Wall clock time and date at job start Wed Apr 1 2020 05:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47085 * 2 1 4 4 C 1.52995 * 109.47273 * 175.97890 * 3 2 1 5 5 H 1.09006 * 109.46958 * 306.79928 * 4 3 2 6 6 C 1.50701 * 109.47244 * 66.79467 * 4 3 2 7 7 O 1.21282 * 119.99834 * 112.48054 * 6 4 3 8 8 N 1.34780 * 119.99947 * 292.48671 * 6 4 3 9 9 C 1.46499 * 119.99914 * 175.27124 * 8 6 4 10 10 C 1.53000 * 112.94471 * 301.38820 * 9 8 6 11 11 C 1.52999 * 109.47377 * 302.47470 * 10 9 8 12 12 O 1.42899 * 109.47658 * 185.10749 * 11 10 9 13 13 C 1.53944 * 113.74281 * 169.79594 * 9 8 6 14 14 N 1.47805 * 86.03774 * 222.08263 * 13 9 8 15 15 C 1.36936 * 134.45927 * 204.64615 * 14 13 9 16 16 H 1.07997 * 120.00582 * 179.87067 * 15 14 13 17 17 C 1.38810 * 119.99697 * 359.86283 * 15 14 13 18 18 N 1.31617 * 120.00421 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00064 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46799 * 60.00527 * 19 17 15 21 21 H 1.48503 * 109.47235 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47392 * 300.00340 * 19 17 15 23 23 C 1.47581 * 91.05354 * 24.54762 * 14 13 9 24 24 C 1.50693 * 109.47467 * 186.79804 * 4 3 2 25 25 C 1.38229 * 119.61688 * 274.99999 * 24 4 3 26 26 C 1.38631 * 119.16187 * 179.97438 * 25 24 4 27 27 C 1.38674 * 118.42050 * 359.97438 * 26 25 24 28 28 C 1.38181 * 119.16062 * 0.02562 * 27 26 25 29 29 N 1.31857 * 119.61958 * 94.72359 * 24 4 3 30 30 H 1.09001 * 109.47304 * 59.99930 * 1 2 3 31 31 H 1.09001 * 109.47465 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47305 * 299.99821 * 1 2 3 33 33 H 1.09001 * 109.47304 * 120.00070 * 2 1 3 34 34 H 1.09001 * 109.46972 * 240.00525 * 2 1 3 35 35 H 1.08996 * 109.47385 * 295.97891 * 3 2 1 36 36 H 1.08998 * 109.47024 * 55.98157 * 3 2 1 37 37 H 0.97001 * 119.99805 * 355.26572 * 8 6 4 38 38 H 1.09006 * 109.46976 * 62.47142 * 10 9 8 39 39 H 1.08991 * 109.47505 * 182.47049 * 10 9 8 40 40 H 1.09003 * 109.47118 * 305.10982 * 11 10 9 41 41 H 1.09009 * 109.47231 * 65.10038 * 11 10 9 42 42 H 0.96695 * 113.99898 * 179.97438 * 12 11 10 43 43 H 1.09000 * 113.76944 * 336.35278 * 13 9 8 44 44 H 1.09004 * 113.76413 * 107.74437 * 13 9 8 45 45 H 0.96995 * 120.00773 * 179.97438 * 18 17 15 46 46 H 1.09004 * 113.77270 * 221.15159 * 23 14 13 47 47 H 1.09005 * 113.86788 * 89.76735 * 23 14 13 48 48 H 1.07996 * 120.42037 * 359.97438 * 25 24 4 49 49 H 1.07997 * 120.79373 * 180.02562 * 26 25 24 50 50 H 1.07998 * 120.41810 * 180.02562 * 27 26 25 51 51 H 1.08003 * 119.61413 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5665 1.4437 0.1011 5 1 3.8742 0.8478 0.9605 6 6 4.1537 0.8539 -1.1552 7 8 4.7857 1.5554 -1.9165 8 7 3.9765 -0.4530 -1.4328 9 6 4.4572 -1.0039 -2.7024 10 6 3.8438 -0.3137 -3.9223 11 6 2.3192 -0.4242 -3.8580 12 8 1.7516 0.1144 -5.0537 13 6 4.4071 -2.5410 -2.7695 14 7 5.7348 -2.4538 -3.4132 15 6 6.4439 -3.2610 -4.2622 16 1 7.4245 -2.9601 -4.6004 17 6 5.9025 -4.4661 -4.6881 18 7 4.7074 -4.8327 -4.2764 19 14 6.8695 -5.5669 -5.8469 20 1 8.1510 -5.9562 -5.2055 21 1 6.0764 -6.7855 -6.1491 22 1 7.1495 -4.8339 -7.1077 23 6 5.9882 -1.1471 -2.7759 24 6 4.0578 2.8584 0.2691 25 6 4.2604 3.6483 -0.8470 26 6 4.7119 4.9485 -0.6815 27 6 4.9434 5.4079 0.6063 28 6 4.7183 4.5603 1.6741 29 7 4.2841 3.3303 1.4794 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.7367 1.9351 -0.9238 36 1 1.6190 1.9767 0.8518 37 1 3.5308 -1.0288 -0.7920 38 1 4.1319 0.7376 -3.9281 39 1 4.2049 -0.7943 -4.8315 40 1 2.0346 -1.4720 -3.7608 41 1 1.9504 0.1338 -2.9973 42 1 0.7858 0.0769 -5.0822 43 1 4.4233 -3.0243 -1.7926 44 1 3.6250 -2.9269 -3.4234 45 1 4.3288 -5.6746 -4.5743 46 1 6.4662 -0.4221 -3.4348 47 1 6.4701 -1.2180 -1.8007 48 1 4.0693 3.2575 -1.8355 49 1 4.8787 5.5887 -1.5351 50 1 5.2950 6.4154 0.7725 51 1 4.8958 4.9106 2.6802 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675094979.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:02 Heat of formation + Delta-G solvation = 5.861271 kcal Electronic energy + Delta-G solvation = -32233.039062 eV Core-core repulsion = 28134.446446 eV Total energy + Delta-G solvation = -4098.592616 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.92507 -39.72688 -38.02353 -36.38669 -35.83582 -33.70920 -32.69673 -32.07743 -31.89143 -30.38031 -29.13006 -27.07883 -25.21272 -25.09332 -23.67017 -23.50575 -22.49848 -21.67817 -21.38185 -20.04176 -18.65947 -17.41867 -17.05628 -16.80781 -16.78058 -15.90851 -15.74335 -15.55260 -15.30817 -14.87006 -14.73155 -14.31643 -14.08224 -13.80471 -13.76162 -13.57612 -13.53247 -13.38233 -13.02707 -12.58262 -12.37695 -12.17018 -11.91716 -11.81589 -11.72379 -11.66710 -11.19134 -11.08112 -11.01217 -10.94224 -10.86486 -10.75987 -10.68993 -10.19662 -9.96449 -9.87471 -9.68879 -9.56627 -9.46201 -9.09380 -8.91928 -8.89295 -8.58362 -6.94743 -5.82008 -3.13799 1.07378 1.30580 2.77712 3.25553 3.39610 3.43454 3.44507 3.78453 4.14047 4.42277 4.46850 4.58546 4.74174 4.75048 4.83974 4.92537 4.96243 5.07780 5.15056 5.18103 5.21128 5.30165 5.41722 5.46176 5.49663 5.52806 5.58948 5.67197 5.71124 5.73680 5.79035 5.86659 5.92144 5.95286 6.02494 6.14093 6.16763 6.22948 6.30960 6.45148 6.48664 6.61826 6.70422 6.74395 6.82124 7.08716 7.27849 7.45909 7.76381 7.88751 7.92362 7.93545 8.45215 8.99859 9.66063 10.51951 11.35537 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013282 B = 0.003106 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.679809 B = 9013.600131 C = 9779.354225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.143 4.143 3 C -0.100 4.100 4 C -0.060 4.060 5 H 0.111 0.889 6 C 0.520 3.480 7 O -0.528 6.528 8 N -0.710 5.710 9 C 0.123 3.877 10 C -0.096 4.096 11 C 0.082 3.918 12 O -0.574 6.574 13 C 0.166 3.834 14 N -0.603 5.603 15 C -0.221 4.221 16 H 0.081 0.919 17 C -0.006 4.006 18 N -0.922 5.922 19 Si 0.913 3.087 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.283 1.283 23 C 0.125 3.875 24 C 0.133 3.867 25 C -0.131 4.131 26 C -0.088 4.088 27 C -0.175 4.175 28 C 0.086 3.914 29 N -0.481 5.481 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.399 0.601 38 H 0.077 0.923 39 H 0.090 0.910 40 H 0.049 0.951 41 H 0.036 0.964 42 H 0.371 0.629 43 H 0.030 0.970 44 H 0.082 0.918 45 H 0.255 0.745 46 H 0.051 0.949 47 H 0.035 0.965 48 H 0.161 0.839 49 H 0.131 0.869 50 H 0.130 0.870 51 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.224 15.923 11.119 21.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.181 4.181 3 C -0.138 4.138 4 C -0.083 4.083 5 H 0.129 0.871 6 C 0.306 3.694 7 O -0.406 6.406 8 N -0.363 5.363 9 C 0.037 3.963 10 C -0.134 4.134 11 C 0.005 3.995 12 O -0.378 6.378 13 C 0.040 3.960 14 N -0.330 5.330 15 C -0.348 4.348 16 H 0.099 0.901 17 C -0.202 4.202 18 N -0.569 5.569 19 Si 0.743 3.257 20 H -0.212 1.212 21 H -0.215 1.215 22 H -0.210 1.210 23 C -0.002 4.002 24 C -0.005 4.005 25 C -0.150 4.150 26 C -0.114 4.114 27 C -0.195 4.195 28 C -0.071 4.071 29 N -0.190 5.190 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.236 0.764 38 H 0.095 0.905 39 H 0.109 0.891 40 H 0.067 0.933 41 H 0.054 0.946 42 H 0.217 0.783 43 H 0.048 0.952 44 H 0.101 0.899 45 H 0.065 0.935 46 H 0.069 0.931 47 H 0.053 0.947 48 H 0.179 0.821 49 H 0.149 0.851 50 H 0.148 0.852 51 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -8.221 15.665 10.929 20.794 hybrid contribution 0.079 -0.486 -0.567 0.751 sum -8.143 15.178 10.362 20.101 Atomic orbital electron populations 1.21717 0.95280 1.01944 1.01691 1.21908 0.96733 0.96243 1.03188 1.21521 0.91039 0.98059 1.03220 1.20174 0.97022 0.92789 0.98291 0.87061 1.20209 0.79781 0.82563 0.86892 1.90607 1.40318 1.59177 1.50475 1.46493 1.60102 1.09011 1.20698 1.22988 0.95503 0.95916 0.81874 1.21324 0.92430 1.01817 0.97823 1.22157 0.94757 0.96970 0.85658 1.86501 1.24527 1.85281 1.41494 1.22586 0.90666 0.86613 0.96120 1.45678 1.16759 1.19445 1.51105 1.18950 0.98989 0.98565 1.18313 0.90076 1.24757 0.97126 0.97690 1.00635 1.69763 1.15981 1.23318 1.47878 0.86180 0.78850 0.79946 0.80679 1.21185 1.21545 1.20988 1.22834 0.92596 0.88677 0.96068 1.20505 0.96468 0.94840 0.88689 1.22692 0.97199 0.93139 1.01994 1.21678 0.96568 0.95821 0.97303 1.22120 1.02204 1.01242 0.93937 1.22578 0.96156 0.89230 0.99178 1.67328 1.11679 1.15099 1.24863 0.92788 0.92345 0.92816 0.91240 0.90445 0.91258 0.90524 0.76382 0.90492 0.89137 0.93324 0.94594 0.78310 0.95232 0.89943 0.93537 0.93103 0.94708 0.82139 0.85075 0.85242 0.83068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.91 37.15 0.37 -0.78 16 2 C -0.14 -1.22 4.91 -26.73 -0.13 -1.35 16 3 C -0.10 -0.95 4.64 -26.73 -0.12 -1.08 16 4 C -0.06 -0.71 2.55 -92.93 -0.24 -0.94 16 5 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 6 C 0.52 7.41 6.55 -10.98 -0.07 7.33 16 7 O -0.53 -9.03 11.06 5.56 0.06 -8.96 16 8 N -0.71 -10.07 3.58 -49.08 -0.18 -10.24 16 9 C 0.12 2.24 0.67 -134.04 -0.09 2.15 16 10 C -0.10 -1.76 4.72 -26.73 -0.13 -1.89 16 11 C 0.08 1.27 6.79 37.16 0.25 1.52 16 12 O -0.57 -8.83 13.66 -35.23 -0.48 -9.31 16 13 C 0.17 3.63 6.62 -2.84 -0.02 3.61 16 14 N -0.60 -15.11 3.55 -177.52 -0.63 -15.74 16 15 C -0.22 -6.12 10.70 -15.06 -0.16 -6.28 16 16 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 17 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 18 N -0.92 -26.37 11.39 55.49 0.63 -25.74 16 19 Si 0.91 21.97 29.55 -169.99 -5.02 16.94 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 23 C 0.13 2.67 7.94 -2.97 -0.02 2.64 16 24 C 0.13 1.74 5.73 -82.59 -0.47 1.27 16 25 C -0.13 -1.72 8.34 -39.44 -0.33 -2.04 16 26 C -0.09 -0.97 10.18 -39.28 -0.40 -1.37 16 27 C -0.18 -1.71 10.11 -39.44 -0.40 -2.11 16 28 C 0.09 0.92 11.18 -17.55 -0.20 0.72 16 29 N -0.48 -6.21 10.27 -9.47 -0.10 -6.30 16 30 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.74 4.73 -51.93 -0.25 0.49 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.40 4.78 6.42 -40.82 -0.26 4.52 16 38 H 0.08 1.47 6.61 -51.93 -0.34 1.12 16 39 H 0.09 1.98 8.02 -51.93 -0.42 1.56 16 40 H 0.05 0.77 7.26 -51.93 -0.38 0.39 16 41 H 0.04 0.48 7.15 -51.92 -0.37 0.11 16 42 H 0.37 3.77 9.12 45.56 0.42 4.18 16 43 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.08 1.98 6.39 -51.93 -0.33 1.65 16 45 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 46 H 0.05 1.11 8.10 -51.93 -0.42 0.69 16 47 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.16 2.29 5.68 -52.49 -0.30 1.99 16 49 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 50 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 51 H 0.15 1.17 8.06 -52.48 -0.42 0.74 16 LS Contribution 404.47 15.07 6.10 6.10 Total: -1.00 -33.11 404.47 -9.14 -42.25 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -7.27 Total: 9.87 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: -2.26 Total: 1.14 kcal Atomic # 7 Polarization: -57.76 SS G_CDS: -0.27 Total: -58.03 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -0.42 Total: -18.28 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.11 -9.14 -42.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675094979.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.116 kcal (2) G-P(sol) polarization free energy of solvation -33.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds