Wall clock time and date at job start Wed Apr 1 2020 05:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.46953 * 2 1 4 4 C 1.53000 * 109.46634 * 119.99865 * 2 1 3 5 5 N 1.46495 * 109.47248 * 65.00129 * 4 2 1 6 6 C 1.35434 * 119.47334 * 90.00147 * 5 4 2 7 7 C 1.35751 * 121.23221 * 179.70102 * 6 5 4 8 8 C 1.39473 * 120.13267 * 0.27344 * 7 6 5 9 9 C 1.39339 * 118.95587 * 359.97438 * 8 7 6 10 10 C 1.47086 * 120.58340 * 179.97438 * 9 8 7 11 11 O 1.21643 * 119.99992 * 354.15479 * 10 9 8 12 12 N 1.34776 * 119.99554 * 174.14946 * 10 9 8 13 13 C 1.46499 * 119.99832 * 185.10862 * 12 10 9 14 14 C 1.52994 * 109.47418 * 179.97438 * 13 12 10 15 15 H 1.08997 * 109.47014 * 294.99903 * 14 13 12 16 16 N 1.46500 * 109.46959 * 54.99368 * 14 13 12 17 17 C 1.36940 * 119.99981 * 204.99823 * 16 14 13 18 18 H 1.08000 * 119.99927 * 0.02562 * 17 16 14 19 19 C 1.38813 * 119.99870 * 179.97438 * 17 16 14 20 20 N 1.31619 * 120.00170 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99793 * 180.02562 * 19 17 16 22 22 H 1.48507 * 109.47032 * 90.00380 * 21 19 17 23 23 H 1.48505 * 109.47190 * 210.00418 * 21 19 17 24 24 H 1.48497 * 109.47645 * 330.00532 * 21 19 17 25 25 C 1.52996 * 109.47546 * 174.99273 * 14 13 12 26 26 C 1.52997 * 117.50417 * 248.75060 * 25 14 13 27 27 C 1.53003 * 117.50197 * 180.08378 * 25 14 13 28 28 C 1.34652 * 119.47204 * 270.25829 * 5 4 2 29 29 O 1.21886 * 120.10453 * 0.02562 * 28 5 4 30 30 H 1.09001 * 109.47340 * 300.00407 * 1 2 3 31 31 H 1.09003 * 109.46860 * 60.00049 * 1 2 3 32 32 H 1.08997 * 109.47107 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47358 * 239.99958 * 2 1 3 34 34 H 1.09006 * 109.47033 * 179.97438 * 3 2 1 35 35 H 1.08994 * 109.47467 * 299.99690 * 3 2 1 36 36 H 1.09006 * 109.47334 * 60.00128 * 3 2 1 37 37 H 1.09004 * 109.47481 * 304.99730 * 4 2 1 38 38 H 1.09000 * 109.46842 * 185.00149 * 4 2 1 39 39 H 1.08003 * 119.37758 * 359.96981 * 6 5 4 40 40 H 1.08008 * 119.93371 * 180.25158 * 7 6 5 41 41 H 1.07996 * 120.52127 * 180.02562 * 8 7 6 42 42 H 0.96999 * 120.00405 * 5.10283 * 12 10 9 43 43 H 1.09007 * 109.47017 * 300.00038 * 13 12 10 44 44 H 1.09001 * 109.47442 * 59.99364 * 13 12 10 45 45 H 0.97000 * 120.00287 * 25.00547 * 16 14 13 46 46 H 0.97003 * 119.99826 * 179.97438 * 20 19 17 47 47 H 1.09005 * 115.54904 * 34.41830 * 25 14 13 48 48 H 1.09003 * 117.49821 * 359.97438 * 26 25 14 49 49 H 1.09000 * 117.50103 * 145.01947 * 26 25 14 50 50 H 1.09002 * 117.49722 * 214.98197 * 27 25 14 51 51 H 1.08997 * 117.49768 * 0.02562 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 1.6524 -2.1328 1.1906 6 6 2.4836 -3.0283 0.6065 7 6 2.1630 -4.3456 0.5378 8 6 0.9564 -4.8011 1.0687 9 6 0.0938 -3.8847 1.6668 10 6 -1.1879 -4.3259 2.2377 11 8 -1.5519 -5.4780 2.0972 12 7 -1.9589 -3.4535 2.9167 13 6 -3.1797 -3.9175 3.5805 14 6 -3.8633 -2.7374 4.2739 15 1 -3.2233 -2.3659 5.0742 16 7 -4.0980 -1.6683 3.3002 17 6 -4.2079 -0.3701 3.7220 18 1 -4.1211 -0.1344 4.7724 19 6 -4.4298 0.6430 2.7993 20 7 -4.5351 0.3558 1.5191 21 14 -4.5790 2.4139 3.3746 22 1 -3.2364 3.0487 3.3762 23 1 -5.4775 3.1587 2.4563 24 1 -5.1415 2.4425 4.7486 25 6 -5.2000 -3.1952 4.8607 26 6 -6.4773 -2.6509 4.2179 27 6 -6.0421 -2.1522 5.5983 28 6 0.4730 -2.5183 1.7138 29 8 -0.2641 -1.6968 2.2309 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 3.1301 1.4425 0.0005 35 1 1.6768 1.9563 -0.8899 36 1 1.6767 1.9564 0.8900 37 1 1.6053 -0.2617 2.1371 38 1 3.1263 -0.6443 1.2953 39 1 3.4210 -2.6887 0.1913 40 1 2.8434 -5.0423 0.0707 41 1 0.6952 -5.8478 1.0179 42 1 -1.7056 -2.5185 2.9659 43 1 -3.8556 -4.3456 2.8402 44 1 -2.9249 -4.6757 4.3211 45 1 -4.1757 -1.8799 2.3568 46 1 -4.6905 1.0638 0.8745 47 1 -5.2225 -4.2179 5.2373 48 1 -6.3653 -1.9663 3.3772 49 1 -7.3402 -3.3153 4.1720 50 1 -6.6189 -2.4888 6.4598 51 1 -5.6440 -1.1398 5.6651 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690171664.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:39 Heat of formation + Delta-G solvation = 2.047527 kcal Electronic energy + Delta-G solvation = -32157.164211 eV Core-core repulsion = 28058.406219 eV Total energy + Delta-G solvation = -4098.757993 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.64653 -38.99214 -37.46012 -37.09089 -36.32436 -34.16551 -33.37430 -33.02417 -30.75710 -30.04772 -27.97248 -27.14952 -27.08220 -24.96462 -23.37921 -22.76002 -22.33436 -21.40500 -20.65097 -20.02935 -19.01675 -17.79019 -17.55900 -17.16660 -16.77317 -16.13193 -15.71475 -15.23880 -15.03985 -14.79597 -14.55486 -14.52670 -14.31347 -13.77241 -13.63361 -13.28693 -13.19624 -12.92274 -12.71809 -12.58147 -12.38776 -12.33302 -12.13908 -11.99929 -11.87289 -11.18049 -11.10233 -11.03788 -10.93541 -10.83114 -10.79181 -10.72107 -10.41009 -10.03091 -10.00782 -9.81344 -9.60967 -9.48446 -9.32007 -9.03131 -8.82524 -8.34783 -7.98769 -6.88424 -5.67156 -2.95454 0.41910 1.79503 2.43082 3.03826 3.46971 3.52751 3.53330 3.87033 3.95789 4.29696 4.37070 4.62021 4.62636 4.75398 4.76009 4.80384 4.95748 5.05958 5.14132 5.28678 5.34515 5.49868 5.55576 5.63027 5.71912 5.74759 5.75139 5.80885 5.86770 5.88649 5.96981 5.97494 6.08316 6.12965 6.14763 6.23550 6.25225 6.26952 6.35266 6.48256 6.65762 6.71139 6.78189 6.88760 6.94198 7.09720 7.24768 7.39660 7.79275 7.94675 8.40876 8.49316 8.95979 9.61703 10.17339 10.53803 11.54556 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008987 B = 0.004466 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3114.795054 B = 6267.492466 C = 8902.804872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.108 4.108 3 C -0.144 4.144 4 C 0.090 3.910 5 N -0.489 5.489 6 C 0.157 3.843 7 C -0.246 4.246 8 C 0.049 3.951 9 C -0.265 4.265 10 C 0.569 3.431 11 O -0.569 6.569 12 N -0.697 5.697 13 C 0.117 3.883 14 C 0.193 3.807 15 H 0.054 0.946 16 N -0.712 5.712 17 C -0.231 4.231 18 H 0.069 0.931 19 C -0.007 4.007 20 N -0.926 5.926 21 Si 0.899 3.101 22 H -0.292 1.292 23 H -0.294 1.294 24 H -0.283 1.283 25 C -0.176 4.176 26 C -0.163 4.163 27 C -0.176 4.176 28 C 0.522 3.478 29 O -0.506 6.506 30 H 0.072 0.928 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.053 0.947 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.107 0.893 38 H 0.090 0.910 39 H 0.163 0.837 40 H 0.150 0.850 41 H 0.146 0.854 42 H 0.426 0.574 43 H 0.063 0.937 44 H 0.059 0.941 45 H 0.386 0.614 46 H 0.252 0.748 47 H 0.085 0.915 48 H 0.119 0.881 49 H 0.068 0.932 50 H 0.070 0.930 51 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.160 -5.687 -2.931 19.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.127 4.127 3 C -0.202 4.202 4 C -0.031 4.031 5 N -0.197 5.197 6 C 0.027 3.973 7 C -0.269 4.269 8 C 0.026 3.974 9 C -0.272 4.272 10 C 0.355 3.645 11 O -0.451 6.451 12 N -0.358 5.358 13 C -0.008 4.008 14 C 0.082 3.918 15 H 0.072 0.928 16 N -0.354 5.354 17 C -0.362 4.362 18 H 0.087 0.913 19 C -0.203 4.203 20 N -0.574 5.574 21 Si 0.730 3.270 22 H -0.220 1.220 23 H -0.221 1.221 24 H -0.209 1.209 25 C -0.198 4.198 26 C -0.200 4.200 27 C -0.213 4.213 28 C 0.322 3.678 29 O -0.384 6.384 30 H 0.091 0.909 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.125 0.875 38 H 0.108 0.892 39 H 0.180 0.820 40 H 0.168 0.832 41 H 0.164 0.836 42 H 0.274 0.726 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.221 0.779 46 H 0.062 0.938 47 H 0.103 0.897 48 H 0.137 0.863 49 H 0.086 0.914 50 H 0.089 0.911 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 17.396 -5.611 -2.536 18.453 hybrid contribution 0.006 1.242 -0.137 1.249 sum 17.402 -4.369 -2.674 18.140 Atomic orbital electron populations 1.21838 0.92496 1.02738 1.02858 1.21513 0.98315 0.96477 0.96409 1.21769 1.00299 0.95161 1.02978 1.22274 1.00553 0.78460 1.01794 1.45522 1.17534 1.09878 1.46795 1.22133 0.94499 0.90061 0.90595 1.20598 1.00358 0.94712 1.11281 1.21955 0.89939 1.00469 0.85078 1.21149 1.00038 0.92975 1.13041 1.17428 0.83175 0.85279 0.78581 1.90725 1.73756 1.19031 1.61617 1.46565 1.23558 1.14734 1.50927 1.21561 0.86027 0.96902 0.96331 1.19950 0.91750 0.87886 0.92198 0.92784 1.42396 1.85652 1.02012 1.05305 1.19123 1.41073 0.83482 0.92497 0.91333 1.24639 1.03005 0.97376 0.95302 1.69670 1.56313 1.31344 1.00081 0.86320 0.77236 0.85976 0.77432 1.21999 1.22050 1.20907 1.23086 0.94889 0.96806 1.05009 1.22907 0.95627 1.03465 0.97975 1.22847 1.03816 1.00109 0.94543 1.17102 0.80749 0.89521 0.80386 1.90825 1.49004 1.53340 1.45273 0.90892 0.92992 0.92741 0.91243 0.92775 0.91949 0.91923 0.87490 0.89183 0.81971 0.83242 0.83610 0.72561 0.91854 0.92240 0.77946 0.93787 0.89701 0.86313 0.91385 0.91136 0.87959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 7.91 37.16 0.29 -1.89 16 2 C -0.11 -1.12 3.13 -90.62 -0.28 -1.40 16 3 C -0.14 -1.27 9.19 37.16 0.34 -0.93 16 4 C 0.09 0.87 4.92 -4.04 -0.02 0.85 16 5 N -0.49 -5.43 2.47 -119.35 -0.30 -5.72 16 6 C 0.16 1.17 10.25 -16.85 -0.17 1.00 16 7 C -0.25 -1.95 9.99 -40.01 -0.40 -2.35 16 8 C 0.05 0.58 9.70 -38.71 -0.38 0.21 16 9 C -0.26 -4.27 5.92 -104.50 -0.62 -4.89 16 10 C 0.57 11.22 7.73 -12.67 -0.10 11.13 16 11 O -0.57 -12.15 16.41 5.24 0.09 -12.06 16 12 N -0.70 -14.36 5.30 -61.49 -0.33 -14.68 16 13 C 0.12 2.31 5.22 -4.05 -0.02 2.29 16 14 C 0.19 4.02 2.86 -67.94 -0.19 3.83 16 15 H 0.05 1.16 8.08 -51.93 -0.42 0.74 16 16 N -0.71 -17.52 3.08 -53.43 -0.16 -17.68 16 17 C -0.23 -6.19 8.15 -15.06 -0.12 -6.32 16 18 H 0.07 1.83 6.91 -52.49 -0.36 1.46 16 19 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 20 N -0.93 -27.54 13.06 55.49 0.72 -26.82 16 21 Si 0.90 22.45 29.55 -169.99 -5.02 17.42 16 22 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 23 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 24 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 25 C -0.18 -3.36 5.70 -90.62 -0.52 -3.87 16 26 C -0.16 -3.26 9.74 -26.69 -0.26 -3.52 16 27 C -0.18 -3.38 9.87 -26.69 -0.26 -3.64 16 28 C 0.52 8.28 6.00 -14.92 -0.09 8.19 16 29 O -0.51 -9.93 11.39 5.02 0.06 -9.87 16 30 H 0.07 1.33 7.95 -51.93 -0.41 0.92 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.05 0.96 6.03 -51.93 -0.31 0.65 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.11 1.27 7.39 -51.93 -0.38 0.89 16 38 H 0.09 0.52 8.00 -51.93 -0.42 0.10 16 39 H 0.16 0.48 8.02 -52.48 -0.42 0.06 16 40 H 0.15 0.68 8.06 -52.48 -0.42 0.26 16 41 H 0.15 1.64 7.71 -52.49 -0.40 1.23 16 42 H 0.43 9.42 4.74 -40.82 -0.19 9.23 16 43 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 44 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.39 10.49 7.80 -40.82 -0.32 10.17 16 46 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 47 H 0.08 1.44 8.11 -51.93 -0.42 1.02 16 48 H 0.12 2.83 6.68 -51.93 -0.35 2.48 16 49 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 50 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 51 H 0.10 2.19 6.22 -51.93 -0.32 1.86 16 LS Contribution 407.66 15.07 6.14 6.14 Total: -1.00 -33.59 407.66 -9.79 -43.38 By element: Atomic # 1 Polarization: 29.61 SS G_CDS: -8.10 Total: 21.51 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: -2.90 Total: -1.62 kcal Atomic # 7 Polarization: -64.85 SS G_CDS: -0.06 Total: -64.91 kcal Atomic # 8 Polarization: -22.07 SS G_CDS: 0.14 Total: -21.93 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.59 -9.79 -43.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690171664.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.426 kcal (2) G-P(sol) polarization free energy of solvation -33.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds