Wall clock time and date at job start Wed Apr 1 2020 05:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.46953 * 2 1 4 4 C 1.53000 * 109.46634 * 119.99865 * 2 1 3 5 5 N 1.46495 * 109.47248 * 65.00129 * 4 2 1 6 6 C 1.35434 * 119.47334 * 90.00147 * 5 4 2 7 7 C 1.35751 * 121.23221 * 179.70102 * 6 5 4 8 8 C 1.39473 * 120.13267 * 0.27344 * 7 6 5 9 9 C 1.39339 * 118.95587 * 359.97438 * 8 7 6 10 10 C 1.47086 * 120.58340 * 179.97438 * 9 8 7 11 11 O 1.21643 * 119.99992 * 354.15479 * 10 9 8 12 12 N 1.34776 * 119.99554 * 174.14946 * 10 9 8 13 13 C 1.46499 * 119.99832 * 185.10862 * 12 10 9 14 14 C 1.52994 * 109.47418 * 179.97438 * 13 12 10 15 15 H 1.08997 * 109.47014 * 294.99903 * 14 13 12 16 16 N 1.46500 * 109.46959 * 54.99368 * 14 13 12 17 17 C 1.36940 * 119.99981 * 204.99823 * 16 14 13 18 18 H 1.08000 * 119.99927 * 0.02562 * 17 16 14 19 19 C 1.38813 * 119.99870 * 179.97438 * 17 16 14 20 20 N 1.31619 * 120.00170 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99793 * 180.02562 * 19 17 16 22 22 H 1.48507 * 109.47032 * 90.00380 * 21 19 17 23 23 H 1.48505 * 109.47190 * 210.00418 * 21 19 17 24 24 H 1.48497 * 109.47645 * 330.00532 * 21 19 17 25 25 C 1.52996 * 109.47546 * 174.99273 * 14 13 12 26 26 C 1.52997 * 117.50417 * 248.75060 * 25 14 13 27 27 C 1.53003 * 117.50197 * 180.08378 * 25 14 13 28 28 C 1.34652 * 119.47204 * 270.25829 * 5 4 2 29 29 O 1.21886 * 120.10453 * 0.02562 * 28 5 4 30 30 H 1.09001 * 109.47340 * 300.00407 * 1 2 3 31 31 H 1.09003 * 109.46860 * 60.00049 * 1 2 3 32 32 H 1.08997 * 109.47107 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47358 * 239.99958 * 2 1 3 34 34 H 1.09006 * 109.47033 * 179.97438 * 3 2 1 35 35 H 1.08994 * 109.47467 * 299.99690 * 3 2 1 36 36 H 1.09006 * 109.47334 * 60.00128 * 3 2 1 37 37 H 1.09004 * 109.47481 * 304.99730 * 4 2 1 38 38 H 1.09000 * 109.46842 * 185.00149 * 4 2 1 39 39 H 1.08003 * 119.37758 * 359.96981 * 6 5 4 40 40 H 1.08008 * 119.93371 * 180.25158 * 7 6 5 41 41 H 1.07996 * 120.52127 * 180.02562 * 8 7 6 42 42 H 0.96999 * 120.00405 * 5.10283 * 12 10 9 43 43 H 1.09007 * 109.47017 * 300.00038 * 13 12 10 44 44 H 1.09001 * 109.47442 * 59.99364 * 13 12 10 45 45 H 0.97000 * 120.00287 * 25.00547 * 16 14 13 46 46 H 0.97003 * 119.99826 * 179.97438 * 20 19 17 47 47 H 1.09005 * 115.54904 * 34.41830 * 25 14 13 48 48 H 1.09003 * 117.49821 * 359.97438 * 26 25 14 49 49 H 1.09000 * 117.50103 * 145.01947 * 26 25 14 50 50 H 1.09002 * 117.49722 * 214.98197 * 27 25 14 51 51 H 1.08997 * 117.49768 * 0.02562 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 1.6524 -2.1328 1.1906 6 6 2.4836 -3.0283 0.6065 7 6 2.1630 -4.3456 0.5378 8 6 0.9564 -4.8011 1.0687 9 6 0.0938 -3.8847 1.6668 10 6 -1.1879 -4.3259 2.2377 11 8 -1.5519 -5.4780 2.0972 12 7 -1.9589 -3.4535 2.9167 13 6 -3.1797 -3.9175 3.5805 14 6 -3.8633 -2.7374 4.2739 15 1 -3.2233 -2.3659 5.0742 16 7 -4.0980 -1.6683 3.3002 17 6 -4.2079 -0.3701 3.7220 18 1 -4.1211 -0.1344 4.7724 19 6 -4.4298 0.6430 2.7993 20 7 -4.5351 0.3558 1.5191 21 14 -4.5790 2.4139 3.3746 22 1 -3.2364 3.0487 3.3762 23 1 -5.4775 3.1587 2.4563 24 1 -5.1415 2.4425 4.7486 25 6 -5.2000 -3.1952 4.8607 26 6 -6.4773 -2.6509 4.2179 27 6 -6.0421 -2.1522 5.5983 28 6 0.4730 -2.5183 1.7138 29 8 -0.2641 -1.6968 2.2309 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 3.1301 1.4425 0.0005 35 1 1.6768 1.9563 -0.8899 36 1 1.6767 1.9564 0.8900 37 1 1.6053 -0.2617 2.1371 38 1 3.1263 -0.6443 1.2953 39 1 3.4210 -2.6887 0.1913 40 1 2.8434 -5.0423 0.0707 41 1 0.6952 -5.8478 1.0179 42 1 -1.7056 -2.5185 2.9659 43 1 -3.8556 -4.3456 2.8402 44 1 -2.9249 -4.6757 4.3211 45 1 -4.1757 -1.8799 2.3568 46 1 -4.6905 1.0638 0.8745 47 1 -5.2225 -4.2179 5.2373 48 1 -6.3653 -1.9663 3.3772 49 1 -7.3402 -3.3153 4.1720 50 1 -6.6189 -2.4888 6.4598 51 1 -5.6440 -1.1398 5.6651 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690171664.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:38 Heat of formation + Delta-G solvation = -20.215498 kcal Electronic energy + Delta-G solvation = -32158.129608 eV Core-core repulsion = 28058.406219 eV Total energy + Delta-G solvation = -4099.723390 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.63934 -40.45178 -39.12094 -38.19839 -37.25792 -35.78099 -34.99551 -34.33448 -32.57719 -31.15777 -29.71138 -28.22324 -27.90288 -26.24852 -25.28996 -23.87485 -23.67855 -22.98962 -21.88035 -21.18012 -20.63135 -19.34655 -18.75733 -18.56645 -17.89703 -17.18694 -16.86027 -16.75160 -16.63852 -16.29298 -16.03159 -15.70028 -15.49264 -15.28164 -15.25664 -14.65685 -14.56596 -14.42493 -13.99076 -13.71510 -13.50901 -13.38074 -13.23085 -13.02681 -12.95797 -12.91521 -12.89689 -12.68833 -12.60555 -12.14803 -12.08883 -11.97908 -11.93866 -11.74762 -11.60853 -11.20336 -11.04288 -10.96364 -10.91305 -10.79069 -10.63916 -9.91760 -8.99257 -8.98031 -7.87006 -5.14321 -0.49166 0.89775 1.42717 1.43984 1.51435 1.55043 1.79843 2.49982 2.56923 2.78953 3.11932 3.46900 3.53251 3.73647 3.79298 3.86718 3.87608 3.94847 3.99734 4.01748 4.14727 4.24636 4.29434 4.29649 4.43494 4.46955 4.53189 4.57561 4.62397 4.68100 4.73331 4.84189 4.90077 4.93971 4.97243 5.01665 5.04378 5.14079 5.14235 5.23502 5.27864 5.35473 5.40457 5.42301 5.58430 5.63006 5.67343 5.69834 5.99030 6.30993 6.70953 7.02466 7.38613 7.41321 8.09608 8.36254 9.35756 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008987 B = 0.004466 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3114.795054 B = 6267.492466 C = 8902.804872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.097 4.097 3 C -0.141 4.141 4 C 0.088 3.912 5 N -0.485 5.485 6 C 0.186 3.814 7 C -0.244 4.244 8 C 0.074 3.926 9 C -0.331 4.331 10 C 0.561 3.439 11 O -0.600 6.600 12 N -0.711 5.711 13 C 0.124 3.876 14 C 0.194 3.806 15 H 0.047 0.953 16 N -0.716 5.716 17 C -0.216 4.216 18 H 0.071 0.929 19 C -0.067 4.067 20 N -0.962 5.962 21 Si 0.958 3.042 22 H -0.294 1.294 23 H -0.299 1.299 24 H -0.270 1.270 25 C -0.169 4.169 26 C -0.170 4.170 27 C -0.167 4.167 28 C 0.514 3.486 29 O -0.564 6.564 30 H 0.028 0.972 31 H 0.046 0.954 32 H 0.024 0.976 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.058 0.942 36 H 0.042 0.958 37 H 0.073 0.927 38 H 0.152 0.848 39 H 0.231 0.769 40 H 0.200 0.800 41 H 0.149 0.851 42 H 0.418 0.582 43 H 0.048 0.952 44 H 0.077 0.923 45 H 0.370 0.630 46 H 0.245 0.755 47 H 0.118 0.882 48 H 0.075 0.925 49 H 0.095 0.905 50 H 0.106 0.894 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.344 -6.556 -3.281 23.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.116 4.116 3 C -0.198 4.198 4 C -0.032 4.032 5 N -0.191 5.191 6 C 0.056 3.944 7 C -0.266 4.266 8 C 0.050 3.950 9 C -0.338 4.338 10 C 0.351 3.649 11 O -0.485 6.485 12 N -0.371 5.371 13 C -0.001 4.001 14 C 0.084 3.916 15 H 0.065 0.935 16 N -0.355 5.355 17 C -0.348 4.348 18 H 0.089 0.911 19 C -0.259 4.259 20 N -0.613 5.613 21 Si 0.788 3.212 22 H -0.222 1.222 23 H -0.226 1.226 24 H -0.195 1.195 25 C -0.191 4.191 26 C -0.207 4.207 27 C -0.204 4.204 28 C 0.317 3.683 29 O -0.448 6.448 30 H 0.047 0.953 31 H 0.065 0.935 32 H 0.043 0.957 33 H 0.118 0.882 34 H 0.112 0.888 35 H 0.077 0.923 36 H 0.061 0.939 37 H 0.092 0.908 38 H 0.169 0.831 39 H 0.248 0.752 40 H 0.217 0.783 41 H 0.166 0.834 42 H 0.265 0.735 43 H 0.066 0.934 44 H 0.095 0.905 45 H 0.202 0.798 46 H 0.053 0.947 47 H 0.135 0.865 48 H 0.093 0.907 49 H 0.113 0.887 50 H 0.124 0.876 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 21.618 -6.503 -2.850 22.754 hybrid contribution -1.114 1.418 -0.100 1.806 sum 20.504 -5.086 -2.950 21.331 Atomic orbital electron populations 1.21746 0.97271 0.99947 1.00352 1.21479 0.93789 0.98279 0.98071 1.21752 1.02649 0.93522 1.01920 1.22473 1.03613 0.77143 0.99944 1.45577 1.16428 1.11354 1.45704 1.23311 0.95082 0.89266 0.86789 1.21165 0.99036 0.95994 1.10357 1.22289 0.90362 0.99946 0.82370 1.20861 1.00208 0.94347 1.18388 1.18072 0.84297 0.84732 0.77805 1.90665 1.74926 1.19910 1.63007 1.46719 1.23955 1.14656 1.51745 1.21477 0.85890 0.96594 0.96169 1.20065 0.92950 0.87299 0.91242 0.93466 1.42417 1.85654 1.02348 1.05085 1.19368 1.38611 0.84464 0.92385 0.91091 1.25321 1.04213 1.00940 0.95452 1.69838 1.58572 1.31824 1.01083 0.85364 0.76756 0.81695 0.77350 1.22205 1.22578 1.19490 1.23016 0.93014 0.98394 1.04635 1.22768 0.97204 1.03623 0.97125 1.22837 1.03610 0.98778 0.95140 1.17135 0.81826 0.89014 0.80370 1.90776 1.51158 1.54536 1.48299 0.95308 0.93454 0.95723 0.88232 0.88817 0.92264 0.93895 0.90792 0.83064 0.75219 0.78304 0.83372 0.73473 0.93361 0.90472 0.79813 0.94657 0.86452 0.90657 0.88677 0.87583 0.90623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.49 7.91 71.98 0.57 -3.92 16 2 C -0.10 -1.82 3.13 -10.79 -0.03 -1.85 16 3 C -0.14 -2.16 9.19 71.98 0.66 -1.50 16 4 C 0.09 1.47 4.92 86.38 0.43 1.89 16 5 N -0.48 -9.64 2.47 -649.71 -1.61 -11.25 16 6 C 0.19 1.66 10.25 83.56 0.86 2.51 16 7 C -0.24 -2.61 9.99 21.99 0.22 -2.39 16 8 C 0.07 1.66 9.70 22.83 0.22 1.88 16 9 C -0.33 -11.12 5.92 -19.79 -0.12 -11.24 16 10 C 0.56 23.82 7.73 86.56 0.67 24.49 16 11 O -0.60 -27.13 16.41 -4.17 -0.07 -27.20 16 12 N -0.71 -31.87 5.30 -466.70 -2.47 -34.35 16 13 C 0.12 5.20 5.22 86.38 0.45 5.65 16 14 C 0.19 8.47 2.86 44.99 0.13 8.60 16 15 H 0.05 2.13 8.08 -2.39 -0.02 2.11 16 16 N -0.72 -37.71 3.08 -322.95 -0.99 -38.70 16 17 C -0.22 -12.28 8.15 84.03 0.69 -11.59 16 18 H 0.07 3.94 6.91 -2.91 -0.02 3.92 16 19 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 20 N -0.96 -61.13 13.06 21.65 0.28 -60.85 16 21 Si 0.96 48.36 29.55 68.60 2.03 50.38 16 22 H -0.29 -14.81 7.11 99.48 0.71 -14.11 16 23 H -0.30 -15.22 7.11 99.48 0.71 -14.52 16 24 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 25 C -0.17 -6.45 5.70 -10.80 -0.06 -6.51 16 26 C -0.17 -6.89 9.74 30.62 0.30 -6.60 16 27 C -0.17 -6.29 9.87 30.62 0.30 -5.98 16 28 C 0.51 16.99 6.00 85.16 0.51 17.50 16 29 O -0.56 -24.39 11.39 -4.95 -0.06 -24.45 16 30 H 0.03 1.16 7.95 -2.39 -0.02 1.14 16 31 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.02 0.93 6.03 -2.39 -0.01 0.91 16 33 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 35 H 0.06 0.95 8.14 -2.39 -0.02 0.94 16 36 H 0.04 0.83 8.14 -2.38 -0.02 0.81 16 37 H 0.07 1.79 7.39 -2.38 -0.02 1.78 16 38 H 0.15 0.73 8.00 -2.39 -0.02 0.72 16 39 H 0.23 -0.93 8.02 -2.91 -0.02 -0.95 16 40 H 0.20 0.29 8.06 -2.91 -0.02 0.26 16 41 H 0.15 3.17 7.71 -2.91 -0.02 3.14 16 42 H 0.42 20.41 4.74 -92.76 -0.44 19.97 16 43 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 44 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 45 H 0.37 21.85 7.80 -92.71 -0.72 21.12 16 46 H 0.24 15.26 8.31 -92.71 -0.77 14.49 16 47 H 0.12 3.77 8.11 -2.38 -0.02 3.75 16 48 H 0.07 3.78 6.68 -2.39 -0.02 3.76 16 49 H 0.09 3.31 8.14 -2.39 -0.02 3.30 16 50 H 0.11 3.27 8.14 -2.39 -0.02 3.25 16 51 H 0.08 3.27 6.22 -2.39 -0.01 3.26 16 Total: -1.00 -86.68 407.66 3.15 -83.53 By element: Atomic # 1 Polarization: 55.64 SS G_CDS: -0.22 Total: 55.42 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: 6.25 Total: 7.46 kcal Atomic # 7 Polarization: -140.35 SS G_CDS: -4.79 Total: -145.14 kcal Atomic # 8 Polarization: -51.52 SS G_CDS: -0.12 Total: -51.65 kcal Atomic # 14 Polarization: 48.36 SS G_CDS: 2.03 Total: 50.38 kcal Total: -86.68 3.15 -83.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690171664.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.310 kcal (2) G-P(sol) polarization free energy of solvation -86.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds