Wall clock time and date at job start Wed Apr 1 2020 04:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46726 * 2 1 4 4 C 1.53007 * 109.46962 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.47009 * 180.02562 * 4 3 2 6 6 H 1.09006 * 109.46937 * 304.99879 * 5 4 3 7 7 C 1.52994 * 109.46908 * 184.99947 * 5 4 3 8 8 N 1.46502 * 109.47145 * 184.99946 * 7 5 4 9 9 C 1.36932 * 120.00187 * 179.72335 * 8 7 5 10 10 H 1.07998 * 120.00152 * 0.27899 * 9 8 7 11 11 C 1.38814 * 120.00281 * 180.27107 * 9 8 7 12 12 N 1.31620 * 120.00179 * 179.97438 * 11 9 8 13 13 Si 1.86806 * 119.99732 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.47330 * 89.99443 * 13 11 9 15 15 H 1.48495 * 109.46665 * 209.99968 * 13 11 9 16 16 H 1.48500 * 109.46768 * 329.99503 * 13 11 9 17 17 N 1.46502 * 109.47084 * 64.99829 * 5 4 3 18 18 C 1.34779 * 119.99986 * 274.99880 * 17 5 4 19 19 O 1.21555 * 120.00012 * 359.97438 * 18 17 5 20 20 C 1.47859 * 119.99921 * 180.02562 * 18 17 5 21 21 C 1.39614 * 120.11149 * 359.71955 * 20 18 17 22 22 C 1.37980 * 119.99365 * 179.74828 * 21 20 18 23 23 C 1.38254 * 120.22370 * 0.53343 * 22 21 20 24 24 C 1.38947 * 120.22371 * 359.74423 * 23 22 21 25 25 N 1.39949 * 120.00211 * 180.02562 * 24 23 22 26 26 C 1.34780 * 120.00231 * 213.32515 * 25 24 23 27 27 C 1.50700 * 120.00110 * 185.27127 * 26 25 24 28 28 O 1.21288 * 119.99592 * 5.27081 * 26 25 24 29 29 C 1.38638 * 119.99932 * 359.97438 * 24 23 22 30 30 H 1.09005 * 109.46700 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47105 * 299.99172 * 1 2 3 32 32 H 1.08998 * 109.47441 * 59.99814 * 1 2 3 33 33 H 1.09007 * 109.47105 * 240.00827 * 2 1 3 34 34 H 1.08998 * 109.47441 * 120.00186 * 2 1 3 35 35 H 1.08999 * 109.47247 * 60.00413 * 3 2 1 36 36 H 1.08998 * 109.47312 * 300.00264 * 3 2 1 37 37 H 1.08999 * 109.47163 * 59.99919 * 4 3 2 38 38 H 1.09007 * 109.46884 * 299.99748 * 4 3 2 39 39 H 1.08995 * 109.47548 * 64.99715 * 7 5 4 40 40 H 1.09005 * 109.47123 * 304.99843 * 7 5 4 41 41 H 0.97001 * 119.99944 * 359.97438 * 8 7 5 42 42 H 0.96998 * 120.00006 * 180.02562 * 12 11 9 43 43 H 0.96996 * 119.99910 * 95.00239 * 17 5 4 44 44 H 1.08000 * 120.00232 * 0.02562 * 21 20 18 45 45 H 1.07999 * 119.88819 * 180.25478 * 22 21 20 46 46 H 1.07995 * 119.88805 * 179.76185 * 23 22 21 47 47 H 0.97004 * 120.00281 * 33.31953 * 25 24 23 48 48 H 1.08995 * 109.47129 * 359.97438 * 27 26 25 49 49 H 1.09000 * 109.46947 * 119.99944 * 27 26 25 50 50 H 1.09001 * 109.47169 * 239.99779 * 27 26 25 51 51 H 1.08003 * 120.11025 * 180.02562 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0799 2.8852 0.0000 6 1 3.6449 3.4247 -0.8414 7 6 5.6046 2.8871 -0.1263 8 7 6.1029 4.2595 -0.0060 9 6 7.4471 4.5091 -0.0824 10 1 8.1397 3.6948 -0.2359 11 6 7.9196 5.8089 0.0373 12 7 9.2118 6.0487 -0.0356 13 14 6.7218 7.2174 0.3033 14 1 6.5146 7.4228 1.7594 15 1 7.2747 8.4575 -0.2980 16 1 5.4237 6.8914 -0.3402 17 7 3.6928 3.5394 1.2524 18 6 2.4755 4.1062 1.3683 19 8 1.6990 4.0750 0.4336 20 6 2.0850 4.7670 2.6321 21 6 2.9732 4.8000 3.7087 22 6 2.6083 5.4218 4.8852 23 6 1.3602 6.0040 5.0066 24 6 0.4668 5.9714 3.9429 25 7 -0.7952 6.5626 4.0706 26 6 -1.8571 6.0284 3.4354 27 6 -3.1903 6.7299 3.4753 28 8 -1.7397 4.9831 2.8316 29 6 0.8260 5.3542 2.7546 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5137 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 1.8934 -0.5137 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 1.6766 1.9564 0.8900 36 1 1.6765 1.9564 -0.8899 37 1 3.9330 0.9289 -0.8908 38 1 3.9337 0.9287 0.8892 39 1 5.8894 2.4810 -1.0969 40 1 6.0356 2.2734 0.6648 41 1 5.4808 4.9910 0.1315 42 1 9.5420 6.9569 0.0484 43 1 4.3126 3.5647 1.9981 44 1 3.9476 4.3428 3.6192 45 1 3.2983 5.4500 5.7155 46 1 1.0787 6.4858 5.9312 47 1 -0.9058 7.3568 4.6165 48 1 -3.1018 7.6453 4.0603 49 1 -3.5021 6.9757 2.4602 50 1 -3.9315 6.0758 3.9346 51 1 0.1332 5.3282 1.9265 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675234085.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:50 Heat of formation + Delta-G solvation = -45.365252 kcal Electronic energy + Delta-G solvation = -31050.527751 eV Core-core repulsion = 26949.713786 eV Total energy + Delta-G solvation = -4100.813965 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.88039 -39.90885 -38.33045 -36.54588 -35.10775 -34.92410 -33.60268 -31.87154 -31.20539 -31.01570 -30.33611 -28.74299 -27.49396 -24.43545 -23.90549 -23.12440 -21.94599 -21.03705 -20.79179 -20.68328 -20.15555 -18.50536 -17.56608 -17.29623 -16.56084 -16.34567 -15.96775 -15.74308 -15.35344 -14.83188 -14.56531 -14.50111 -14.33544 -14.03968 -13.79532 -13.70265 -13.45207 -13.21868 -13.09392 -12.89723 -12.74535 -12.69397 -12.42792 -12.15492 -12.07379 -12.01837 -11.72218 -11.36920 -11.32168 -10.95425 -10.86918 -10.81458 -10.70314 -10.30757 -10.26854 -10.17152 -10.11213 -9.67999 -9.62219 -9.10203 -8.94742 -8.70499 -8.40464 -7.27707 -5.79791 -3.15739 0.72904 1.14538 2.23167 2.68748 2.97740 3.33994 3.37532 3.42280 3.44298 3.84390 4.33148 4.57005 4.62472 4.69243 4.73142 4.80616 4.95985 4.97541 5.00754 5.10981 5.20480 5.23736 5.29762 5.35635 5.38804 5.44330 5.50139 5.52017 5.71810 5.75686 5.83148 5.92586 5.95638 6.00447 6.04810 6.09149 6.14012 6.18369 6.21387 6.25737 6.28942 6.40213 6.49337 6.59747 6.68877 6.74096 6.88051 7.00461 7.74622 7.76990 7.95881 8.38805 8.44064 9.17921 9.90283 10.09906 11.38404 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007901 B = 0.003780 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3542.821183 B = 7405.853276 C =10027.727674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C -0.113 4.113 4 C -0.126 4.126 5 C 0.134 3.866 6 H 0.089 0.911 7 C 0.149 3.851 8 N -0.755 5.755 9 C -0.245 4.245 10 H 0.091 0.909 11 C 0.007 3.993 12 N -0.933 5.933 13 Si 0.879 3.121 14 H -0.283 1.283 15 H -0.290 1.290 16 H -0.277 1.277 17 N -0.709 5.709 18 C 0.555 3.445 19 O -0.531 6.531 20 C -0.111 4.111 21 C -0.099 4.099 22 C -0.106 4.106 23 C -0.124 4.124 24 C 0.131 3.869 25 N -0.675 5.675 26 C 0.506 3.494 27 C -0.169 4.169 28 O -0.518 6.518 29 C -0.063 4.063 30 H 0.047 0.953 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.043 0.957 40 H 0.033 0.967 41 H 0.363 0.637 42 H 0.260 0.740 43 H 0.402 0.598 44 H 0.132 0.868 45 H 0.134 0.866 46 H 0.128 0.872 47 H 0.411 0.589 48 H 0.078 0.922 49 H 0.100 0.900 50 H 0.098 0.902 51 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.058 -2.022 12.182 26.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.151 4.151 4 C -0.165 4.165 5 C 0.030 3.970 6 H 0.107 0.893 7 C 0.021 3.979 8 N -0.401 5.401 9 C -0.375 4.375 10 H 0.109 0.891 11 C -0.189 4.189 12 N -0.580 5.580 13 Si 0.710 3.290 14 H -0.210 1.210 15 H -0.217 1.217 16 H -0.203 1.203 17 N -0.361 5.361 18 C 0.342 3.658 19 O -0.409 6.409 20 C -0.115 4.115 21 C -0.118 4.118 22 C -0.124 4.124 23 C -0.145 4.145 24 C 0.037 3.963 25 N -0.321 5.321 26 C 0.294 3.706 27 C -0.228 4.228 28 O -0.392 6.392 29 C -0.084 4.084 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.082 0.918 39 H 0.061 0.939 40 H 0.051 0.949 41 H 0.196 0.804 42 H 0.070 0.930 43 H 0.239 0.761 44 H 0.150 0.850 45 H 0.152 0.848 46 H 0.146 0.854 47 H 0.247 0.753 48 H 0.097 0.903 49 H 0.118 0.882 50 H 0.116 0.884 51 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -23.340 -2.828 10.989 25.952 hybrid contribution -0.375 1.652 0.925 1.930 sum -23.715 -1.176 11.914 26.566 Atomic orbital electron populations 1.21744 0.96226 1.00788 1.01973 1.21559 0.95665 0.97625 1.01309 1.21678 0.94635 0.95492 1.03281 1.21972 0.96189 0.95925 1.02397 1.21401 0.96059 0.92913 0.86654 0.89326 1.20952 0.88986 0.88269 0.99661 1.42715 1.05317 1.02611 1.89497 1.19047 0.81944 0.94298 1.42185 0.89099 1.24648 0.95467 0.96885 1.01875 1.69697 1.11366 1.20022 1.56958 0.86617 0.81070 0.83269 0.78082 1.20962 1.21656 1.20321 1.45952 1.15817 1.57009 1.17283 1.18128 0.82056 0.78369 0.87218 1.90773 1.51243 1.59033 1.39811 1.19920 0.95065 1.01812 0.94696 1.21424 0.99174 0.98474 0.92750 1.20904 0.95915 0.97665 0.97949 1.21036 0.94583 1.01812 0.97075 1.17601 0.85602 0.99146 0.93951 1.43671 1.06372 1.30957 1.51101 1.21076 0.86089 0.85271 0.78187 1.21853 0.93926 1.01531 1.05498 1.90818 1.84768 1.22341 1.41278 1.21203 0.95196 0.95455 0.96555 0.93343 0.92891 0.92825 0.92424 0.92613 0.91734 0.91558 0.90913 0.91786 0.93944 0.94867 0.80401 0.93030 0.76149 0.85033 0.84801 0.85367 0.75260 0.90340 0.88174 0.88368 0.83505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.91 37.16 0.37 -1.40 16 2 C -0.12 -1.50 5.93 -26.73 -0.16 -1.66 16 3 C -0.11 -1.62 3.82 -26.73 -0.10 -1.72 16 4 C -0.13 -1.72 4.89 -26.73 -0.13 -1.85 16 5 C 0.13 2.18 2.41 -67.93 -0.16 2.02 16 6 H 0.09 1.62 7.58 -51.93 -0.39 1.23 16 7 C 0.15 2.77 5.82 -4.04 -0.02 2.75 16 8 N -0.76 -17.64 5.24 -59.91 -0.31 -17.95 16 9 C -0.24 -6.83 10.47 -15.06 -0.16 -6.99 16 10 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 11 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 12 N -0.93 -29.13 13.97 55.49 0.78 -28.35 16 13 Si 0.88 22.32 27.74 -169.99 -4.71 17.60 16 14 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 15 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 16 H -0.28 -6.90 6.52 56.52 0.37 -6.53 16 17 N -0.71 -11.16 4.42 -54.74 -0.24 -11.41 16 18 C 0.56 9.39 6.34 -12.32 -0.08 9.32 16 19 O -0.53 -10.33 13.48 5.32 0.07 -10.25 16 20 C -0.11 -1.67 5.87 -104.99 -0.62 -2.28 16 21 C -0.10 -1.23 9.54 -39.16 -0.37 -1.61 16 22 C -0.11 -1.08 10.02 -39.67 -0.40 -1.48 16 23 C -0.12 -1.18 9.95 -39.31 -0.39 -1.58 16 24 C 0.13 1.50 6.27 -83.74 -0.53 0.97 16 25 N -0.67 -5.64 5.34 -9.89 -0.05 -5.69 16 26 C 0.51 4.94 7.68 -10.98 -0.08 4.85 16 27 C -0.17 -0.81 10.39 36.01 0.37 -0.44 16 28 O -0.52 -7.75 14.79 5.55 0.08 -7.66 16 29 C -0.06 -0.94 8.20 -38.98 -0.32 -1.26 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 1.04 5.64 -51.93 -0.29 0.75 16 36 H 0.07 1.05 7.85 -51.93 -0.41 0.64 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.36 8.55 5.20 -40.82 -0.21 8.34 16 42 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 43 H 0.40 5.84 6.63 -40.82 -0.27 5.57 16 44 H 0.13 1.48 6.40 -52.49 -0.34 1.15 16 45 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 46 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 47 H 0.41 1.77 8.66 -40.82 -0.35 1.42 16 48 H 0.08 0.15 7.92 -51.93 -0.41 -0.26 16 49 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 51 H 0.15 2.50 6.00 -52.48 -0.32 2.19 16 LS Contribution 412.65 15.07 6.22 6.22 Total: -1.00 -36.67 412.65 -9.13 -45.80 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: -8.08 Total: 13.94 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: -2.88 Total: -2.24 kcal Atomic # 7 Polarization: -63.57 SS G_CDS: 0.17 Total: -63.40 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: 0.15 Total: -17.92 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.71 Total: 17.60 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -36.67 -9.13 -45.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675234085.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.437 kcal (2) G-P(sol) polarization free energy of solvation -36.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds