Wall clock time and date at job start Wed Apr 1 2020 05:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47085 * 2 1 4 4 C 1.52995 * 109.47273 * 175.97890 * 3 2 1 5 5 H 1.09006 * 109.46958 * 306.79928 * 4 3 2 6 6 C 1.50701 * 109.47244 * 66.79467 * 4 3 2 7 7 O 1.21282 * 119.99834 * 112.48054 * 6 4 3 8 8 N 1.34780 * 119.99947 * 292.48671 * 6 4 3 9 9 C 1.46499 * 119.99914 * 175.27124 * 8 6 4 10 10 C 1.53000 * 112.94471 * 301.38820 * 9 8 6 11 11 C 1.52999 * 109.47377 * 302.47470 * 10 9 8 12 12 O 1.42899 * 109.47658 * 185.10749 * 11 10 9 13 13 C 1.53944 * 113.74281 * 169.79594 * 9 8 6 14 14 N 1.47805 * 86.03774 * 222.08263 * 13 9 8 15 15 C 1.36936 * 134.45927 * 204.64615 * 14 13 9 16 16 H 1.07997 * 120.00582 * 179.87067 * 15 14 13 17 17 C 1.38810 * 119.99697 * 359.86283 * 15 14 13 18 18 N 1.31617 * 120.00421 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00064 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46799 * 60.00527 * 19 17 15 21 21 H 1.48503 * 109.47235 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47392 * 300.00340 * 19 17 15 23 23 C 1.47581 * 91.05354 * 24.54762 * 14 13 9 24 24 C 1.50693 * 109.47467 * 186.79804 * 4 3 2 25 25 C 1.38229 * 119.61688 * 274.99999 * 24 4 3 26 26 C 1.38631 * 119.16187 * 179.97438 * 25 24 4 27 27 C 1.38674 * 118.42050 * 359.97438 * 26 25 24 28 28 C 1.38181 * 119.16062 * 0.02562 * 27 26 25 29 29 N 1.31857 * 119.61958 * 94.72359 * 24 4 3 30 30 H 1.09001 * 109.47304 * 59.99930 * 1 2 3 31 31 H 1.09001 * 109.47465 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47305 * 299.99821 * 1 2 3 33 33 H 1.09001 * 109.47304 * 120.00070 * 2 1 3 34 34 H 1.09001 * 109.46972 * 240.00525 * 2 1 3 35 35 H 1.08996 * 109.47385 * 295.97891 * 3 2 1 36 36 H 1.08998 * 109.47024 * 55.98157 * 3 2 1 37 37 H 0.97001 * 119.99805 * 355.26572 * 8 6 4 38 38 H 1.09006 * 109.46976 * 62.47142 * 10 9 8 39 39 H 1.08991 * 109.47505 * 182.47049 * 10 9 8 40 40 H 1.09003 * 109.47118 * 305.10982 * 11 10 9 41 41 H 1.09009 * 109.47231 * 65.10038 * 11 10 9 42 42 H 0.96695 * 113.99898 * 179.97438 * 12 11 10 43 43 H 1.09000 * 113.76944 * 336.35278 * 13 9 8 44 44 H 1.09004 * 113.76413 * 107.74437 * 13 9 8 45 45 H 0.96995 * 120.00773 * 179.97438 * 18 17 15 46 46 H 1.09004 * 113.77270 * 221.15159 * 23 14 13 47 47 H 1.09005 * 113.86788 * 89.76735 * 23 14 13 48 48 H 1.07996 * 120.42037 * 359.97438 * 25 24 4 49 49 H 1.07997 * 120.79373 * 180.02562 * 26 25 24 50 50 H 1.07998 * 120.41810 * 180.02562 * 27 26 25 51 51 H 1.08003 * 119.61413 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5665 1.4437 0.1011 5 1 3.8742 0.8478 0.9605 6 6 4.1537 0.8539 -1.1552 7 8 4.7857 1.5554 -1.9165 8 7 3.9765 -0.4530 -1.4328 9 6 4.4572 -1.0039 -2.7024 10 6 3.8438 -0.3137 -3.9223 11 6 2.3192 -0.4242 -3.8580 12 8 1.7516 0.1144 -5.0537 13 6 4.4071 -2.5410 -2.7695 14 7 5.7348 -2.4538 -3.4132 15 6 6.4439 -3.2610 -4.2622 16 1 7.4245 -2.9601 -4.6004 17 6 5.9025 -4.4661 -4.6881 18 7 4.7074 -4.8327 -4.2764 19 14 6.8695 -5.5669 -5.8469 20 1 8.1510 -5.9562 -5.2055 21 1 6.0764 -6.7855 -6.1491 22 1 7.1495 -4.8339 -7.1077 23 6 5.9882 -1.1471 -2.7759 24 6 4.0578 2.8584 0.2691 25 6 4.2604 3.6483 -0.8470 26 6 4.7119 4.9485 -0.6815 27 6 4.9434 5.4079 0.6063 28 6 4.7183 4.5603 1.6741 29 7 4.2841 3.3303 1.4794 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.7367 1.9351 -0.9238 36 1 1.6190 1.9767 0.8518 37 1 3.5308 -1.0288 -0.7920 38 1 4.1319 0.7376 -3.9281 39 1 4.2049 -0.7943 -4.8315 40 1 2.0346 -1.4720 -3.7608 41 1 1.9504 0.1338 -2.9973 42 1 0.7858 0.0769 -5.0822 43 1 4.4233 -3.0243 -1.7926 44 1 3.6250 -2.9269 -3.4234 45 1 4.3288 -5.6746 -4.5743 46 1 6.4662 -0.4221 -3.4348 47 1 6.4701 -1.2180 -1.8007 48 1 4.0693 3.2575 -1.8355 49 1 4.8787 5.5887 -1.5351 50 1 5.2950 6.4154 0.7725 51 1 4.8958 4.9106 2.6802 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675094979.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:01 Heat of formation + Delta-G solvation = -16.928776 kcal Electronic energy + Delta-G solvation = -32234.027313 eV Core-core repulsion = 28134.446446 eV Total energy + Delta-G solvation = -4099.580867 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.04445 -40.91203 -39.40874 -37.68215 -36.73827 -35.26897 -33.71568 -33.50388 -32.93094 -31.88033 -30.00399 -28.94997 -26.86622 -26.05588 -25.18519 -24.39224 -23.65005 -23.04018 -22.35041 -21.23000 -20.12417 -18.78258 -18.51358 -18.23065 -17.67119 -17.20506 -16.83206 -16.69573 -16.59928 -16.30673 -15.98205 -15.64141 -15.46889 -15.14690 -14.84789 -14.60911 -14.55986 -14.38793 -14.17457 -13.84621 -13.62784 -13.34984 -13.32292 -13.07544 -12.98878 -12.86815 -12.76798 -12.59908 -12.52164 -12.22872 -12.08164 -12.01877 -11.76931 -11.72328 -11.55159 -11.38153 -10.93745 -10.86820 -10.75422 -10.44283 -10.27451 -9.97935 -9.79566 -8.96245 -7.93180 -5.26015 0.22539 0.44243 1.45630 1.48474 1.54249 1.61529 2.03936 2.48373 2.92056 3.15166 3.23783 3.27527 3.37990 3.62158 3.63468 3.94149 3.99612 4.08636 4.11798 4.14631 4.24834 4.29361 4.33004 4.33834 4.35448 4.49549 4.51427 4.67919 4.71548 4.72837 4.75954 4.84317 4.87088 4.94885 4.97932 5.05417 5.07533 5.14242 5.18356 5.22892 5.29476 5.32012 5.37767 5.40876 5.47502 5.49782 5.71962 5.87177 5.89568 6.58646 6.90185 6.92238 7.06438 7.28234 7.56631 8.49795 9.23359 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013282 B = 0.003106 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.679809 B = 9013.600131 C = 9779.354225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.141 4.141 3 C -0.091 4.091 4 C -0.050 4.050 5 H 0.121 0.879 6 C 0.522 3.478 7 O -0.555 6.555 8 N -0.700 5.700 9 C 0.158 3.842 10 C -0.089 4.089 11 C 0.093 3.907 12 O -0.592 6.592 13 C 0.172 3.828 14 N -0.630 5.630 15 C -0.240 4.240 16 H 0.078 0.922 17 C -0.056 4.056 18 N -0.945 5.945 19 Si 0.976 3.024 20 H -0.279 1.279 21 H -0.289 1.289 22 H -0.280 1.280 23 C 0.122 3.878 24 C 0.116 3.884 25 C -0.153 4.153 26 C -0.095 4.095 27 C -0.168 4.168 28 C 0.078 3.922 29 N -0.499 5.499 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.081 0.919 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.085 0.915 37 H 0.413 0.587 38 H 0.070 0.930 39 H 0.050 0.950 40 H 0.045 0.955 41 H 0.062 0.938 42 H 0.396 0.604 43 H 0.034 0.966 44 H 0.060 0.940 45 H 0.251 0.749 46 H 0.039 0.961 47 H 0.040 0.960 48 H 0.143 0.857 49 H 0.148 0.852 50 H 0.163 0.837 51 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.953 17.277 12.749 23.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.179 4.179 3 C -0.129 4.129 4 C -0.072 4.072 5 H 0.139 0.861 6 C 0.309 3.691 7 O -0.434 6.434 8 N -0.354 5.354 9 C 0.071 3.929 10 C -0.128 4.128 11 C 0.015 3.985 12 O -0.400 6.400 13 C 0.046 3.954 14 N -0.357 5.357 15 C -0.368 4.368 16 H 0.096 0.904 17 C -0.250 4.250 18 N -0.593 5.593 19 Si 0.804 3.196 20 H -0.205 1.205 21 H -0.215 1.215 22 H -0.206 1.206 23 C -0.005 4.005 24 C -0.022 4.022 25 C -0.172 4.172 26 C -0.121 4.121 27 C -0.188 4.188 28 C -0.079 4.079 29 N -0.209 5.209 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.100 0.900 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.103 0.897 37 H 0.253 0.747 38 H 0.089 0.911 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.080 0.920 42 H 0.245 0.755 43 H 0.051 0.949 44 H 0.078 0.922 45 H 0.060 0.940 46 H 0.058 0.942 47 H 0.058 0.942 48 H 0.161 0.839 49 H 0.166 0.834 50 H 0.181 0.819 51 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -8.982 17.037 12.590 23.010 hybrid contribution 0.342 -0.757 -1.040 1.331 sum -8.641 16.280 11.550 21.751 Atomic orbital electron populations 1.21706 0.94468 1.02272 1.02062 1.21895 0.97422 0.95386 1.03202 1.21478 0.89324 0.98831 1.03270 1.20128 0.98165 0.92346 0.96565 0.86095 1.20681 0.79047 0.81888 0.87445 1.90619 1.41409 1.59773 1.51617 1.46250 1.60199 1.09493 1.19502 1.22201 0.93284 0.93765 0.83665 1.21180 0.94912 1.00622 0.96057 1.21975 0.92501 0.97245 0.86735 1.86439 1.26950 1.85176 1.41420 1.22469 0.88693 0.88950 0.95297 1.45953 1.17965 1.20359 1.51438 1.19258 0.99266 0.99245 1.19001 0.90435 1.25518 0.98191 0.98936 1.02331 1.69916 1.17077 1.23400 1.48911 0.85199 0.77650 0.77954 0.78778 1.20507 1.21528 1.20604 1.22928 0.94995 0.87000 0.95553 1.20620 0.97277 0.95315 0.88945 1.22624 0.98876 0.94443 1.01276 1.21981 0.95985 0.95329 0.98827 1.22478 1.00793 1.02570 0.92923 1.23183 0.95086 0.88658 1.00939 1.67353 1.12554 1.16375 1.24574 0.92881 0.92049 0.92037 0.90028 0.91561 0.91861 0.89669 0.74685 0.91115 0.93157 0.93697 0.91968 0.75495 0.94862 0.92218 0.93951 0.94242 0.94200 0.83944 0.83377 0.81895 0.80155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.91 71.98 0.71 -1.24 16 2 C -0.14 -2.11 4.91 30.59 0.15 -1.96 16 3 C -0.09 -1.57 4.64 30.59 0.14 -1.43 16 4 C -0.05 -1.11 2.55 -12.29 -0.03 -1.14 16 5 H 0.12 2.45 8.14 -2.38 -0.02 2.43 16 6 C 0.52 14.62 6.55 87.66 0.57 15.19 16 7 O -0.56 -19.17 11.06 -3.04 -0.03 -19.20 16 8 N -0.70 -19.48 3.58 -427.57 -1.53 -21.02 16 9 C 0.16 5.84 0.67 5.36 0.00 5.85 16 10 C -0.09 -3.38 4.72 30.59 0.14 -3.23 16 11 C 0.09 2.85 6.79 71.98 0.49 3.33 16 12 O -0.59 -17.84 13.66 -148.98 -2.04 -19.87 16 13 C 0.17 7.66 6.62 86.44 0.57 8.23 16 14 N -0.63 -32.56 3.55 -715.54 -2.54 -35.09 16 15 C -0.24 -13.63 10.70 84.03 0.90 -12.73 16 16 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 17 C -0.06 -3.16 5.50 84.86 0.47 -2.69 16 18 N -0.95 -55.06 11.39 21.65 0.25 -54.81 16 19 Si 0.98 45.75 29.55 68.60 2.03 47.78 16 20 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 21 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 22 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 23 C 0.12 5.33 7.94 86.49 0.69 6.02 16 24 C 0.12 2.92 5.73 42.55 0.24 3.16 16 25 C -0.15 -3.94 8.34 22.36 0.19 -3.75 16 26 C -0.10 -1.97 10.18 22.47 0.23 -1.74 16 27 C -0.17 -2.83 10.11 22.36 0.23 -2.60 16 28 C 0.08 1.47 11.18 84.67 0.95 2.42 16 29 N -0.50 -12.00 10.27 -183.89 -1.89 -13.89 16 30 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.06 0.78 8.14 -2.39 -0.02 0.77 16 32 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.07 1.14 4.73 -2.39 -0.01 1.13 16 35 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.41 9.39 6.42 -92.71 -0.60 8.79 16 38 H 0.07 2.77 6.61 -2.38 -0.02 2.76 16 39 H 0.05 2.31 8.02 -2.39 -0.02 2.29 16 40 H 0.04 1.42 7.26 -2.39 -0.02 1.40 16 41 H 0.06 1.59 7.15 -2.38 -0.02 1.57 16 42 H 0.40 7.43 9.12 -74.06 -0.68 6.75 16 43 H 0.03 1.46 8.14 -2.39 -0.02 1.45 16 44 H 0.06 2.95 6.39 -2.39 -0.02 2.94 16 45 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 46 H 0.04 1.80 8.10 -2.38 -0.02 1.78 16 47 H 0.04 1.72 8.14 -2.38 -0.02 1.70 16 48 H 0.14 4.16 5.68 -2.91 -0.02 4.14 16 49 H 0.15 2.41 8.06 -2.91 -0.02 2.38 16 50 H 0.16 1.58 8.06 -2.91 -0.02 1.56 16 51 H 0.18 2.16 8.06 -2.91 -0.02 2.14 16 Total: -1.00 -73.19 404.47 0.57 -72.62 By element: Atomic # 1 Polarization: 32.13 SS G_CDS: -0.32 Total: 31.81 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: 6.64 Total: 11.68 kcal Atomic # 7 Polarization: -119.10 SS G_CDS: -5.71 Total: -124.81 kcal Atomic # 8 Polarization: -37.01 SS G_CDS: -2.07 Total: -39.07 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -73.19 0.57 -72.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675094979.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.696 kcal (2) G-P(sol) polarization free energy of solvation -73.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds