Wall clock time and date at job start Wed Apr 1 2020 05:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47403 * 2 1 4 4 C 1.53002 * 109.46926 * 120.00574 * 2 1 3 5 5 N 1.46504 * 109.46721 * 174.99802 * 4 2 1 6 6 C 1.35425 * 119.47345 * 89.99788 * 5 4 2 7 7 C 1.35760 * 121.23242 * 179.69567 * 6 5 4 8 8 C 1.39473 * 120.13050 * 0.27849 * 7 6 5 9 9 C 1.39339 * 118.95575 * 359.97438 * 8 7 6 10 10 C 1.47086 * 120.58328 * 179.97438 * 9 8 7 11 11 O 1.21642 * 119.99976 * 354.15090 * 10 9 8 12 12 N 1.34776 * 119.99585 * 174.14463 * 10 9 8 13 13 C 1.46499 * 119.99832 * 185.10414 * 12 10 9 14 14 C 1.52994 * 109.47418 * 179.97438 * 13 12 10 15 15 H 1.09000 * 109.46951 * 64.99333 * 14 13 12 16 16 N 1.46499 * 109.46987 * 304.99785 * 14 13 12 17 17 C 1.36943 * 119.99972 * 154.99924 * 16 14 13 18 18 H 1.07996 * 119.99814 * 359.97438 * 17 16 14 19 19 C 1.38814 * 119.99760 * 179.97438 * 17 16 14 20 20 N 1.31624 * 119.99942 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 119.99764 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47327 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47095 * 120.00274 * 21 19 17 24 24 H 1.48500 * 109.47207 * 239.99791 * 21 19 17 25 25 C 1.52997 * 109.47603 * 184.99364 * 14 13 12 26 26 C 1.52997 * 117.50443 * 248.74695 * 25 14 13 27 27 C 1.52999 * 117.50371 * 180.08600 * 25 14 13 28 28 C 1.34652 * 119.46998 * 270.25405 * 5 4 2 29 29 O 1.21887 * 120.10444 * 0.02562 * 28 5 4 30 30 H 1.09001 * 109.46500 * 300.00197 * 1 2 3 31 31 H 1.09001 * 109.47391 * 59.99418 * 1 2 3 32 32 H 1.08997 * 109.47797 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46500 * 239.99803 * 2 1 3 34 34 H 1.09005 * 109.47326 * 180.02562 * 3 2 1 35 35 H 1.08999 * 109.47028 * 300.00173 * 3 2 1 36 36 H 1.09001 * 109.47454 * 60.00387 * 3 2 1 37 37 H 1.09000 * 109.47555 * 54.99577 * 4 2 1 38 38 H 1.09004 * 109.46533 * 294.99131 * 4 2 1 39 39 H 1.08003 * 119.38491 * 359.97401 * 6 5 4 40 40 H 1.08000 * 119.93333 * 180.25188 * 7 6 5 41 41 H 1.07996 * 120.52127 * 180.02562 * 8 7 6 42 42 H 0.96999 * 120.00405 * 5.09834 * 12 10 9 43 43 H 1.09007 * 109.47017 * 300.00038 * 13 12 10 44 44 H 1.09001 * 109.47442 * 59.99364 * 13 12 10 45 45 H 0.97001 * 120.00099 * 334.99489 * 16 14 13 46 46 H 0.96996 * 119.99380 * 179.97438 * 20 19 17 47 47 H 1.09005 * 115.54872 * 34.41671 * 25 14 13 48 48 H 1.09005 * 117.49636 * 359.97438 * 26 25 14 49 49 H 1.09004 * 117.49833 * 145.01294 * 26 25 14 50 50 H 1.09004 * 117.50039 * 214.98293 * 27 25 14 51 51 H 1.08998 * 117.49318 * 359.97438 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 3.5000 -0.8265 1.1904 6 6 4.2610 0.1599 1.7214 7 6 5.6168 0.0961 1.6921 8 6 6.2538 -0.9959 1.1030 9 6 5.4773 -2.0121 0.5501 10 6 6.1116 -3.1798 -0.0806 11 8 7.3197 -3.2152 -0.2183 12 7 5.3542 -4.2103 -0.5058 13 6 5.9919 -5.4200 -1.0313 14 6 4.9155 -6.4274 -1.4404 15 1 4.3361 -6.0230 -2.2704 16 7 4.0276 -6.6821 -0.3033 17 6 2.7445 -7.1092 -0.5188 18 1 2.3870 -7.2579 -1.5270 19 6 1.9033 -7.3510 0.5587 20 7 2.3389 -7.1692 1.7874 21 14 0.1529 -7.9329 0.2648 22 1 -0.0887 -8.0580 -1.1951 23 1 -0.0451 -9.2538 0.9137 24 1 -0.7990 -6.9502 0.8421 25 6 5.5796 -7.7364 -1.8721 26 6 5.5014 -8.1136 -3.3528 27 6 4.6654 -8.8774 -2.3229 28 6 4.0639 -1.9000 0.6048 29 8 3.3623 -2.7752 0.1279 30 1 -0.3632 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8932 -0.5139 -0.8900 34 1 3.1301 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6768 1.9563 0.8900 37 1 1.6053 -1.7199 1.2951 38 1 1.7517 -0.1584 2.1369 39 1 3.7804 1.0111 2.1806 40 1 6.2033 0.8928 2.1254 41 1 7.3319 -1.0533 1.0766 42 1 4.3869 -4.1511 -0.4638 43 1 6.5985 -5.1630 -1.8998 44 1 6.6268 -5.8596 -0.2620 45 1 4.3486 -6.5482 0.6022 46 1 1.7510 -7.3378 2.5402 47 1 6.4883 -8.0029 -1.3322 48 1 4.9764 -7.4294 -4.0194 49 1 6.3584 -8.6285 -3.7869 50 1 4.9727 -9.8946 -2.0799 51 1 3.5907 -8.6956 -2.3115 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690171663.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:35 Heat of formation + Delta-G solvation = -3.060821 kcal Electronic energy + Delta-G solvation = -31641.862972 eV Core-core repulsion = 27542.883465 eV Total energy + Delta-G solvation = -4098.979507 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.62864 -39.01297 -37.40890 -37.16038 -36.41946 -34.37549 -33.41776 -33.12945 -30.82997 -30.11010 -27.93407 -27.52497 -27.13971 -24.90566 -23.34745 -22.86707 -22.11574 -21.59537 -20.65008 -20.25274 -19.49490 -17.91339 -17.47554 -17.17853 -16.75726 -16.04022 -15.84470 -15.19965 -15.01699 -15.00013 -14.62987 -14.49611 -14.28675 -13.96853 -13.82565 -13.39877 -13.27391 -13.08470 -12.90477 -12.66505 -12.51748 -12.42065 -12.18380 -11.98444 -11.91890 -11.57643 -11.25099 -11.24410 -11.03750 -11.01077 -10.79245 -10.75551 -10.58304 -10.03980 -10.00156 -9.87055 -9.81126 -9.60071 -9.35978 -9.17137 -8.84628 -8.35867 -7.99294 -6.88204 -5.67218 -2.94874 0.42403 1.79521 2.42927 3.03168 3.46632 3.52419 3.54137 3.82521 3.99617 4.28180 4.35293 4.48752 4.52626 4.65665 4.70651 4.71882 4.89496 5.00091 5.10249 5.23149 5.25510 5.31412 5.39771 5.47886 5.51049 5.57998 5.61279 5.64026 5.73579 5.75052 5.80628 5.87624 5.91453 5.96289 6.03229 6.03772 6.09832 6.19198 6.21145 6.29684 6.35629 6.57882 6.65680 6.74900 6.88718 6.91399 7.09261 7.22525 7.77958 7.93442 8.40067 8.49423 8.94850 9.61558 10.17520 10.53715 11.55274 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008724 B = 0.003931 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3208.614943 B = 7121.349708 C = 9246.238814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.112 4.112 3 C -0.153 4.153 4 C 0.089 3.911 5 N -0.488 5.488 6 C 0.158 3.842 7 C -0.247 4.247 8 C 0.050 3.950 9 C -0.264 4.264 10 C 0.569 3.431 11 O -0.569 6.569 12 N -0.698 5.698 13 C 0.117 3.883 14 C 0.194 3.806 15 H 0.053 0.947 16 N -0.713 5.713 17 C -0.227 4.227 18 H 0.070 0.930 19 C -0.011 4.011 20 N -0.929 5.929 21 Si 0.901 3.099 22 H -0.281 1.281 23 H -0.294 1.294 24 H -0.294 1.294 25 C -0.157 4.157 26 C -0.197 4.197 27 C -0.156 4.156 28 C 0.523 3.477 29 O -0.512 6.512 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.082 0.918 34 H 0.054 0.946 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.110 0.890 38 H 0.092 0.908 39 H 0.163 0.837 40 H 0.150 0.850 41 H 0.147 0.853 42 H 0.426 0.574 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.385 0.615 46 H 0.252 0.748 47 H 0.090 0.910 48 H 0.086 0.914 49 H 0.080 0.920 50 H 0.079 0.921 51 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.199 19.849 -0.850 19.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.131 4.131 3 C -0.210 4.210 4 C -0.032 4.032 5 N -0.196 5.196 6 C 0.028 3.972 7 C -0.270 4.270 8 C 0.027 3.973 9 C -0.271 4.271 10 C 0.356 3.644 11 O -0.452 6.452 12 N -0.358 5.358 13 C -0.008 4.008 14 C 0.083 3.917 15 H 0.071 0.929 16 N -0.353 5.353 17 C -0.358 4.358 18 H 0.088 0.912 19 C -0.207 4.207 20 N -0.578 5.578 21 Si 0.733 3.267 22 H -0.207 1.207 23 H -0.221 1.221 24 H -0.221 1.221 25 C -0.179 4.179 26 C -0.235 4.235 27 C -0.193 4.193 28 C 0.323 3.677 29 O -0.391 6.391 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.100 0.900 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.128 0.872 38 H 0.110 0.890 39 H 0.180 0.820 40 H 0.168 0.832 41 H 0.164 0.836 42 H 0.274 0.726 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.219 0.781 46 H 0.062 0.938 47 H 0.108 0.892 48 H 0.104 0.896 49 H 0.099 0.901 50 H 0.097 0.903 51 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 2.238 19.135 -1.316 19.311 hybrid contribution -1.210 -0.295 0.412 1.312 sum 1.027 18.841 -0.904 18.891 Atomic orbital electron populations 1.21752 0.93583 1.02840 1.02037 1.21455 0.96942 0.96282 0.98438 1.21968 1.01054 0.95699 1.02302 1.22254 0.77042 1.04661 0.99208 1.45485 1.09058 1.18355 1.46704 1.22136 0.92586 0.91023 0.91440 1.20604 0.92916 1.02465 1.11000 1.21951 1.01322 0.88858 0.85172 1.21122 0.92244 1.00709 1.13070 1.17424 0.86236 0.82300 0.78440 1.90721 1.13979 1.81400 1.59054 1.46563 1.13441 1.14584 1.61244 1.21580 0.95745 0.85094 0.98412 1.20021 0.89814 0.89760 0.92068 0.92906 1.42389 1.10025 1.79737 1.03188 1.19186 0.87972 1.36266 0.92362 0.91249 1.24670 0.98008 1.02716 0.95278 1.69686 1.35389 1.55576 0.97132 0.86206 0.85488 0.77899 0.77153 1.20653 1.22097 1.22121 1.23040 1.00731 0.99197 0.94944 1.22957 1.02853 1.04948 0.92695 1.22775 0.99191 0.95485 1.01898 1.17135 0.88944 0.81517 0.80066 1.90795 1.63252 1.37654 1.47376 0.92462 0.92070 0.91708 0.89975 0.92651 0.92075 0.92384 0.87179 0.88993 0.81994 0.83195 0.83555 0.72579 0.91852 0.92074 0.78103 0.93845 0.89155 0.89598 0.90128 0.90267 0.87737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.19 37.16 0.34 -0.83 16 2 C -0.11 -1.01 3.12 -90.62 -0.28 -1.30 16 3 C -0.15 -1.01 8.63 37.16 0.32 -0.69 16 4 C 0.09 0.89 4.83 -4.04 -0.02 0.87 16 5 N -0.49 -5.60 2.46 -119.34 -0.29 -5.89 16 6 C 0.16 1.23 8.20 -16.85 -0.14 1.09 16 7 C -0.25 -2.01 9.99 -40.01 -0.40 -2.41 16 8 C 0.05 0.61 9.70 -38.71 -0.38 0.23 16 9 C -0.26 -4.35 5.92 -104.50 -0.62 -4.97 16 10 C 0.57 11.35 7.73 -12.67 -0.10 11.26 16 11 O -0.57 -12.13 16.41 5.24 0.09 -12.04 16 12 N -0.70 -14.62 5.30 -61.49 -0.33 -14.95 16 13 C 0.12 2.34 5.22 -4.05 -0.02 2.31 16 14 C 0.19 4.10 2.70 -67.94 -0.18 3.92 16 15 H 0.05 1.15 7.84 -51.93 -0.41 0.75 16 16 N -0.71 -18.11 4.54 -53.43 -0.24 -18.35 16 17 C -0.23 -6.25 8.63 -15.06 -0.13 -6.38 16 18 H 0.07 1.88 6.91 -52.49 -0.36 1.51 16 19 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 20 N -0.93 -28.37 13.06 55.49 0.72 -27.64 16 21 Si 0.90 22.71 29.55 -169.99 -5.02 17.68 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.29 -7.47 7.11 56.52 0.40 -7.06 16 24 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 25 C -0.16 -3.00 5.36 -90.62 -0.49 -3.49 16 26 C -0.20 -3.25 10.18 -26.70 -0.27 -3.52 16 27 C -0.16 -2.97 9.78 -26.70 -0.26 -3.24 16 28 C 0.52 8.59 7.44 -14.92 -0.11 8.48 16 29 O -0.51 -10.47 13.27 5.02 0.07 -10.41 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.05 0.38 6.34 -51.93 -0.33 0.05 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.11 1.43 7.39 -51.93 -0.38 1.05 16 38 H 0.09 0.61 8.00 -51.93 -0.42 0.19 16 39 H 0.16 0.57 7.88 -52.48 -0.41 0.15 16 40 H 0.15 0.70 8.06 -52.49 -0.42 0.28 16 41 H 0.15 1.66 7.71 -52.49 -0.40 1.26 16 42 H 0.43 9.65 4.75 -40.82 -0.19 9.46 16 43 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 44 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 45 H 0.38 10.70 7.80 -40.82 -0.32 10.39 16 46 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 47 H 0.09 1.67 8.11 -51.93 -0.42 1.25 16 48 H 0.09 1.38 8.05 -51.93 -0.42 0.97 16 49 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 50 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 51 H 0.10 2.22 6.23 -51.93 -0.32 1.90 16 LS Contribution 412.80 15.07 6.22 6.22 Total: -1.00 -35.03 412.80 -9.79 -44.83 By element: Atomic # 1 Polarization: 27.80 SS G_CDS: -8.18 Total: 19.62 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: -2.83 Total: 0.93 kcal Atomic # 7 Polarization: -66.70 SS G_CDS: -0.14 Total: -66.83 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: 0.15 Total: -22.45 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -35.03 -9.79 -44.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690171663.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.767 kcal (2) G-P(sol) polarization free energy of solvation -35.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds