Wall clock time and date at job start Wed Apr 1 2020 05:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47403 * 2 1 4 4 C 1.53002 * 109.46926 * 120.00574 * 2 1 3 5 5 N 1.46504 * 109.46721 * 174.99802 * 4 2 1 6 6 C 1.35425 * 119.47345 * 89.99788 * 5 4 2 7 7 C 1.35760 * 121.23242 * 179.69567 * 6 5 4 8 8 C 1.39473 * 120.13050 * 0.27849 * 7 6 5 9 9 C 1.39339 * 118.95575 * 359.97438 * 8 7 6 10 10 C 1.47086 * 120.58328 * 179.97438 * 9 8 7 11 11 O 1.21642 * 119.99976 * 354.15090 * 10 9 8 12 12 N 1.34776 * 119.99585 * 174.14463 * 10 9 8 13 13 C 1.46499 * 119.99832 * 185.10414 * 12 10 9 14 14 C 1.52994 * 109.47418 * 179.97438 * 13 12 10 15 15 H 1.09000 * 109.46951 * 64.99333 * 14 13 12 16 16 N 1.46499 * 109.46987 * 304.99785 * 14 13 12 17 17 C 1.36943 * 119.99972 * 154.99924 * 16 14 13 18 18 H 1.07996 * 119.99814 * 359.97438 * 17 16 14 19 19 C 1.38814 * 119.99760 * 179.97438 * 17 16 14 20 20 N 1.31624 * 119.99942 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 119.99764 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47327 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47095 * 120.00274 * 21 19 17 24 24 H 1.48500 * 109.47207 * 239.99791 * 21 19 17 25 25 C 1.52997 * 109.47603 * 184.99364 * 14 13 12 26 26 C 1.52997 * 117.50443 * 248.74695 * 25 14 13 27 27 C 1.52999 * 117.50371 * 180.08600 * 25 14 13 28 28 C 1.34652 * 119.46998 * 270.25405 * 5 4 2 29 29 O 1.21887 * 120.10444 * 0.02562 * 28 5 4 30 30 H 1.09001 * 109.46500 * 300.00197 * 1 2 3 31 31 H 1.09001 * 109.47391 * 59.99418 * 1 2 3 32 32 H 1.08997 * 109.47797 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46500 * 239.99803 * 2 1 3 34 34 H 1.09005 * 109.47326 * 180.02562 * 3 2 1 35 35 H 1.08999 * 109.47028 * 300.00173 * 3 2 1 36 36 H 1.09001 * 109.47454 * 60.00387 * 3 2 1 37 37 H 1.09000 * 109.47555 * 54.99577 * 4 2 1 38 38 H 1.09004 * 109.46533 * 294.99131 * 4 2 1 39 39 H 1.08003 * 119.38491 * 359.97401 * 6 5 4 40 40 H 1.08000 * 119.93333 * 180.25188 * 7 6 5 41 41 H 1.07996 * 120.52127 * 180.02562 * 8 7 6 42 42 H 0.96999 * 120.00405 * 5.09834 * 12 10 9 43 43 H 1.09007 * 109.47017 * 300.00038 * 13 12 10 44 44 H 1.09001 * 109.47442 * 59.99364 * 13 12 10 45 45 H 0.97001 * 120.00099 * 334.99489 * 16 14 13 46 46 H 0.96996 * 119.99380 * 179.97438 * 20 19 17 47 47 H 1.09005 * 115.54872 * 34.41671 * 25 14 13 48 48 H 1.09005 * 117.49636 * 359.97438 * 26 25 14 49 49 H 1.09004 * 117.49833 * 145.01294 * 26 25 14 50 50 H 1.09004 * 117.50039 * 214.98293 * 27 25 14 51 51 H 1.08998 * 117.49318 * 359.97438 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 3.5000 -0.8265 1.1904 6 6 4.2610 0.1599 1.7214 7 6 5.6168 0.0961 1.6921 8 6 6.2538 -0.9959 1.1030 9 6 5.4773 -2.0121 0.5501 10 6 6.1116 -3.1798 -0.0806 11 8 7.3197 -3.2152 -0.2183 12 7 5.3542 -4.2103 -0.5058 13 6 5.9919 -5.4200 -1.0313 14 6 4.9155 -6.4274 -1.4404 15 1 4.3361 -6.0230 -2.2704 16 7 4.0276 -6.6821 -0.3033 17 6 2.7445 -7.1092 -0.5188 18 1 2.3870 -7.2579 -1.5270 19 6 1.9033 -7.3510 0.5587 20 7 2.3389 -7.1692 1.7874 21 14 0.1529 -7.9329 0.2648 22 1 -0.0887 -8.0580 -1.1951 23 1 -0.0451 -9.2538 0.9137 24 1 -0.7990 -6.9502 0.8421 25 6 5.5796 -7.7364 -1.8721 26 6 5.5014 -8.1136 -3.3528 27 6 4.6654 -8.8774 -2.3229 28 6 4.0639 -1.9000 0.6048 29 8 3.3623 -2.7752 0.1279 30 1 -0.3632 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8932 -0.5139 -0.8900 34 1 3.1301 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6768 1.9563 0.8900 37 1 1.6053 -1.7199 1.2951 38 1 1.7517 -0.1584 2.1369 39 1 3.7804 1.0111 2.1806 40 1 6.2033 0.8928 2.1254 41 1 7.3319 -1.0533 1.0766 42 1 4.3869 -4.1511 -0.4638 43 1 6.5985 -5.1630 -1.8998 44 1 6.6268 -5.8596 -0.2620 45 1 4.3486 -6.5482 0.6022 46 1 1.7510 -7.3378 2.5402 47 1 6.4883 -8.0029 -1.3322 48 1 4.9764 -7.4294 -4.0194 49 1 6.3584 -8.6285 -3.7869 50 1 4.9727 -9.8946 -2.0799 51 1 3.5907 -8.6956 -2.3115 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690171663.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:34 Heat of formation + Delta-G solvation = -26.681770 kcal Electronic energy + Delta-G solvation = -31642.887253 eV Core-core repulsion = 27542.883465 eV Total energy + Delta-G solvation = -4100.003788 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.65847 -40.47199 -39.01368 -38.33066 -37.25244 -36.01941 -35.06239 -34.33133 -32.69767 -31.23595 -29.65416 -28.19141 -27.93827 -26.25646 -25.20771 -23.88267 -23.58343 -23.04911 -21.84558 -21.30806 -21.07595 -19.46084 -18.82121 -18.49079 -17.92672 -17.09559 -16.92790 -16.88026 -16.60647 -16.13254 -16.03416 -15.77373 -15.50547 -15.34622 -15.23631 -14.91270 -14.77230 -14.51113 -13.90884 -13.72895 -13.50163 -13.38122 -13.15082 -13.07855 -13.01425 -12.94745 -12.76265 -12.72315 -12.44238 -12.31231 -12.25656 -11.99477 -11.94437 -11.75967 -11.72005 -11.25581 -11.03264 -11.00071 -10.99060 -10.86294 -10.77457 -9.94529 -9.04425 -9.00270 -7.89259 -5.16677 -0.52792 0.84074 1.42991 1.43941 1.50042 1.53248 1.75971 2.45779 2.56190 2.76152 3.05214 3.46222 3.49489 3.68797 3.76041 3.78719 3.86230 3.94020 3.96145 4.00122 4.12865 4.15709 4.24276 4.29285 4.34209 4.36608 4.54952 4.58563 4.62710 4.68054 4.77781 4.79921 4.85597 4.86581 4.94392 4.97648 4.99326 5.11698 5.14797 5.19841 5.24092 5.34816 5.36800 5.37356 5.43503 5.53593 5.57171 5.65570 5.94394 6.29587 6.66410 6.96872 7.36587 7.37325 8.07432 8.34216 9.34605 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008724 B = 0.003931 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3208.614943 B = 7121.349708 C = 9246.238814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.109 4.109 3 C -0.146 4.146 4 C 0.087 3.913 5 N -0.482 5.482 6 C 0.182 3.818 7 C -0.240 4.240 8 C 0.076 3.924 9 C -0.329 4.329 10 C 0.562 3.438 11 O -0.596 6.596 12 N -0.712 5.712 13 C 0.123 3.877 14 C 0.198 3.802 15 H 0.043 0.957 16 N -0.721 5.721 17 C -0.216 4.216 18 H 0.072 0.928 19 C -0.073 4.073 20 N -0.968 5.968 21 Si 0.963 3.037 22 H -0.268 1.268 23 H -0.294 1.294 24 H -0.297 1.297 25 C -0.173 4.173 26 C -0.160 4.160 27 C -0.170 4.170 28 C 0.512 3.488 29 O -0.574 6.574 30 H 0.083 0.917 31 H 0.066 0.934 32 H 0.037 0.963 33 H 0.039 0.961 34 H 0.056 0.944 35 H 0.061 0.939 36 H 0.090 0.910 37 H 0.067 0.933 38 H 0.142 0.858 39 H 0.226 0.774 40 H 0.203 0.797 41 H 0.152 0.848 42 H 0.417 0.583 43 H 0.076 0.924 44 H 0.051 0.949 45 H 0.370 0.630 46 H 0.246 0.754 47 H 0.098 0.902 48 H 0.091 0.909 49 H 0.113 0.887 50 H 0.092 0.908 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.325 23.437 -0.286 23.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.128 4.128 3 C -0.203 4.203 4 C -0.034 4.034 5 N -0.188 5.188 6 C 0.052 3.948 7 C -0.262 4.262 8 C 0.053 3.947 9 C -0.336 4.336 10 C 0.352 3.648 11 O -0.482 6.482 12 N -0.372 5.372 13 C -0.002 4.002 14 C 0.089 3.911 15 H 0.061 0.939 16 N -0.359 5.359 17 C -0.348 4.348 18 H 0.090 0.910 19 C -0.265 4.265 20 N -0.619 5.619 21 Si 0.794 3.206 22 H -0.192 1.192 23 H -0.221 1.221 24 H -0.225 1.225 25 C -0.195 4.195 26 C -0.198 4.198 27 C -0.207 4.207 28 C 0.315 3.685 29 O -0.459 6.459 30 H 0.102 0.898 31 H 0.085 0.915 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.109 0.891 37 H 0.085 0.915 38 H 0.160 0.840 39 H 0.243 0.757 40 H 0.220 0.780 41 H 0.170 0.830 42 H 0.264 0.736 43 H 0.094 0.906 44 H 0.069 0.931 45 H 0.201 0.799 46 H 0.055 0.945 47 H 0.116 0.884 48 H 0.109 0.891 49 H 0.131 0.869 50 H 0.110 0.890 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.383 22.761 -0.793 22.900 hybrid contribution -1.197 -1.185 0.257 1.704 sum 1.186 21.576 -0.535 21.615 Atomic orbital electron populations 1.21742 0.92935 1.01648 1.03647 1.21397 0.97472 0.97791 0.96147 1.21941 1.01030 0.93347 1.04024 1.22432 0.75895 1.03288 1.01749 1.45526 1.10145 1.17803 1.45316 1.23266 0.92756 0.90577 0.88201 1.21191 0.93423 1.01920 1.09650 1.22301 1.01587 0.88309 0.82543 1.20852 0.92799 1.01807 1.18127 1.18033 0.86059 0.82956 0.77768 1.90663 1.14766 1.82248 1.60477 1.46723 1.13162 1.15227 1.62087 1.21498 0.95251 0.84929 0.98479 1.20088 0.89491 0.91198 0.90276 0.93900 1.42470 1.10168 1.79757 1.03544 1.19467 0.88811 1.34212 0.92317 0.90971 1.25413 1.01811 1.04142 0.95160 1.69851 1.36522 1.57737 0.97808 0.85205 0.80944 0.76926 0.77558 1.19238 1.22134 1.22489 1.22869 1.00984 0.97822 0.97783 1.23035 1.02632 1.03228 0.90890 1.22734 0.97830 0.96143 1.04040 1.17226 0.88892 0.82200 0.80156 1.90737 1.64325 1.40229 1.50578 0.89786 0.91450 0.94356 0.94231 0.92540 0.92023 0.89081 0.91479 0.84028 0.75713 0.78042 0.83004 0.73578 0.90578 0.93051 0.79886 0.94487 0.88432 0.89075 0.86925 0.88992 0.90410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 9.19 71.98 0.66 -1.53 16 2 C -0.11 -1.88 3.12 -10.79 -0.03 -1.92 16 3 C -0.15 -1.38 8.63 71.98 0.62 -0.75 16 4 C 0.09 1.64 4.83 86.38 0.42 2.05 16 5 N -0.48 -10.45 2.46 -649.68 -1.60 -12.05 16 6 C 0.18 1.93 8.20 83.56 0.69 2.61 16 7 C -0.24 -2.76 9.99 21.99 0.22 -2.54 16 8 C 0.08 1.74 9.70 22.83 0.22 1.97 16 9 C -0.33 -11.32 5.92 -19.79 -0.12 -11.44 16 10 C 0.56 24.07 7.73 86.56 0.67 24.74 16 11 O -0.60 -26.81 16.41 -4.16 -0.07 -26.88 16 12 N -0.71 -32.47 5.30 -466.70 -2.47 -34.95 16 13 C 0.12 5.27 5.22 86.38 0.45 5.72 16 14 C 0.20 8.83 2.70 44.99 0.12 8.95 16 15 H 0.04 1.98 7.84 -2.39 -0.02 1.96 16 16 N -0.72 -38.84 4.54 -322.95 -1.47 -40.31 16 17 C -0.22 -12.48 8.63 84.03 0.73 -11.76 16 18 H 0.07 4.05 6.91 -2.91 -0.02 4.03 16 19 C -0.07 -4.40 5.50 84.86 0.47 -3.94 16 20 N -0.97 -62.01 13.06 21.65 0.28 -61.73 16 21 Si 0.96 48.46 29.55 68.60 2.03 50.49 16 22 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 23 H -0.29 -14.69 7.11 99.48 0.71 -13.99 16 24 H -0.30 -15.00 7.11 99.48 0.71 -14.29 16 25 C -0.17 -6.69 5.36 -10.80 -0.06 -6.75 16 26 C -0.16 -5.06 10.18 30.62 0.31 -4.75 16 27 C -0.17 -6.47 9.78 30.62 0.30 -6.17 16 28 C 0.51 17.79 7.44 85.16 0.63 18.43 16 29 O -0.57 -26.03 13.27 -4.95 -0.07 -26.10 16 30 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.06 0.52 6.34 -2.38 -0.02 0.50 16 35 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 37 H 0.07 1.89 7.39 -2.39 -0.02 1.88 16 38 H 0.14 1.24 8.00 -2.38 -0.02 1.22 16 39 H 0.23 -0.36 7.88 -2.91 -0.02 -0.38 16 40 H 0.20 0.37 8.06 -2.91 -0.02 0.35 16 41 H 0.15 3.24 7.71 -2.91 -0.02 3.22 16 42 H 0.42 20.84 4.75 -92.76 -0.44 20.40 16 43 H 0.08 2.99 8.14 -2.38 -0.02 2.97 16 44 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 45 H 0.37 22.03 7.80 -92.71 -0.72 21.31 16 46 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 47 H 0.10 3.63 8.11 -2.38 -0.02 3.61 16 48 H 0.09 2.81 8.05 -2.38 -0.02 2.79 16 49 H 0.11 2.90 8.14 -2.39 -0.02 2.88 16 50 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 51 H 0.08 3.38 6.23 -2.39 -0.01 3.37 16 Total: -1.00 -87.10 412.80 2.71 -84.38 By element: Atomic # 1 Polarization: 54.43 SS G_CDS: -0.22 Total: 54.21 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: 6.30 Total: 12.93 kcal Atomic # 7 Polarization: -143.78 SS G_CDS: -5.26 Total: -149.04 kcal Atomic # 8 Polarization: -52.84 SS G_CDS: -0.13 Total: -52.97 kcal Atomic # 14 Polarization: 48.46 SS G_CDS: 2.03 Total: 50.49 kcal Total: -87.10 2.71 -84.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690171663.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.702 kcal (2) G-P(sol) polarization free energy of solvation -87.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds