Wall clock time and date at job start Wed Apr 1 2020 05:32:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 C 1.52996 * 109.46953 * 2 1
4 4 C 1.53000 * 109.46634 * 119.99865 * 2 1 3
5 5 N 1.46495 * 109.47248 * 65.00129 * 4 2 1
6 6 C 1.35434 * 119.47334 * 90.00147 * 5 4 2
7 7 C 1.35751 * 121.23221 * 179.70102 * 6 5 4
8 8 C 1.39473 * 120.13267 * 0.27344 * 7 6 5
9 9 C 1.39339 * 118.95587 * 359.97438 * 8 7 6
10 10 C 1.47086 * 120.58340 * 179.97438 * 9 8 7
11 11 O 1.21643 * 119.99992 * 354.15479 * 10 9 8
12 12 N 1.34776 * 119.99554 * 174.14946 * 10 9 8
13 13 C 1.46499 * 119.99832 * 185.10862 * 12 10 9
14 14 C 1.52994 * 109.47418 * 179.97438 * 13 12 10
15 15 H 1.08997 * 109.47014 * 294.99903 * 14 13 12
16 16 N 1.46500 * 109.46959 * 54.99368 * 14 13 12
17 17 C 1.36940 * 119.99981 * 204.99823 * 16 14 13
18 18 H 1.08000 * 119.99927 * 0.02562 * 17 16 14
19 19 C 1.38813 * 119.99870 * 179.97438 * 17 16 14
20 20 N 1.31619 * 120.00170 * 0.02562 * 19 17 16
21 21 Si 1.86799 * 119.99793 * 180.02562 * 19 17 16
22 22 H 1.48507 * 109.47032 * 90.00380 * 21 19 17
23 23 H 1.48505 * 109.47190 * 210.00418 * 21 19 17
24 24 H 1.48497 * 109.47645 * 330.00532 * 21 19 17
25 25 C 1.52996 * 109.47546 * 174.99273 * 14 13 12
26 26 C 1.52997 * 117.50417 * 248.75060 * 25 14 13
27 27 C 1.53003 * 117.50197 * 180.08378 * 25 14 13
28 28 C 1.34652 * 119.47204 * 270.25829 * 5 4 2
29 29 O 1.21886 * 120.10453 * 0.02562 * 28 5 4
30 30 H 1.09001 * 109.47340 * 300.00407 * 1 2 3
31 31 H 1.09003 * 109.46860 * 60.00049 * 1 2 3
32 32 H 1.08997 * 109.47107 * 180.02562 * 1 2 3
33 33 H 1.08994 * 109.47358 * 239.99958 * 2 1 3
34 34 H 1.09006 * 109.47033 * 179.97438 * 3 2 1
35 35 H 1.08994 * 109.47467 * 299.99690 * 3 2 1
36 36 H 1.09006 * 109.47334 * 60.00128 * 3 2 1
37 37 H 1.09004 * 109.47481 * 304.99730 * 4 2 1
38 38 H 1.09000 * 109.46842 * 185.00149 * 4 2 1
39 39 H 1.08003 * 119.37758 * 359.96981 * 6 5 4
40 40 H 1.08008 * 119.93371 * 180.25158 * 7 6 5
41 41 H 1.07996 * 120.52127 * 180.02562 * 8 7 6
42 42 H 0.96999 * 120.00405 * 5.10283 * 12 10 9
43 43 H 1.09007 * 109.47017 * 300.00038 * 13 12 10
44 44 H 1.09001 * 109.47442 * 59.99364 * 13 12 10
45 45 H 0.97000 * 120.00287 * 25.00547 * 16 14 13
46 46 H 0.97003 * 119.99826 * 179.97438 * 20 19 17
47 47 H 1.09005 * 115.54904 * 34.41830 * 25 14 13
48 48 H 1.09003 * 117.49821 * 359.97438 * 26 25 14
49 49 H 1.09000 * 117.50103 * 145.01947 * 26 25 14
50 50 H 1.09002 * 117.49722 * 214.98197 * 27 25 14
51 51 H 1.08997 * 117.49768 * 0.02562 * 27 25 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0399 -0.7212 1.2493
5 7 1.6524 -2.1328 1.1906
6 6 2.4836 -3.0283 0.6065
7 6 2.1630 -4.3456 0.5378
8 6 0.9564 -4.8011 1.0687
9 6 0.0938 -3.8847 1.6668
10 6 -1.1879 -4.3259 2.2377
11 8 -1.5519 -5.4780 2.0972
12 7 -1.9589 -3.4535 2.9167
13 6 -3.1797 -3.9175 3.5805
14 6 -3.8633 -2.7374 4.2739
15 1 -3.2233 -2.3659 5.0742
16 7 -4.0980 -1.6683 3.3002
17 6 -4.2079 -0.3701 3.7220
18 1 -4.1211 -0.1344 4.7724
19 6 -4.4298 0.6430 2.7993
20 7 -4.5351 0.3558 1.5191
21 14 -4.5790 2.4139 3.3746
22 1 -3.2364 3.0487 3.3762
23 1 -5.4775 3.1587 2.4563
24 1 -5.1415 2.4425 4.7486
25 6 -5.2000 -3.1952 4.8607
26 6 -6.4773 -2.6509 4.2179
27 6 -6.0421 -2.1522 5.5983
28 6 0.4730 -2.5183 1.7138
29 8 -0.2641 -1.6968 2.2309
30 1 -0.3634 0.5139 0.8899
31 1 -0.3633 0.5138 -0.8900
32 1 -0.3633 -1.0276 0.0005
33 1 1.8934 -0.5138 -0.8899
34 1 3.1301 1.4425 0.0005
35 1 1.6768 1.9563 -0.8899
36 1 1.6767 1.9564 0.8900
37 1 1.6053 -0.2617 2.1371
38 1 3.1263 -0.6443 1.2953
39 1 3.4210 -2.6887 0.1913
40 1 2.8434 -5.0423 0.0707
41 1 0.6952 -5.8478 1.0179
42 1 -1.7056 -2.5185 2.9659
43 1 -3.8556 -4.3456 2.8402
44 1 -2.9249 -4.6757 4.3211
45 1 -4.1757 -1.8799 2.3568
46 1 -4.6905 1.0638 0.8745
47 1 -5.2225 -4.2179 5.2373
48 1 -6.3653 -1.9663 3.3772
49 1 -7.3402 -3.3153 4.1720
50 1 -6.6189 -2.4888 6.4598
51 1 -5.6440 -1.1398 5.6651
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001690171664.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:32:38
Heat of formation + Delta-G solvation = -20.215498 kcal
Electronic energy + Delta-G solvation = -32158.129608 eV
Core-core repulsion = 28058.406219 eV
Total energy + Delta-G solvation = -4099.723390 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.02 seconds
Orbital eigenvalues (eV)
-42.63934 -40.45178 -39.12094 -38.19839 -37.25792 -35.78099 -34.99551 -34.33448
-32.57719 -31.15777 -29.71138 -28.22324 -27.90288 -26.24852 -25.28996 -23.87485
-23.67855 -22.98962 -21.88035 -21.18012 -20.63135 -19.34655 -18.75733 -18.56645
-17.89703 -17.18694 -16.86027 -16.75160 -16.63852 -16.29298 -16.03159 -15.70028
-15.49264 -15.28164 -15.25664 -14.65685 -14.56596 -14.42493 -13.99076 -13.71510
-13.50901 -13.38074 -13.23085 -13.02681 -12.95797 -12.91521 -12.89689 -12.68833
-12.60555 -12.14803 -12.08883 -11.97908 -11.93866 -11.74762 -11.60853 -11.20336
-11.04288 -10.96364 -10.91305 -10.79069 -10.63916 -9.91760 -8.99257 -8.98031
-7.87006 -5.14321 -0.49166 0.89775 1.42717 1.43984 1.51435 1.55043
1.79843 2.49982 2.56923 2.78953 3.11932 3.46900 3.53251 3.73647
3.79298 3.86718 3.87608 3.94847 3.99734 4.01748 4.14727 4.24636
4.29434 4.29649 4.43494 4.46955 4.53189 4.57561 4.62397 4.68100
4.73331 4.84189 4.90077 4.93971 4.97243 5.01665 5.04378 5.14079
5.14235 5.23502 5.27864 5.35473 5.40457 5.42301 5.58430 5.63006
5.67343 5.69834 5.99030 6.30993 6.70953 7.02466 7.38613 7.41321
8.09608 8.36254 9.35756
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.008987 B = 0.004466 C = 0.003144
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3114.795054 B = 6267.492466 C = 8902.804872
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C -0.097 4.097
3 C -0.141 4.141
4 C 0.088 3.912
5 N -0.485 5.485
6 C 0.186 3.814
7 C -0.244 4.244
8 C 0.074 3.926
9 C -0.331 4.331
10 C 0.561 3.439
11 O -0.600 6.600
12 N -0.711 5.711
13 C 0.124 3.876
14 C 0.194 3.806
15 H 0.047 0.953
16 N -0.716 5.716
17 C -0.216 4.216
18 H 0.071 0.929
19 C -0.067 4.067
20 N -0.962 5.962
21 Si 0.958 3.042
22 H -0.294 1.294
23 H -0.299 1.299
24 H -0.270 1.270
25 C -0.169 4.169
26 C -0.170 4.170
27 C -0.167 4.167
28 C 0.514 3.486
29 O -0.564 6.564
30 H 0.028 0.972
31 H 0.046 0.954
32 H 0.024 0.976
33 H 0.099 0.901
34 H 0.093 0.907
35 H 0.058 0.942
36 H 0.042 0.958
37 H 0.073 0.927
38 H 0.152 0.848
39 H 0.231 0.769
40 H 0.200 0.800
41 H 0.149 0.851
42 H 0.418 0.582
43 H 0.048 0.952
44 H 0.077 0.923
45 H 0.370 0.630
46 H 0.245 0.755
47 H 0.118 0.882
48 H 0.075 0.925
49 H 0.095 0.905
50 H 0.106 0.894
51 H 0.075 0.925
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 22.344 -6.556 -3.281 23.516
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.193 4.193
2 C -0.116 4.116
3 C -0.198 4.198
4 C -0.032 4.032
5 N -0.191 5.191
6 C 0.056 3.944
7 C -0.266 4.266
8 C 0.050 3.950
9 C -0.338 4.338
10 C 0.351 3.649
11 O -0.485 6.485
12 N -0.371 5.371
13 C -0.001 4.001
14 C 0.084 3.916
15 H 0.065 0.935
16 N -0.355 5.355
17 C -0.348 4.348
18 H 0.089 0.911
19 C -0.259 4.259
20 N -0.613 5.613
21 Si 0.788 3.212
22 H -0.222 1.222
23 H -0.226 1.226
24 H -0.195 1.195
25 C -0.191 4.191
26 C -0.207 4.207
27 C -0.204 4.204
28 C 0.317 3.683
29 O -0.448 6.448
30 H 0.047 0.953
31 H 0.065 0.935
32 H 0.043 0.957
33 H 0.118 0.882
34 H 0.112 0.888
35 H 0.077 0.923
36 H 0.061 0.939
37 H 0.092 0.908
38 H 0.169 0.831
39 H 0.248 0.752
40 H 0.217 0.783
41 H 0.166 0.834
42 H 0.265 0.735
43 H 0.066 0.934
44 H 0.095 0.905
45 H 0.202 0.798
46 H 0.053 0.947
47 H 0.135 0.865
48 H 0.093 0.907
49 H 0.113 0.887
50 H 0.124 0.876
51 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges 21.618 -6.503 -2.850 22.754
hybrid contribution -1.114 1.418 -0.100 1.806
sum 20.504 -5.086 -2.950 21.331
Atomic orbital electron populations
1.21746 0.97271 0.99947 1.00352 1.21479 0.93789 0.98279 0.98071
1.21752 1.02649 0.93522 1.01920 1.22473 1.03613 0.77143 0.99944
1.45577 1.16428 1.11354 1.45704 1.23311 0.95082 0.89266 0.86789
1.21165 0.99036 0.95994 1.10357 1.22289 0.90362 0.99946 0.82370
1.20861 1.00208 0.94347 1.18388 1.18072 0.84297 0.84732 0.77805
1.90665 1.74926 1.19910 1.63007 1.46719 1.23955 1.14656 1.51745
1.21477 0.85890 0.96594 0.96169 1.20065 0.92950 0.87299 0.91242
0.93466 1.42417 1.85654 1.02348 1.05085 1.19368 1.38611 0.84464
0.92385 0.91091 1.25321 1.04213 1.00940 0.95452 1.69838 1.58572
1.31824 1.01083 0.85364 0.76756 0.81695 0.77350 1.22205 1.22578
1.19490 1.23016 0.93014 0.98394 1.04635 1.22768 0.97204 1.03623
0.97125 1.22837 1.03610 0.98778 0.95140 1.17135 0.81826 0.89014
0.80370 1.90776 1.51158 1.54536 1.48299 0.95308 0.93454 0.95723
0.88232 0.88817 0.92264 0.93895 0.90792 0.83064 0.75219 0.78304
0.83372 0.73473 0.93361 0.90472 0.79813 0.94657 0.86452 0.90657
0.88677 0.87583 0.90623
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -4.49 7.91 71.98 0.57 -3.92 16
2 C -0.10 -1.82 3.13 -10.79 -0.03 -1.85 16
3 C -0.14 -2.16 9.19 71.98 0.66 -1.50 16
4 C 0.09 1.47 4.92 86.38 0.43 1.89 16
5 N -0.48 -9.64 2.47 -649.71 -1.61 -11.25 16
6 C 0.19 1.66 10.25 83.56 0.86 2.51 16
7 C -0.24 -2.61 9.99 21.99 0.22 -2.39 16
8 C 0.07 1.66 9.70 22.83 0.22 1.88 16
9 C -0.33 -11.12 5.92 -19.79 -0.12 -11.24 16
10 C 0.56 23.82 7.73 86.56 0.67 24.49 16
11 O -0.60 -27.13 16.41 -4.17 -0.07 -27.20 16
12 N -0.71 -31.87 5.30 -466.70 -2.47 -34.35 16
13 C 0.12 5.20 5.22 86.38 0.45 5.65 16
14 C 0.19 8.47 2.86 44.99 0.13 8.60 16
15 H 0.05 2.13 8.08 -2.39 -0.02 2.11 16
16 N -0.72 -37.71 3.08 -322.95 -0.99 -38.70 16
17 C -0.22 -12.28 8.15 84.03 0.69 -11.59 16
18 H 0.07 3.94 6.91 -2.91 -0.02 3.92 16
19 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16
20 N -0.96 -61.13 13.06 21.65 0.28 -60.85 16
21 Si 0.96 48.36 29.55 68.60 2.03 50.38 16
22 H -0.29 -14.81 7.11 99.48 0.71 -14.11 16
23 H -0.30 -15.22 7.11 99.48 0.71 -14.52 16
24 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16
25 C -0.17 -6.45 5.70 -10.80 -0.06 -6.51 16
26 C -0.17 -6.89 9.74 30.62 0.30 -6.60 16
27 C -0.17 -6.29 9.87 30.62 0.30 -5.98 16
28 C 0.51 16.99 6.00 85.16 0.51 17.50 16
29 O -0.56 -24.39 11.39 -4.95 -0.06 -24.45 16
30 H 0.03 1.16 7.95 -2.39 -0.02 1.14 16
31 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16
32 H 0.02 0.93 6.03 -2.39 -0.01 0.91 16
33 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16
34 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16
35 H 0.06 0.95 8.14 -2.39 -0.02 0.94 16
36 H 0.04 0.83 8.14 -2.38 -0.02 0.81 16
37 H 0.07 1.79 7.39 -2.38 -0.02 1.78 16
38 H 0.15 0.73 8.00 -2.39 -0.02 0.72 16
39 H 0.23 -0.93 8.02 -2.91 -0.02 -0.95 16
40 H 0.20 0.29 8.06 -2.91 -0.02 0.26 16
41 H 0.15 3.17 7.71 -2.91 -0.02 3.14 16
42 H 0.42 20.41 4.74 -92.76 -0.44 19.97 16
43 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16
44 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16
45 H 0.37 21.85 7.80 -92.71 -0.72 21.12 16
46 H 0.24 15.26 8.31 -92.71 -0.77 14.49 16
47 H 0.12 3.77 8.11 -2.38 -0.02 3.75 16
48 H 0.07 3.78 6.68 -2.39 -0.02 3.76 16
49 H 0.09 3.31 8.14 -2.39 -0.02 3.30 16
50 H 0.11 3.27 8.14 -2.39 -0.02 3.25 16
51 H 0.08 3.27 6.22 -2.39 -0.01 3.26 16
Total: -1.00 -86.68 407.66 3.15 -83.53
By element:
Atomic # 1 Polarization: 55.64 SS G_CDS: -0.22 Total: 55.42 kcal
Atomic # 6 Polarization: 1.21 SS G_CDS: 6.25 Total: 7.46 kcal
Atomic # 7 Polarization: -140.35 SS G_CDS: -4.79 Total: -145.14 kcal
Atomic # 8 Polarization: -51.52 SS G_CDS: -0.12 Total: -51.65 kcal
Atomic # 14 Polarization: 48.36 SS G_CDS: 2.03 Total: 50.38 kcal
Total: -86.68 3.15 -83.53 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001690171664.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 63.310 kcal
(2) G-P(sol) polarization free energy of solvation -86.675 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.365 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.150 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.525 kcal
(6) G-S(sol) free energy of system = (1) + (5) -20.215 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.02 seconds