 10.826941 kcal Electronic energy + Delta-G solvation = -32073.540260 eV Core-core repulsion = 27975.162971 eV Total energy + Delta-G solvation = -4098.377289 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.02042 -39.97891 -38.36521 -36.54984 -35.92544 -33.93648 -32.61648 -32.29639 -32.10616 -30.66354 -29.22939 -27.30175 -25.72234 -25.27501 -23.67492 -23.40811 -22.67672 -21.66968 -21.10231 -19.99833 -19.06945 -17.54891 -17.34866 -17.26752 -16.95466 -16.28958 -15.94864 -15.66514 -15.35138 -15.27162 -14.90169 -14.46321 -14.31998 -14.00505 -13.80271 -13.56857 -13.48682 -13.33134 -13.13403 -13.03208 -12.63400 -12.27934 -12.17638 -11.96717 -11.92192 -11.65968 -11.52224 -11.32426 -11.29158 -11.13178 -10.86613 -10.84660 -10.50402 -10.34894 -9.96018 -9.80745 -9.54709 -9.49486 -9.23255 -9.12904 -8.98296 -8.93146 -8.69186 -7.23272 -6.34414 -3.29680 1.03540 1.26222 2.62558 3.08240 3.43359 3.47155 3.65630 3.74377 4.07054 4.25481 4.39060 4.57377 4.66386 4.71380 4.71921 4.81565 4.86416 4.90082 4.99957 5.04734 5.08017 5.25673 5.35104 5.35898 5.38060 5.44545 5.47521 5.51147 5.59103 5.64173 5.68757 5.69762 5.80119 5.88078 5.91517 5.99548 6.04661 6.10780 6.14496 6.17906 6.21203 6.25877 6.29652 6.52084 6.65613 6.68542 6.93758 6.99089 7.59267 7.78042 7.88200 8.18754 8.28963 8.92432 9.43919 10.26468 11.16979 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010789 B = 0.003473 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2594.691730 B = 8061.180932 C = 8379.122735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.106 4.106 4 C -0.058 4.058 5 H 0.113 0.887 6 C 0.519 3.481 7 O -0.523 6.523 8 N -0.710 5.710 9 C 0.135 3.865 10 C -0.106 4.106 11 C 0.085 3.915 12 O -0.572 6.572 13 C 0.123 3.877 14 N -0.617 5.617 15 C -0.304 4.304 16 H 0.085 0.915 17 C -0.018 4.018 18 N -0.931 5.931 19 Si 1.068 2.932 20 H -0.295 1.295 21 H -0.288 1.288 22 H -0.290 1.290 23 C 0.097 3.903 24 C 0.138 3.862 25 C -0.128 4.128 26 C -0.085 4.085 27 C -0.174 4.174 28 C 0.086 3.914 29 N -0.478 5.478 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.399 0.601 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.045 0.955 41 H 0.036 0.964 42 H 0.373 0.627 43 H 0.054 0.946 44 H 0.042 0.958 45 H 0.262 0.738 46 H 0.046 0.954 47 H 0.060 0.940 48 H 0.152 0.848 49 H 0.132 0.868 50 H 0.130 0.870 51 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.107 -25.560 -1.490 25.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.145 4.145 4 C -0.080 4.080 5 H 0.131 0.869 6 C 0.304 3.696 7 O -0.399 6.399 8 N -0.361 5.361 9 C 0.048 3.952 10 C -0.144 4.144 11 C 0.007 3.993 12 O -0.376 6.376 13 C -0.005 4.005 14 N -0.345 5.345 15 C -0.430 4.430 16 H 0.102 0.898 17 C -0.217 4.217 18 N -0.573 5.573 19 Si 0.901 3.099 20 H -0.222 1.222 21 H -0.216 1.216 22 H -0.218 1.218 23 C -0.029 4.029 24 C 0.000 4.000 25 C -0.148 4.148 26 C -0.111 4.111 27 C -0.194 4.194 28 C -0.071 4.071 29 N -0.187 5.187 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.234 0.766 38 H 0.113 0.887 39 H 0.109 0.891 40 H 0.063 0.937 41 H 0.054 0.946 42 H 0.218 0.782 43 H 0.072 0.928 44 H 0.060 0.940 45 H 0.072 0.928 46 H 0.064 0.936 47 H 0.077 0.923 48 H 0.170 0.830 49 H 0.150 0.850 50 H 0.148 0.852 51 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -0.107 -24.724 -3.478 24.968 hybrid contribution 0.112 -0.437 1.787 1.843 sum 0.005 -25.161 -1.691 25.218 Atomic orbital electron populations 1.21778 0.95795 1.01546 1.01911 1.21492 0.95539 0.95765 1.02825 1.21609 0.90970 0.98382 1.03506 1.20176 0.97422 0.93621 0.96824 0.86863 1.20270 0.80190 0.87075 0.82054 1.90661 1.37061 1.72627 1.39571 1.45965 1.56335 1.12415 1.21399 1.22471 0.94476 0.78038 1.00207 1.21442 0.90250 1.03714 0.99029 1.22101 0.80945 0.97683 0.98561 1.86525 1.18694 1.81049 1.51339 1.22634 0.97255 0.87402 0.93188 1.45740 1.85229 1.00277 1.03229 1.20108 1.50308 0.76993 0.95565 0.89770 1.25664 0.98911 0.94739 1.02432 1.70925 1.51286 1.09041 1.26039 0.83745 0.76437 0.73648 0.76101 1.22205 1.21575 1.21754 1.23161 0.96729 0.88894 0.94144 1.20414 0.96122 0.89513 0.93998 1.22431 0.97832 1.02161 0.92345 1.21652 0.96157 0.94853 0.98418 1.22115 1.02107 0.95288 0.99915 1.22577 0.96275 1.00008 0.88230 1.67342 1.10841 1.11605 1.28919 0.92599 0.92824 0.92807 0.91640 0.91592 0.90455 0.91033 0.76605 0.88684 0.89058 0.93720 0.94610 0.78172 0.92754 0.94004 0.92823 0.93648 0.92250 0.83039 0.85001 0.85201 0.83064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.91 37.16 0.37 -0.80 16 2 C -0.12 -1.00 5.71 -26.73 -0.15 -1.16 16 3 C -0.11 -0.97 4.62 -26.73 -0.12 -1.10 16 4 C -0.06 -0.63 2.51 -92.92 -0.23 -0.86 16 5 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 6 C 0.52 7.04 6.73 -10.99 -0.07 6.96 16 7 O -0.52 -8.93 10.89 5.55 0.06 -8.87 16 8 N -0.71 -9.10 5.07 -47.30 -0.24 -9.34 16 9 C 0.13 2.30 0.82 -131.57 -0.11 2.19 16 10 C -0.11 -1.95 4.91 -26.73 -0.13 -2.09 16 11 C 0.08 1.27 6.89 37.16 0.26 1.53 16 12 O -0.57 -8.80 13.66 -35.23 -0.48 -9.28 16 13 C 0.12 2.22 7.81 -8.49 -0.07 2.15 16 14 N -0.62 -14.73 3.46 -184.54 -0.64 -15.37 16 15 C -0.30 -8.62 11.09 -15.06 -0.17 -8.79 16 16 H 0.08 2.50 8.05 -52.49 -0.42 2.07 16 17 C -0.02 -0.54 5.50 -17.43 -0.10 -0.64 16 18 N -0.93 -29.39 13.70 55.49 0.76 -28.63 16 19 Si 1.07 27.54 25.05 -169.99 -4.26 23.28 16 20 H -0.29 -7.69 7.11 56.52 0.40 -7.29 16 21 H -0.29 -7.23 6.51 56.52 0.37 -6.86 16 22 H -0.29 -7.01 6.53 56.52 0.37 -6.64 16 23 C 0.10 2.07 5.30 -8.36 -0.04 2.02 16 24 C 0.14 1.70 4.88 -82.58 -0.40 1.30 16 25 C -0.13 -1.66 8.27 -39.44 -0.33 -1.99 16 26 C -0.08 -0.93 10.18 -39.28 -0.40 -1.33 16 27 C -0.17 -1.65 10.11 -39.44 -0.40 -2.05 16 28 C 0.09 0.86 11.18 -17.55 -0.20 0.67 16 29 N -0.48 -5.68 9.61 -9.47 -0.09 -5.77 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.65 6.89 -51.93 -0.36 0.29 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.60 7.50 -51.93 -0.39 0.21 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.40 3.77 8.15 -40.82 -0.33 3.44 16 38 H 0.09 1.88 5.78 -51.93 -0.30 1.58 16 39 H 0.09 2.00 7.94 -51.93 -0.41 1.59 16 40 H 0.04 0.63 6.63 -51.93 -0.34 0.29 16 41 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.37 3.67 9.12 45.56 0.42 4.09 16 43 H 0.05 0.95 6.70 -51.93 -0.35 0.61 16 44 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.26 8.12 8.73 -40.82 -0.36 7.76 16 46 H 0.05 0.94 8.07 -51.93 -0.42 0.52 16 47 H 0.06 1.40 3.99 -51.93 -0.21 1.19 16 48 H 0.15 2.18 5.97 -52.48 -0.31 1.86 16 49 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 50 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 51 H 0.15 1.08 8.06 -52.49 -0.42 0.65 16 LS Contribution 400.83 15.07 6.04 6.04 Total: -1.00 -35.56 400.83 -8.44 -44.01 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -7.30 Total: 7.90 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: -2.30 Total: -3.97 kcal Atomic # 7 Polarization: -58.90 SS G_CDS: -0.21 Total: -59.11 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: -0.42 Total: -18.15 kcal Atomic # 14 Polarization: 27.54 SS G_CDS: -4.26 Total: 23.28 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.56 -8.44 -44.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675094978.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.836 kcal (2) G-P(sol) polarization free energy of solvation -35.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds