Wall clock time and date at job start Wed Apr 1 2020 04:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21277 * 119.99972 * 2 1 4 4 N 1.34777 * 119.99813 * 179.97438 * 2 1 3 5 5 C 1.39438 * 119.99734 * 185.27985 * 4 2 1 6 6 C 1.39130 * 119.92945 * 33.53481 * 5 4 2 7 7 C 1.37674 * 120.07454 * 180.02562 * 6 5 4 8 8 C 1.39744 * 119.92596 * 359.97438 * 7 6 5 9 9 C 1.47598 * 120.07258 * 179.97438 * 8 7 6 10 10 O 1.21579 * 119.99965 * 0.02562 * 9 8 7 11 11 N 1.34779 * 119.99763 * 179.97438 * 9 8 7 12 12 C 1.46500 * 119.99796 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.47127 * 35.00142 * 12 11 9 14 14 C 1.52999 * 109.47280 * 155.00043 * 12 11 9 15 15 N 1.46496 * 109.46967 * 305.00354 * 14 12 11 16 16 C 1.36944 * 120.00151 * 179.97438 * 15 14 12 17 17 H 1.08002 * 119.99575 * 359.72711 * 16 15 14 18 18 C 1.38805 * 120.00103 * 179.97438 * 16 15 14 19 19 N 1.31614 * 120.00468 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99684 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47487 * 90.00164 * 20 18 16 22 22 H 1.48498 * 109.47027 * 209.99971 * 20 18 16 23 23 H 1.48497 * 109.47430 * 329.99668 * 20 18 16 24 24 C 1.52996 * 109.47433 * 275.00349 * 12 11 9 25 25 C 1.53009 * 109.47186 * 64.99957 * 24 12 11 26 26 C 1.52991 * 109.46968 * 64.99935 * 25 24 12 27 27 C 1.52996 * 109.46854 * 185.00535 * 25 24 12 28 28 C 1.39746 * 119.85463 * 0.25036 * 8 7 6 29 29 C 1.37670 * 119.92519 * 359.51094 * 28 8 7 30 30 H 1.08996 * 109.46840 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46693 * 299.99822 * 1 2 3 32 32 H 1.08993 * 109.47074 * 59.99765 * 1 2 3 33 33 H 0.96997 * 120.00091 * 5.28262 * 4 2 1 34 34 H 1.07998 * 119.96096 * 0.02724 * 6 5 4 35 35 H 1.08001 * 120.03324 * 179.97438 * 7 6 5 36 36 H 0.96998 * 120.00228 * 0.02562 * 11 9 8 37 37 H 1.08998 * 109.47646 * 184.99943 * 14 12 11 38 38 H 1.08998 * 109.46796 * 65.00115 * 14 12 11 39 39 H 0.96998 * 120.00224 * 0.02562 * 15 14 12 40 40 H 0.97000 * 120.00325 * 179.97438 * 19 18 16 41 41 H 1.08999 * 109.47520 * 185.00077 * 24 12 11 42 42 H 1.09005 * 109.47017 * 305.00102 * 24 12 11 43 43 H 1.09004 * 109.46692 * 305.00003 * 25 24 12 44 44 H 1.09004 * 109.47358 * 60.00477 * 26 25 24 45 45 H 1.09007 * 109.46978 * 179.97438 * 26 25 24 46 46 H 1.08998 * 109.47486 * 300.00175 * 26 25 24 47 47 H 1.08992 * 109.47540 * 59.99678 * 27 25 24 48 48 H 1.09007 * 109.46858 * 180.02562 * 27 25 24 49 49 H 1.09004 * 109.47037 * 299.99257 * 27 25 24 50 50 H 1.08000 * 120.03852 * 179.72205 * 28 8 7 51 51 H 1.08000 * 119.96483 * 180.20873 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5708 -1.1697 0.1116 6 6 4.2079 -0.1973 0.8761 7 6 5.5801 -0.1966 0.9874 8 6 6.3332 -1.1745 0.3320 9 6 7.8045 -1.1764 0.4487 10 8 8.3626 -0.3270 1.1159 11 7 8.5294 -2.1205 -0.1836 12 6 9.9898 -2.1222 -0.0683 13 1 10.2759 -1.7895 0.9295 14 6 10.5185 -3.5383 -0.3047 15 7 9.8586 -4.4661 0.6172 16 6 10.1733 -5.7986 0.5896 17 1 10.9048 -6.1662 -0.1149 18 6 9.5485 -6.6776 1.4635 19 7 8.6539 -6.2304 2.3190 20 14 9.9783 -8.4951 1.4262 21 1 11.1029 -8.7571 2.3599 22 1 8.7956 -9.2920 1.8398 23 1 10.3782 -8.8811 0.0491 24 6 10.5850 -1.1748 -1.1119 25 6 10.1560 0.2607 -0.8011 26 6 10.7628 0.6965 0.5340 27 6 10.6462 1.1912 -1.9122 28 6 5.6905 -2.1469 -0.4388 29 6 4.3177 -2.1449 -0.5420 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.6990 -2.0055 -0.0764 34 1 3.6252 0.5578 1.3827 35 1 6.0739 0.5588 1.5806 36 1 8.0841 -2.7984 -0.7157 37 1 11.5945 -3.5581 -0.1318 38 1 10.3101 -3.8372 -1.3320 39 1 9.1982 -4.1368 1.2467 40 1 8.2170 -6.8447 2.9294 41 1 11.6726 -1.2427 -1.0860 42 1 10.2269 -1.4546 -2.1027 43 1 9.0689 0.3097 -0.7394 44 1 11.8500 0.6475 0.4723 45 1 10.4576 1.7193 0.7552 46 1 10.4136 0.0335 1.3255 47 1 10.2139 0.8807 -2.8634 48 1 10.3410 2.2139 -1.6906 49 1 11.7334 1.1422 -1.9740 50 1 6.2700 -2.9013 -0.9503 51 1 3.8202 -2.8982 -1.1348 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698877467.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:57 Heat of formation + Delta-G solvation = -43.053829 kcal Electronic energy + Delta-G solvation = -30848.937776 eV Core-core repulsion = 26748.224042 eV Total energy + Delta-G solvation = -4100.713734 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.82898 -39.95016 -38.27804 -36.55119 -35.02848 -34.85441 -33.45652 -31.60960 -31.03600 -30.78808 -29.43103 -28.41317 -26.82746 -25.53272 -23.94855 -23.10699 -22.65573 -21.08759 -20.79444 -20.00667 -19.61555 -18.21726 -17.54932 -17.25433 -16.93467 -16.04699 -15.75611 -15.53334 -14.95836 -14.68051 -14.43684 -14.32566 -14.07649 -13.85595 -13.62759 -13.47949 -13.32118 -13.16659 -12.99622 -12.96376 -12.79941 -12.61079 -12.38906 -12.07792 -11.97295 -11.84529 -11.46235 -11.29733 -11.02189 -10.94887 -10.82704 -10.59265 -10.48286 -10.22962 -10.21036 -10.15340 -9.97351 -9.71772 -9.43735 -9.01503 -8.92453 -8.58096 -8.22977 -6.96535 -5.78679 -3.08528 0.80668 1.38024 2.19069 2.73435 3.13201 3.41055 3.46497 3.47856 3.55159 4.00035 4.32480 4.55338 4.68292 4.80033 4.86318 4.94530 4.95398 5.06169 5.23501 5.24624 5.27274 5.30562 5.42654 5.45290 5.53330 5.63346 5.69733 5.76389 5.92556 5.96761 5.98947 6.04849 6.09526 6.15070 6.16008 6.17173 6.23659 6.31629 6.35403 6.43132 6.48767 6.54014 6.69602 6.74335 6.85124 6.90720 7.01889 7.03495 7.67186 7.73785 7.94305 8.38960 8.62312 9.50873 10.07226 10.42844 11.43357 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007634 B = 0.003242 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3667.037901 B = 8634.067026 C =11679.365262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.508 3.492 3 O -0.524 6.524 4 N -0.673 5.673 5 C 0.161 3.839 6 C -0.133 4.133 7 C -0.040 4.040 8 C -0.142 4.142 9 C 0.558 3.442 10 O -0.535 6.535 11 N -0.704 5.704 12 C 0.136 3.864 13 H 0.092 0.908 14 C 0.144 3.856 15 N -0.731 5.731 16 C -0.242 4.242 17 H 0.070 0.930 18 C -0.012 4.012 19 N -0.930 5.930 20 Si 0.906 3.094 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.282 1.282 24 C -0.122 4.122 25 C -0.093 4.093 26 C -0.138 4.138 27 C -0.146 4.146 28 C -0.059 4.059 29 C -0.153 4.153 30 H 0.079 0.921 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.413 0.587 34 H 0.136 0.864 35 H 0.139 0.861 36 H 0.401 0.599 37 H 0.033 0.967 38 H 0.023 0.977 39 H 0.386 0.614 40 H 0.255 0.745 41 H 0.070 0.930 42 H 0.061 0.939 43 H 0.076 0.924 44 H 0.037 0.963 45 H 0.042 0.958 46 H 0.077 0.923 47 H 0.047 0.953 48 H 0.048 0.952 49 H 0.049 0.951 50 H 0.133 0.867 51 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.397 12.312 -8.139 19.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.297 3.703 3 O -0.399 6.399 4 N -0.318 5.318 5 C 0.067 3.933 6 C -0.153 4.153 7 C -0.060 4.060 8 C -0.145 4.145 9 C 0.345 3.655 10 O -0.414 6.414 11 N -0.355 5.355 12 C 0.032 3.968 13 H 0.110 0.890 14 C 0.015 3.985 15 N -0.376 5.376 16 C -0.373 4.373 17 H 0.088 0.912 18 C -0.208 4.208 19 N -0.578 5.578 20 Si 0.737 3.263 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.208 1.208 24 C -0.161 4.161 25 C -0.112 4.112 26 C -0.195 4.195 27 C -0.203 4.203 28 C -0.079 4.079 29 C -0.173 4.173 30 H 0.098 0.902 31 H 0.118 0.882 32 H 0.116 0.884 33 H 0.249 0.751 34 H 0.154 0.846 35 H 0.156 0.844 36 H 0.237 0.763 37 H 0.051 0.949 38 H 0.041 0.959 39 H 0.221 0.779 40 H 0.065 0.935 41 H 0.088 0.912 42 H 0.080 0.920 43 H 0.094 0.906 44 H 0.056 0.944 45 H 0.061 0.939 46 H 0.095 0.905 47 H 0.066 0.934 48 H 0.067 0.933 49 H 0.068 0.932 50 H 0.151 0.849 51 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -12.544 13.521 -7.702 19.987 hybrid contribution -0.515 -1.910 -0.109 1.981 sum -13.060 11.611 -7.810 19.141 Atomic orbital electron populations 1.21862 0.90639 1.04655 1.05755 1.21048 0.90944 0.83160 0.75146 1.90771 1.70469 1.31183 1.47440 1.43643 1.05470 1.10071 1.72663 1.17894 0.82621 0.96935 0.95868 1.21032 0.94601 0.99999 0.99662 1.21127 0.92627 0.96470 0.95777 1.20042 0.93664 0.98415 1.02409 1.18081 0.86412 0.81484 0.79478 1.90747 1.71955 1.37995 1.40678 1.45883 1.07466 1.30831 1.51346 1.21381 0.78897 0.96110 1.00434 0.89017 1.20971 0.96116 0.87156 0.94215 1.42357 1.48895 1.04236 1.42109 1.19208 1.18766 0.83928 1.15409 0.91192 1.24741 0.99281 0.98058 0.98722 1.69670 1.29967 1.33978 1.24166 0.86207 0.77257 0.85322 0.77468 1.21735 1.21825 1.20802 1.22023 1.00693 0.94646 0.98724 1.21143 1.01397 0.93737 0.94884 1.21830 0.98493 1.01235 0.97935 1.21867 1.00716 0.99314 0.98427 1.21173 0.94021 0.96580 0.96107 1.20782 0.93921 1.00667 1.01912 0.90229 0.88223 0.88352 0.75096 0.84581 0.84353 0.76283 0.94908 0.95901 0.77937 0.93523 0.91170 0.92027 0.90607 0.94369 0.93870 0.90469 0.93375 0.93264 0.93171 0.84879 0.85178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.72 10.39 36.01 0.37 -0.35 16 2 C 0.51 4.60 7.67 -10.98 -0.08 4.51 16 3 O -0.52 -7.12 14.78 5.56 0.08 -7.03 16 4 N -0.67 -5.59 5.32 -9.86 -0.05 -5.64 16 5 C 0.16 1.88 6.27 -83.73 -0.53 1.35 16 6 C -0.13 -1.77 8.63 -39.46 -0.34 -2.11 16 7 C -0.04 -0.58 9.58 -39.22 -0.38 -0.96 16 8 C -0.14 -2.11 5.88 -104.95 -0.62 -2.73 16 9 C 0.56 9.28 6.32 -12.44 -0.08 9.20 16 10 O -0.53 -9.86 11.30 5.30 0.06 -9.80 16 11 N -0.70 -11.27 4.42 -54.83 -0.24 -11.51 16 12 C 0.14 2.26 2.33 -67.93 -0.16 2.11 16 13 H 0.09 1.72 5.92 -51.93 -0.31 1.42 16 14 C 0.14 2.76 5.82 -4.04 -0.02 2.74 16 15 N -0.73 -17.84 5.43 -59.91 -0.33 -18.17 16 16 C -0.24 -6.58 9.99 -15.06 -0.15 -6.73 16 17 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 18 C -0.01 -0.33 5.50 -17.44 -0.10 -0.43 16 19 N -0.93 -27.61 13.06 55.49 0.72 -26.89 16 20 Si 0.91 22.01 29.55 -169.99 -5.02 16.98 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 24 C -0.12 -1.71 4.36 -26.73 -0.12 -1.82 16 25 C -0.09 -1.32 2.38 -90.62 -0.22 -1.53 16 26 C -0.14 -2.05 8.03 37.15 0.30 -1.75 16 27 C -0.15 -1.77 9.19 37.16 0.34 -1.42 16 28 C -0.06 -0.77 9.53 -39.23 -0.37 -1.15 16 29 C -0.15 -1.71 9.94 -39.45 -0.39 -2.10 16 30 H 0.08 0.14 7.92 -51.93 -0.41 -0.27 16 31 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.41 1.96 8.66 -40.82 -0.35 1.61 16 34 H 0.14 1.83 6.41 -52.49 -0.34 1.49 16 35 H 0.14 1.98 7.64 -52.49 -0.40 1.58 16 36 H 0.40 6.10 6.62 -40.82 -0.27 5.83 16 37 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.39 10.11 7.33 -40.82 -0.30 9.81 16 40 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 41 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.08 1.21 5.19 -51.93 -0.27 0.94 16 44 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.08 1.32 4.75 -51.93 -0.25 1.07 16 47 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 48 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 49 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 50 H 0.13 1.58 6.39 -52.49 -0.34 1.25 16 51 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 407.58 15.07 6.14 6.14 Total: -1.00 -34.14 407.58 -9.02 -43.16 By element: Atomic # 1 Polarization: 23.78 SS G_CDS: -7.85 Total: 15.93 kcal Atomic # 6 Polarization: -0.64 SS G_CDS: -2.53 Total: -3.18 kcal Atomic # 7 Polarization: -62.31 SS G_CDS: 0.10 Total: -62.21 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: 0.14 Total: -16.83 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -34.14 -9.02 -43.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698877467.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.101 kcal (2) G-P(sol) polarization free energy of solvation -34.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds