Wall clock time and date at job start Wed Apr 1 2020 04:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21277 * 119.99972 * 2 1 4 4 N 1.34777 * 119.99813 * 179.97438 * 2 1 3 5 5 C 1.39438 * 119.99734 * 185.27985 * 4 2 1 6 6 C 1.39130 * 119.92945 * 33.53481 * 5 4 2 7 7 C 1.37674 * 120.07454 * 180.02562 * 6 5 4 8 8 C 1.39744 * 119.92596 * 359.97438 * 7 6 5 9 9 C 1.47598 * 120.07258 * 179.97438 * 8 7 6 10 10 O 1.21579 * 119.99965 * 0.02562 * 9 8 7 11 11 N 1.34779 * 119.99763 * 179.97438 * 9 8 7 12 12 C 1.46500 * 119.99796 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.47127 * 35.00142 * 12 11 9 14 14 C 1.52999 * 109.47280 * 155.00043 * 12 11 9 15 15 N 1.46496 * 109.46967 * 305.00354 * 14 12 11 16 16 C 1.36944 * 120.00151 * 179.97438 * 15 14 12 17 17 H 1.08002 * 119.99575 * 359.72711 * 16 15 14 18 18 C 1.38805 * 120.00103 * 179.97438 * 16 15 14 19 19 N 1.31614 * 120.00468 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99684 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47487 * 90.00164 * 20 18 16 22 22 H 1.48498 * 109.47027 * 209.99971 * 20 18 16 23 23 H 1.48497 * 109.47430 * 329.99668 * 20 18 16 24 24 C 1.52996 * 109.47433 * 275.00349 * 12 11 9 25 25 C 1.53009 * 109.47186 * 64.99957 * 24 12 11 26 26 C 1.52991 * 109.46968 * 64.99935 * 25 24 12 27 27 C 1.52996 * 109.46854 * 185.00535 * 25 24 12 28 28 C 1.39746 * 119.85463 * 0.25036 * 8 7 6 29 29 C 1.37670 * 119.92519 * 359.51094 * 28 8 7 30 30 H 1.08996 * 109.46840 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46693 * 299.99822 * 1 2 3 32 32 H 1.08993 * 109.47074 * 59.99765 * 1 2 3 33 33 H 0.96997 * 120.00091 * 5.28262 * 4 2 1 34 34 H 1.07998 * 119.96096 * 0.02724 * 6 5 4 35 35 H 1.08001 * 120.03324 * 179.97438 * 7 6 5 36 36 H 0.96998 * 120.00228 * 0.02562 * 11 9 8 37 37 H 1.08998 * 109.47646 * 184.99943 * 14 12 11 38 38 H 1.08998 * 109.46796 * 65.00115 * 14 12 11 39 39 H 0.96998 * 120.00224 * 0.02562 * 15 14 12 40 40 H 0.97000 * 120.00325 * 179.97438 * 19 18 16 41 41 H 1.08999 * 109.47520 * 185.00077 * 24 12 11 42 42 H 1.09005 * 109.47017 * 305.00102 * 24 12 11 43 43 H 1.09004 * 109.46692 * 305.00003 * 25 24 12 44 44 H 1.09004 * 109.47358 * 60.00477 * 26 25 24 45 45 H 1.09007 * 109.46978 * 179.97438 * 26 25 24 46 46 H 1.08998 * 109.47486 * 300.00175 * 26 25 24 47 47 H 1.08992 * 109.47540 * 59.99678 * 27 25 24 48 48 H 1.09007 * 109.46858 * 180.02562 * 27 25 24 49 49 H 1.09004 * 109.47037 * 299.99257 * 27 25 24 50 50 H 1.08000 * 120.03852 * 179.72205 * 28 8 7 51 51 H 1.08000 * 119.96483 * 180.20873 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5708 -1.1697 0.1116 6 6 4.2079 -0.1973 0.8761 7 6 5.5801 -0.1966 0.9874 8 6 6.3332 -1.1745 0.3320 9 6 7.8045 -1.1764 0.4487 10 8 8.3626 -0.3270 1.1159 11 7 8.5294 -2.1205 -0.1836 12 6 9.9898 -2.1222 -0.0683 13 1 10.2759 -1.7895 0.9295 14 6 10.5185 -3.5383 -0.3047 15 7 9.8586 -4.4661 0.6172 16 6 10.1733 -5.7986 0.5896 17 1 10.9048 -6.1662 -0.1149 18 6 9.5485 -6.6776 1.4635 19 7 8.6539 -6.2304 2.3190 20 14 9.9783 -8.4951 1.4262 21 1 11.1029 -8.7571 2.3599 22 1 8.7956 -9.2920 1.8398 23 1 10.3782 -8.8811 0.0491 24 6 10.5850 -1.1748 -1.1119 25 6 10.1560 0.2607 -0.8011 26 6 10.7628 0.6965 0.5340 27 6 10.6462 1.1912 -1.9122 28 6 5.6905 -2.1469 -0.4388 29 6 4.3177 -2.1449 -0.5420 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.6990 -2.0055 -0.0764 34 1 3.6252 0.5578 1.3827 35 1 6.0739 0.5588 1.5806 36 1 8.0841 -2.7984 -0.7157 37 1 11.5945 -3.5581 -0.1318 38 1 10.3101 -3.8372 -1.3320 39 1 9.1982 -4.1368 1.2467 40 1 8.2170 -6.8447 2.9294 41 1 11.6726 -1.2427 -1.0860 42 1 10.2269 -1.4546 -2.1027 43 1 9.0689 0.3097 -0.7394 44 1 11.8500 0.6475 0.4723 45 1 10.4576 1.7193 0.7552 46 1 10.4136 0.0335 1.3255 47 1 10.2139 0.8807 -2.8634 48 1 10.3410 2.2139 -1.6906 49 1 11.7334 1.1422 -1.9740 50 1 6.2700 -2.9013 -0.9503 51 1 3.8202 -2.8982 -1.1348 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698877467.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:56 Heat of formation + Delta-G solvation = -65.781179 kcal Electronic energy + Delta-G solvation = -30849.923308 eV Core-core repulsion = 26748.224042 eV Total energy + Delta-G solvation = -4101.699266 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.76242 -41.10377 -39.30556 -37.86758 -36.44991 -35.86054 -35.03329 -33.14444 -32.02164 -31.91081 -30.65196 -29.38203 -27.94296 -27.16682 -25.08487 -24.51460 -23.97288 -22.30540 -21.81594 -21.17517 -20.79505 -19.39834 -19.01177 -18.38659 -17.98901 -17.28520 -16.91161 -16.56043 -16.53625 -15.94255 -15.56135 -15.39427 -15.31822 -15.17888 -14.95259 -14.67962 -14.50297 -14.44528 -14.27147 -13.90162 -13.79259 -13.59351 -13.25793 -13.17268 -13.01899 -13.00368 -12.93991 -12.77674 -12.54330 -12.35319 -12.28355 -12.07067 -11.86643 -11.62732 -11.51914 -11.36595 -11.22192 -11.06839 -10.95510 -10.71519 -10.04136 -9.89587 -9.20715 -8.98328 -7.91256 -5.20930 -0.24557 0.35687 1.42054 1.49562 1.51210 1.59235 1.96623 2.07921 2.27834 2.58062 2.88991 3.42631 3.64927 3.69753 3.84475 3.86785 3.93380 4.02329 4.10223 4.26092 4.28209 4.34709 4.40502 4.43744 4.47221 4.54166 4.65552 4.68431 4.81623 4.89221 4.90710 4.93724 4.96512 5.00627 5.04372 5.09862 5.10385 5.17328 5.19154 5.25562 5.32498 5.39304 5.40500 5.53442 5.58831 5.65557 5.69321 5.87879 6.28872 6.38129 6.65784 7.07095 7.33625 7.36434 8.10062 8.34281 9.31454 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007634 B = 0.003242 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3667.037901 B = 8634.067026 C =11679.365262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.503 3.497 3 O -0.575 6.575 4 N -0.660 5.660 5 C 0.167 3.833 6 C -0.144 4.144 7 C -0.052 4.052 8 C -0.164 4.164 9 C 0.554 3.446 10 O -0.560 6.560 11 N -0.701 5.701 12 C 0.146 3.854 13 H 0.066 0.934 14 C 0.145 3.855 15 N -0.742 5.742 16 C -0.242 4.242 17 H 0.078 0.922 18 C -0.073 4.073 19 N -0.967 5.967 20 Si 0.971 3.029 21 H -0.293 1.293 22 H -0.296 1.296 23 H -0.267 1.267 24 C -0.113 4.113 25 C -0.091 4.091 26 C -0.133 4.133 27 C -0.140 4.140 28 C -0.062 4.062 29 C -0.145 4.145 30 H 0.112 0.888 31 H 0.106 0.894 32 H 0.108 0.892 33 H 0.433 0.567 34 H 0.130 0.870 35 H 0.127 0.873 36 H 0.406 0.594 37 H 0.036 0.964 38 H 0.040 0.960 39 H 0.374 0.626 40 H 0.249 0.751 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.055 0.945 44 H 0.051 0.949 45 H 0.039 0.961 46 H 0.049 0.951 47 H 0.057 0.943 48 H 0.049 0.951 49 H 0.062 0.938 50 H 0.143 0.857 51 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.405 11.185 -10.384 20.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.295 3.705 3 O -0.454 6.454 4 N -0.307 5.307 5 C 0.071 3.929 6 C -0.165 4.165 7 C -0.072 4.072 8 C -0.168 4.168 9 C 0.343 3.657 10 O -0.441 6.441 11 N -0.352 5.352 12 C 0.041 3.959 13 H 0.084 0.916 14 C 0.018 3.982 15 N -0.385 5.385 16 C -0.374 4.374 17 H 0.096 0.904 18 C -0.265 4.265 19 N -0.617 5.617 20 Si 0.801 3.199 21 H -0.220 1.220 22 H -0.223 1.223 23 H -0.192 1.192 24 C -0.152 4.152 25 C -0.109 4.109 26 C -0.190 4.190 27 C -0.198 4.198 28 C -0.081 4.081 29 C -0.165 4.165 30 H 0.130 0.870 31 H 0.125 0.875 32 H 0.126 0.874 33 H 0.273 0.727 34 H 0.148 0.852 35 H 0.144 0.856 36 H 0.242 0.758 37 H 0.054 0.946 38 H 0.058 0.942 39 H 0.206 0.794 40 H 0.058 0.942 41 H 0.101 0.899 42 H 0.095 0.905 43 H 0.074 0.926 44 H 0.070 0.930 45 H 0.058 0.942 46 H 0.068 0.932 47 H 0.076 0.924 48 H 0.068 0.932 49 H 0.081 0.919 50 H 0.161 0.839 51 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -13.558 12.367 -9.997 20.898 hybrid contribution -0.238 -1.501 0.580 1.627 sum -13.796 10.867 -9.417 19.927 Atomic orbital electron populations 1.21912 0.86431 1.07090 1.06464 1.22014 0.92827 0.82275 0.73433 1.90757 1.71852 1.33031 1.49735 1.43668 1.04086 1.11205 1.71773 1.18025 0.84411 0.95964 0.94541 1.21039 0.94111 1.00765 1.00551 1.21082 0.93290 0.96555 0.96249 1.19977 0.92638 0.99857 1.04282 1.18390 0.87261 0.81109 0.78943 1.90730 1.72620 1.38996 1.41787 1.45810 1.07218 1.30831 1.51299 1.21199 0.79425 0.95129 1.00108 0.91627 1.21114 0.95834 0.87506 0.93736 1.42526 1.48958 1.04288 1.42749 1.19615 1.17923 0.85144 1.14696 0.90374 1.25523 0.99826 1.02176 0.98991 1.69834 1.31540 1.35049 1.25291 0.85172 0.76435 0.80411 0.77889 1.22034 1.22315 1.19180 1.21959 1.01248 0.93688 0.98268 1.21074 1.00156 0.94416 0.95273 1.21760 0.99253 1.00353 0.97674 1.21804 1.01483 0.98696 0.97767 1.21354 0.95083 0.96073 0.95613 1.21113 0.93186 1.00891 1.01355 0.86978 0.87533 0.87394 0.72704 0.85185 0.85551 0.75785 0.94587 0.94224 0.79357 0.94185 0.89885 0.90534 0.92650 0.93001 0.94165 0.93197 0.92401 0.93167 0.91930 0.83907 0.81637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.91 10.39 71.24 0.74 -0.17 16 2 C 0.50 8.38 7.67 87.66 0.67 9.05 16 3 O -0.58 -15.72 14.78 -3.02 -0.04 -15.76 16 4 N -0.66 -9.62 5.32 -303.48 -1.61 -11.23 16 5 C 0.17 3.71 6.27 38.36 0.24 3.95 16 6 C -0.14 -3.99 8.63 22.35 0.19 -3.80 16 7 C -0.05 -1.60 9.58 22.50 0.22 -1.39 16 8 C -0.16 -5.08 5.88 -20.08 -0.12 -5.20 16 9 C 0.55 19.34 6.32 86.71 0.55 19.89 16 10 O -0.56 -22.05 11.30 -3.96 -0.04 -22.10 16 11 N -0.70 -22.84 4.42 -445.65 -1.97 -24.81 16 12 C 0.15 4.88 2.33 44.99 0.10 4.98 16 13 H 0.07 2.57 5.92 -2.39 -0.01 2.55 16 14 C 0.14 5.46 5.82 86.38 0.50 5.96 16 15 N -0.74 -36.29 5.43 -343.46 -1.87 -38.15 16 16 C -0.24 -13.02 9.99 84.03 0.84 -12.18 16 17 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 18 C -0.07 -4.07 5.50 84.86 0.47 -3.61 16 19 N -0.97 -58.21 13.06 21.65 0.28 -57.93 16 20 Si 0.97 45.09 29.55 68.60 2.03 47.12 16 21 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 22 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 23 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 24 C -0.11 -3.03 4.36 30.60 0.13 -2.89 16 25 C -0.09 -2.53 2.38 -10.79 -0.03 -2.56 16 26 C -0.13 -4.03 8.03 71.98 0.58 -3.45 16 27 C -0.14 -3.16 9.19 71.98 0.66 -2.49 16 28 C -0.06 -1.58 9.53 22.50 0.21 -1.37 16 29 C -0.15 -3.01 9.94 22.35 0.22 -2.79 16 30 H 0.11 -0.08 7.92 -2.39 -0.02 -0.10 16 31 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.43 2.70 8.66 -92.71 -0.80 1.89 16 34 H 0.13 3.71 6.41 -2.91 -0.02 3.69 16 35 H 0.13 4.03 7.64 -2.91 -0.02 4.01 16 36 H 0.41 12.34 6.62 -92.71 -0.61 11.72 16 37 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.37 20.02 7.33 -92.71 -0.68 19.34 16 40 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 41 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 43 H 0.06 1.80 5.19 -2.38 -0.01 1.79 16 44 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 45 H 0.04 1.20 8.14 -2.38 -0.02 1.18 16 46 H 0.05 1.79 4.75 -2.39 -0.01 1.78 16 47 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 48 H 0.05 1.11 8.14 -2.38 -0.02 1.10 16 49 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 50 H 0.14 3.28 6.39 -2.91 -0.02 3.26 16 51 H 0.17 2.21 8.06 -2.91 -0.02 2.19 16 Total: -1.00 -76.13 407.58 1.84 -74.29 By element: Atomic # 1 Polarization: 47.75 SS G_CDS: -1.12 Total: 46.63 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: 6.19 Total: 1.94 kcal Atomic # 7 Polarization: -126.95 SS G_CDS: -5.17 Total: -132.12 kcal Atomic # 8 Polarization: -37.77 SS G_CDS: -0.09 Total: -37.86 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -76.13 1.84 -74.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698877467.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.510 kcal (2) G-P(sol) polarization free energy of solvation -76.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds