Wall clock time and date at job start Wed Apr 1 2020 05:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21285 * 120.00253 * 2 1 4 4 N 1.34780 * 119.99694 * 180.02562 * 2 1 3 5 5 C 1.39951 * 119.99449 * 185.27219 * 4 2 1 6 6 C 1.38998 * 119.99916 * 213.32562 * 5 4 2 7 7 C 1.38209 * 120.22441 * 180.02562 * 6 5 4 8 8 C 1.38016 * 120.22276 * 359.67479 * 7 6 5 9 9 C 1.39575 * 119.99555 * 0.62636 * 8 7 6 10 10 C 1.47858 * 120.11306 * 179.67430 * 9 8 7 11 11 O 1.21557 * 120.00280 * 179.72605 * 10 9 8 12 12 N 1.34774 * 120.00178 * 359.72214 * 10 9 8 13 13 C 1.46496 * 120.00554 * 180.27463 * 12 10 9 14 14 C 1.53001 * 109.47816 * 179.72493 * 13 12 10 15 15 C 1.52991 * 109.47390 * 180.02562 * 14 13 12 16 16 H 1.09001 * 109.47424 * 304.99878 * 15 14 13 17 17 N 1.46502 * 109.47158 * 65.00447 * 15 14 13 18 18 C 1.36943 * 119.99814 * 204.99813 * 17 15 14 19 19 H 1.08001 * 119.99762 * 0.02562 * 18 17 15 20 20 C 1.38806 * 119.99983 * 179.97438 * 18 17 15 21 21 N 1.31628 * 120.00072 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00155 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46985 * 60.00420 * 22 20 18 24 24 H 1.48497 * 109.47093 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47222 * 300.00166 * 22 20 18 26 26 C 1.53006 * 109.47165 * 185.00368 * 15 14 13 27 27 C 1.52992 * 109.47216 * 59.99654 * 26 15 14 28 28 C 1.53001 * 109.47293 * 180.02562 * 26 15 14 29 29 C 1.38597 * 120.00432 * 33.35293 * 5 4 2 30 30 H 1.09005 * 109.47159 * 239.99984 * 1 2 3 31 31 H 1.09007 * 109.46886 * 359.97438 * 1 2 3 32 32 H 1.09001 * 109.47376 * 119.99667 * 1 2 3 33 33 H 0.96991 * 120.00208 * 5.27412 * 4 2 1 34 34 H 1.08001 * 119.88580 * 0.02562 * 6 5 4 35 35 H 1.07999 * 119.88375 * 179.97438 * 7 6 5 36 36 H 1.08007 * 120.00413 * 180.31800 * 8 7 6 37 37 H 0.97006 * 120.00016 * 0.02562 * 12 10 9 38 38 H 1.08997 * 109.47499 * 299.73084 * 13 12 10 39 39 H 1.09001 * 109.46992 * 59.72649 * 13 12 10 40 40 H 1.09004 * 109.46919 * 300.00511 * 14 13 12 41 41 H 1.09001 * 109.46713 * 59.99986 * 14 13 12 42 42 H 0.96995 * 120.00026 * 24.99769 * 17 15 14 43 43 H 0.96991 * 120.00054 * 179.97438 * 21 20 18 44 44 H 1.09009 * 109.46774 * 300.00348 * 26 15 14 45 45 H 1.09001 * 109.47073 * 60.00139 * 27 26 15 46 46 H 1.08999 * 109.47575 * 180.02562 * 27 26 15 47 47 H 1.09007 * 109.47371 * 300.00240 * 27 26 15 48 48 H 1.09000 * 109.47104 * 59.99458 * 28 26 15 49 49 H 1.08999 * 109.46735 * 180.02562 * 28 26 15 50 50 H 1.09001 * 109.46583 * 299.99608 * 28 26 15 51 51 H 1.07995 * 120.10686 * 0.02562 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1673 -0.0005 5 6 3.5759 -1.1698 0.1109 6 6 4.3232 -2.1452 -0.5390 7 6 5.7011 -2.1524 -0.4318 8 6 6.3448 -1.1872 0.3158 9 6 5.6032 -0.2073 0.9774 10 6 6.2897 0.8237 1.7850 11 8 5.6421 1.6792 2.3563 12 7 7.6335 0.8149 1.8877 13 6 8.3133 1.8327 2.6927 14 6 9.8239 1.5934 2.6479 15 6 10.5337 2.6560 3.4891 16 1 10.2405 3.6477 3.1447 17 7 10.1578 2.4965 4.8960 18 6 10.2222 3.5671 5.7475 19 1 10.5498 4.5290 5.3818 20 6 9.8655 3.4161 7.0805 21 7 9.4657 2.2438 7.5261 22 14 9.9540 4.8762 8.2422 23 1 9.0587 5.9544 7.7512 24 1 9.5231 4.4556 9.5996 25 1 11.3499 5.3795 8.2992 26 6 12.0482 2.4932 3.3443 27 6 12.4409 2.6597 1.8750 28 6 12.7582 3.5555 4.1860 29 6 4.2124 -0.2002 0.8696 30 1 -0.3634 -0.5139 0.8900 31 1 -0.3633 1.0277 0.0005 32 1 -0.3634 -0.5138 -0.8900 33 1 1.6990 -2.0054 -0.0781 34 1 3.8254 -2.8999 -1.1298 35 1 6.2763 -2.9130 -0.9387 36 1 7.4221 -1.1932 0.3930 37 1 8.1503 0.1324 1.4316 38 1 8.0901 2.8215 2.2922 39 1 7.9663 1.7716 3.7242 40 1 10.0471 0.6045 3.0484 41 1 10.1709 1.6544 1.6164 42 1 9.8632 1.6327 5.2244 43 1 9.2168 2.1383 8.4576 44 1 12.3416 1.5014 3.6886 45 1 12.1475 3.6514 1.5307 46 1 13.5197 2.5433 1.7717 47 1 11.9351 1.9026 1.2757 48 1 12.4783 3.4364 5.2327 49 1 13.8370 3.4397 4.0825 50 1 12.4648 4.5473 3.8420 51 1 3.6335 0.5579 1.3760 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700714431.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:28 Heat of formation + Delta-G solvation = -45.596299 kcal Electronic energy + Delta-G solvation = -29903.582239 eV Core-core repulsion = 25802.758255 eV Total energy + Delta-G solvation = -4100.823984 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.90386 -39.68477 -38.21482 -37.35975 -35.12207 -34.64587 -33.00802 -31.72151 -31.25524 -30.80379 -29.45243 -28.73958 -26.37666 -25.47042 -23.86214 -23.20726 -22.72294 -21.09316 -20.83981 -20.47636 -19.17660 -18.42907 -17.34132 -17.07799 -16.59055 -16.22731 -15.89886 -15.59759 -15.32112 -14.81600 -14.57911 -14.38784 -13.95381 -13.88864 -13.79870 -13.77439 -13.44654 -13.20355 -13.04241 -12.96813 -12.69072 -12.49637 -12.19229 -11.97464 -11.80501 -11.63825 -11.58517 -11.14471 -10.86022 -10.77317 -10.73541 -10.54213 -10.39941 -10.23246 -10.20611 -10.02596 -9.94698 -9.64150 -9.40259 -9.20109 -8.80181 -8.71841 -8.48048 -6.88143 -5.69845 -2.97333 0.64758 1.05587 2.19976 2.64241 2.93600 3.33723 3.49127 3.54370 3.54545 3.78176 4.30064 4.55796 4.59801 4.65387 4.78403 4.85373 4.89976 4.91265 5.16207 5.21298 5.27570 5.39964 5.41551 5.52952 5.59400 5.63722 5.74298 5.75284 5.92580 5.96428 6.00162 6.06228 6.09668 6.17176 6.21013 6.28584 6.31258 6.43408 6.48165 6.59620 6.66652 6.71182 6.74918 6.79872 6.87125 6.96373 7.16749 7.37234 7.69495 7.73765 7.77652 8.41921 8.48511 9.59825 10.16612 10.51421 11.52663 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012031 B = 0.002220 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2326.711373 B =12607.235138 C =14177.567370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.505 3.495 3 O -0.514 6.514 4 N -0.677 5.677 5 C 0.135 3.865 6 C -0.126 4.126 7 C -0.107 4.107 8 C -0.103 4.103 9 C -0.107 4.107 10 C 0.550 3.450 11 O -0.527 6.527 12 N -0.722 5.722 13 C 0.122 3.878 14 C -0.136 4.136 15 C 0.185 3.815 16 H 0.049 0.951 17 N -0.721 5.721 18 C -0.231 4.231 19 H 0.071 0.929 20 C -0.014 4.014 21 N -0.932 5.932 22 Si 0.901 3.099 23 H -0.286 1.286 24 H -0.292 1.292 25 H -0.287 1.287 26 C -0.111 4.111 27 C -0.147 4.147 28 C -0.140 4.140 29 C -0.065 4.065 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.412 0.588 34 H 0.129 0.871 35 H 0.133 0.867 36 H 0.129 0.871 37 H 0.395 0.605 38 H 0.064 0.936 39 H 0.086 0.914 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.383 0.617 43 H 0.254 0.746 44 H 0.059 0.941 45 H 0.048 0.952 46 H 0.042 0.958 47 H 0.049 0.951 48 H 0.086 0.914 49 H 0.028 0.972 50 H 0.040 0.960 51 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.472 -13.872 -20.902 27.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.293 3.707 3 O -0.388 6.388 4 N -0.323 5.323 5 C 0.042 3.958 6 C -0.147 4.147 7 C -0.125 4.125 8 C -0.122 4.122 9 C -0.110 4.110 10 C 0.336 3.664 11 O -0.404 6.404 12 N -0.374 5.374 13 C 0.000 4.000 14 C -0.174 4.174 15 C 0.075 3.925 16 H 0.067 0.933 17 N -0.362 5.362 18 C -0.362 4.362 19 H 0.089 0.911 20 C -0.209 4.209 21 N -0.581 5.581 22 Si 0.733 3.267 23 H -0.213 1.213 24 H -0.218 1.218 25 H -0.214 1.214 26 C -0.132 4.132 27 C -0.204 4.204 28 C -0.198 4.198 29 C -0.086 4.086 30 H 0.111 0.889 31 H 0.116 0.884 32 H 0.109 0.891 33 H 0.248 0.752 34 H 0.146 0.854 35 H 0.151 0.849 36 H 0.147 0.853 37 H 0.229 0.771 38 H 0.083 0.917 39 H 0.104 0.896 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.217 0.783 43 H 0.064 0.936 44 H 0.078 0.922 45 H 0.067 0.933 46 H 0.061 0.939 47 H 0.068 0.932 48 H 0.105 0.895 49 H 0.047 0.953 50 H 0.059 0.941 51 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -11.579 -12.253 -20.344 26.421 hybrid contribution 0.030 -0.371 0.521 0.640 sum -11.548 -12.623 -19.822 26.185 Atomic orbital electron populations 1.21929 0.90478 1.06219 1.04521 1.21104 0.91051 0.83157 0.75361 1.90833 1.70454 1.31090 1.46446 1.43594 1.05008 1.10044 1.73662 1.17616 0.83000 0.97600 0.97627 1.21030 0.94275 0.99666 0.99729 1.20866 0.93690 0.98795 0.99182 1.21322 0.99950 0.94138 0.96825 1.19936 0.93822 0.97042 1.00246 1.18191 0.82397 0.84686 0.81097 1.90827 1.65432 1.37903 1.46211 1.46014 1.06269 1.32982 1.52110 1.21484 0.91739 0.90301 0.96520 1.22133 0.93640 1.01127 1.00525 1.20185 0.90704 0.95746 0.85909 0.93285 1.42434 1.79097 1.11174 1.03461 1.19147 1.36831 0.90246 0.89980 0.91094 1.24707 1.02346 0.96603 0.97287 1.69642 1.51242 1.22030 1.15163 0.86349 0.77629 0.82228 0.80512 1.21309 1.21847 1.21359 1.21774 0.98643 0.99376 0.93443 1.21936 1.00045 1.00979 0.97487 1.21832 0.97131 0.97541 1.03256 1.21265 0.93581 0.98153 0.95565 0.88892 0.88407 0.89133 0.75227 0.85356 0.84926 0.85319 0.77075 0.91730 0.89596 0.91639 0.91523 0.78307 0.93580 0.92215 0.93277 0.93854 0.93216 0.89480 0.95253 0.94131 0.83418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.79 10.32 36.01 0.37 -0.41 16 2 C 0.51 4.77 7.67 -10.98 -0.08 4.68 16 3 O -0.51 -7.73 14.77 5.55 0.08 -7.65 16 4 N -0.68 -5.08 5.34 -9.89 -0.05 -5.14 16 5 C 0.14 1.40 6.27 -83.74 -0.53 0.88 16 6 C -0.13 -0.98 9.95 -39.31 -0.39 -1.37 16 7 C -0.11 -0.83 10.02 -39.67 -0.40 -1.23 16 8 C -0.10 -1.01 9.54 -39.16 -0.37 -1.39 16 9 C -0.11 -1.46 5.87 -104.99 -0.62 -2.08 16 10 C 0.55 9.36 7.77 -12.32 -0.10 9.27 16 11 O -0.53 -11.49 16.35 5.32 0.09 -11.41 16 12 N -0.72 -10.55 5.51 -61.25 -0.34 -10.89 16 13 C 0.12 2.12 5.56 -4.04 -0.02 2.09 16 14 C -0.14 -2.09 4.65 -26.73 -0.12 -2.22 16 15 C 0.19 3.51 2.02 -67.93 -0.14 3.37 16 16 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 17 N -0.72 -17.24 4.45 -53.42 -0.24 -17.48 16 18 C -0.23 -6.20 7.57 -15.06 -0.11 -6.32 16 19 H 0.07 1.87 7.40 -52.49 -0.39 1.48 16 20 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 21 N -0.93 -28.16 13.06 55.49 0.72 -27.44 16 22 Si 0.90 22.71 29.55 -169.99 -5.02 17.69 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 24 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 C -0.11 -1.90 2.69 -90.62 -0.24 -2.15 16 27 C -0.15 -2.02 8.85 37.15 0.33 -1.69 16 28 C -0.14 -2.61 8.26 37.16 0.31 -2.30 16 29 C -0.06 -0.91 8.20 -38.98 -0.32 -1.23 16 30 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.10 0.52 8.12 -51.93 -0.42 0.10 16 32 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 33 H 0.41 1.35 8.82 -40.82 -0.36 0.99 16 34 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 35 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 36 H 0.13 0.96 6.40 -52.48 -0.34 0.62 16 37 H 0.39 4.30 6.50 -40.82 -0.27 4.03 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.09 1.84 7.75 -51.93 -0.40 1.44 16 40 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.07 0.86 6.18 -51.93 -0.32 0.54 16 42 H 0.38 9.89 7.80 -40.82 -0.32 9.57 16 43 H 0.25 7.54 8.31 -40.82 -0.34 7.21 16 44 H 0.06 1.07 8.14 -51.92 -0.42 0.64 16 45 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.05 0.60 6.32 -51.93 -0.33 0.28 16 48 H 0.09 1.93 6.01 -51.93 -0.31 1.62 16 49 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 50 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 51 H 0.15 2.51 6.01 -52.49 -0.32 2.20 16 LS Contribution 414.16 15.07 6.24 6.24 Total: -1.00 -36.84 414.16 -9.02 -45.86 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: -7.97 Total: 12.80 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: -2.53 Total: -2.59 kcal Atomic # 7 Polarization: -61.04 SS G_CDS: 0.10 Total: -60.94 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: 0.17 Total: -19.06 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -36.84 -9.02 -45.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700714431.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.265 kcal (2) G-P(sol) polarization free energy of solvation -36.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds