Wall clock time and date at job start Wed Apr 1 2020 05:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21285 * 120.00253 * 2 1 4 4 N 1.34780 * 119.99694 * 180.02562 * 2 1 3 5 5 C 1.39951 * 119.99449 * 185.27219 * 4 2 1 6 6 C 1.38998 * 119.99916 * 213.32562 * 5 4 2 7 7 C 1.38209 * 120.22441 * 180.02562 * 6 5 4 8 8 C 1.38016 * 120.22276 * 359.67479 * 7 6 5 9 9 C 1.39575 * 119.99555 * 0.62636 * 8 7 6 10 10 C 1.47858 * 120.11306 * 179.67430 * 9 8 7 11 11 O 1.21557 * 120.00280 * 179.72605 * 10 9 8 12 12 N 1.34774 * 120.00178 * 359.72214 * 10 9 8 13 13 C 1.46496 * 120.00554 * 180.27463 * 12 10 9 14 14 C 1.53001 * 109.47816 * 179.72493 * 13 12 10 15 15 C 1.52991 * 109.47390 * 180.02562 * 14 13 12 16 16 H 1.09001 * 109.47424 * 304.99878 * 15 14 13 17 17 N 1.46502 * 109.47158 * 65.00447 * 15 14 13 18 18 C 1.36943 * 119.99814 * 204.99813 * 17 15 14 19 19 H 1.08001 * 119.99762 * 0.02562 * 18 17 15 20 20 C 1.38806 * 119.99983 * 179.97438 * 18 17 15 21 21 N 1.31628 * 120.00072 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00155 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46985 * 60.00420 * 22 20 18 24 24 H 1.48497 * 109.47093 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47222 * 300.00166 * 22 20 18 26 26 C 1.53006 * 109.47165 * 185.00368 * 15 14 13 27 27 C 1.52992 * 109.47216 * 59.99654 * 26 15 14 28 28 C 1.53001 * 109.47293 * 180.02562 * 26 15 14 29 29 C 1.38597 * 120.00432 * 33.35293 * 5 4 2 30 30 H 1.09005 * 109.47159 * 239.99984 * 1 2 3 31 31 H 1.09007 * 109.46886 * 359.97438 * 1 2 3 32 32 H 1.09001 * 109.47376 * 119.99667 * 1 2 3 33 33 H 0.96991 * 120.00208 * 5.27412 * 4 2 1 34 34 H 1.08001 * 119.88580 * 0.02562 * 6 5 4 35 35 H 1.07999 * 119.88375 * 179.97438 * 7 6 5 36 36 H 1.08007 * 120.00413 * 180.31800 * 8 7 6 37 37 H 0.97006 * 120.00016 * 0.02562 * 12 10 9 38 38 H 1.08997 * 109.47499 * 299.73084 * 13 12 10 39 39 H 1.09001 * 109.46992 * 59.72649 * 13 12 10 40 40 H 1.09004 * 109.46919 * 300.00511 * 14 13 12 41 41 H 1.09001 * 109.46713 * 59.99986 * 14 13 12 42 42 H 0.96995 * 120.00026 * 24.99769 * 17 15 14 43 43 H 0.96991 * 120.00054 * 179.97438 * 21 20 18 44 44 H 1.09009 * 109.46774 * 300.00348 * 26 15 14 45 45 H 1.09001 * 109.47073 * 60.00139 * 27 26 15 46 46 H 1.08999 * 109.47575 * 180.02562 * 27 26 15 47 47 H 1.09007 * 109.47371 * 300.00240 * 27 26 15 48 48 H 1.09000 * 109.47104 * 59.99458 * 28 26 15 49 49 H 1.08999 * 109.46735 * 180.02562 * 28 26 15 50 50 H 1.09001 * 109.46583 * 299.99608 * 28 26 15 51 51 H 1.07995 * 120.10686 * 0.02562 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1673 -0.0005 5 6 3.5759 -1.1698 0.1109 6 6 4.3232 -2.1452 -0.5390 7 6 5.7011 -2.1524 -0.4318 8 6 6.3448 -1.1872 0.3158 9 6 5.6032 -0.2073 0.9774 10 6 6.2897 0.8237 1.7850 11 8 5.6421 1.6792 2.3563 12 7 7.6335 0.8149 1.8877 13 6 8.3133 1.8327 2.6927 14 6 9.8239 1.5934 2.6479 15 6 10.5337 2.6560 3.4891 16 1 10.2405 3.6477 3.1447 17 7 10.1578 2.4965 4.8960 18 6 10.2222 3.5671 5.7475 19 1 10.5498 4.5290 5.3818 20 6 9.8655 3.4161 7.0805 21 7 9.4657 2.2438 7.5261 22 14 9.9540 4.8762 8.2422 23 1 9.0587 5.9544 7.7512 24 1 9.5231 4.4556 9.5996 25 1 11.3499 5.3795 8.2992 26 6 12.0482 2.4932 3.3443 27 6 12.4409 2.6597 1.8750 28 6 12.7582 3.5555 4.1860 29 6 4.2124 -0.2002 0.8696 30 1 -0.3634 -0.5139 0.8900 31 1 -0.3633 1.0277 0.0005 32 1 -0.3634 -0.5138 -0.8900 33 1 1.6990 -2.0054 -0.0781 34 1 3.8254 -2.8999 -1.1298 35 1 6.2763 -2.9130 -0.9387 36 1 7.4221 -1.1932 0.3930 37 1 8.1503 0.1324 1.4316 38 1 8.0901 2.8215 2.2922 39 1 7.9663 1.7716 3.7242 40 1 10.0471 0.6045 3.0484 41 1 10.1709 1.6544 1.6164 42 1 9.8632 1.6327 5.2244 43 1 9.2168 2.1383 8.4576 44 1 12.3416 1.5014 3.6886 45 1 12.1475 3.6514 1.5307 46 1 13.5197 2.5433 1.7717 47 1 11.9351 1.9026 1.2757 48 1 12.4783 3.4364 5.2327 49 1 13.8370 3.4397 4.0825 50 1 12.4648 4.5473 3.8420 51 1 3.6335 0.5579 1.3760 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700714431.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:27 Heat of formation + Delta-G solvation = -73.457978 kcal Electronic energy + Delta-G solvation = -29904.790412 eV Core-core repulsion = 25802.758255 eV Total energy + Delta-G solvation = -4102.032157 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.74444 -40.83964 -39.24670 -38.82761 -36.18346 -35.85405 -34.90734 -32.93833 -32.16469 -31.89884 -31.02404 -29.44386 -27.72704 -27.01458 -25.28279 -24.29314 -23.94099 -22.52436 -21.74974 -21.47791 -20.66256 -19.47654 -19.06450 -18.06849 -17.39275 -17.28200 -16.97911 -16.89028 -16.49043 -16.42734 -15.73981 -15.46471 -15.38687 -15.23698 -15.09679 -14.97793 -14.55226 -14.49298 -14.36959 -13.83220 -13.51742 -13.45476 -13.21514 -13.07010 -12.94019 -12.85038 -12.84258 -12.67814 -12.63288 -12.48505 -12.20476 -12.03327 -11.93064 -11.71630 -11.59467 -11.39943 -11.20588 -11.06469 -11.01078 -10.76919 -10.27238 -9.93114 -9.24086 -8.90852 -7.89006 -5.13521 -0.22036 0.25037 1.44271 1.47153 1.47236 1.51886 1.84784 1.97945 2.16810 2.58269 2.84625 3.43883 3.59958 3.76969 3.88542 3.92487 3.93876 4.09811 4.14676 4.18761 4.26848 4.37345 4.41251 4.47756 4.51974 4.54479 4.63090 4.67731 4.79471 4.81024 4.85157 4.97561 5.03618 5.06019 5.13438 5.22347 5.23503 5.25514 5.26811 5.32765 5.36319 5.39034 5.42537 5.46267 5.57158 5.71930 5.81354 5.91419 6.33755 6.39301 6.49905 7.11671 7.16605 7.40078 8.17542 8.39149 9.34616 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012031 B = 0.002220 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2326.711373 B =12607.235138 C =14177.567370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.496 3.504 3 O -0.583 6.583 4 N -0.660 5.660 5 C 0.125 3.875 6 C -0.105 4.105 7 C -0.095 4.095 8 C -0.096 4.096 9 C -0.135 4.135 10 C 0.543 3.457 11 O -0.593 6.593 12 N -0.702 5.702 13 C 0.133 3.867 14 C -0.118 4.118 15 C 0.177 3.823 16 H 0.037 0.963 17 N -0.730 5.730 18 C -0.212 4.212 19 H 0.074 0.926 20 C -0.081 4.081 21 N -0.971 5.971 22 Si 0.957 3.043 23 H -0.286 1.286 24 H -0.300 1.300 25 H -0.276 1.276 26 C -0.104 4.104 27 C -0.139 4.139 28 C -0.139 4.139 29 C -0.099 4.099 30 H 0.115 0.885 31 H 0.085 0.915 32 H 0.126 0.874 33 H 0.435 0.565 34 H 0.174 0.826 35 H 0.179 0.821 36 H 0.156 0.844 37 H 0.417 0.583 38 H 0.047 0.953 39 H 0.036 0.964 40 H 0.075 0.925 41 H 0.108 0.892 42 H 0.371 0.629 43 H 0.246 0.754 44 H 0.056 0.944 45 H 0.050 0.950 46 H 0.059 0.941 47 H 0.072 0.928 48 H 0.045 0.955 49 H 0.051 0.949 50 H 0.039 0.961 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.495 -17.090 -24.861 31.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.286 3.714 3 O -0.462 6.462 4 N -0.308 5.308 5 C 0.030 3.970 6 C -0.125 4.125 7 C -0.113 4.113 8 C -0.115 4.115 9 C -0.139 4.139 10 C 0.331 3.669 11 O -0.475 6.475 12 N -0.354 5.354 13 C 0.009 3.991 14 C -0.156 4.156 15 C 0.069 3.931 16 H 0.055 0.945 17 N -0.370 5.370 18 C -0.344 4.344 19 H 0.091 0.909 20 C -0.272 4.272 21 N -0.623 5.623 22 Si 0.788 3.212 23 H -0.213 1.213 24 H -0.226 1.226 25 H -0.202 1.202 26 C -0.125 4.125 27 C -0.196 4.196 28 C -0.196 4.196 29 C -0.120 4.120 30 H 0.134 0.866 31 H 0.104 0.896 32 H 0.144 0.856 33 H 0.275 0.725 34 H 0.192 0.808 35 H 0.196 0.804 36 H 0.173 0.827 37 H 0.256 0.744 38 H 0.066 0.934 39 H 0.055 0.945 40 H 0.094 0.906 41 H 0.127 0.873 42 H 0.203 0.797 43 H 0.055 0.945 44 H 0.075 0.925 45 H 0.069 0.931 46 H 0.078 0.922 47 H 0.091 0.909 48 H 0.064 0.936 49 H 0.070 0.930 50 H 0.058 0.942 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -10.564 -15.535 -24.380 30.778 hybrid contribution -0.279 0.569 1.610 1.730 sum -10.843 -14.966 -22.769 29.326 Atomic orbital electron populations 1.21957 0.86479 1.06397 1.07206 1.22076 0.92989 0.82570 0.73716 1.90818 1.72078 1.33582 1.49676 1.43517 1.04192 1.10717 1.72400 1.17796 0.84413 0.97367 0.97380 1.21568 0.94485 0.98637 0.97825 1.21433 0.93969 0.98360 0.97562 1.21639 1.01136 0.93020 0.95740 1.19727 0.93808 0.98089 1.02260 1.18929 0.82784 0.84641 0.80501 1.90782 1.66836 1.40751 1.49134 1.45741 1.05743 1.32713 1.51253 1.21150 0.93398 0.90487 0.94090 1.22007 0.91220 1.00242 1.02155 1.20461 0.92645 0.96429 0.83597 0.94526 1.42611 1.79146 1.09860 1.05378 1.19446 1.33749 0.90958 0.90244 0.90851 1.25393 1.03976 0.98795 0.99082 1.69791 1.53869 1.23835 1.14786 0.85433 0.77905 0.79556 0.78322 1.21298 1.22622 1.20190 1.21624 0.96264 0.98597 0.96050 1.21857 1.01415 1.01954 0.94418 1.21768 0.98814 0.98132 1.00880 1.21087 0.93976 0.99172 0.97795 0.86639 0.89591 0.85605 0.72477 0.80828 0.80354 0.82651 0.74418 0.93439 0.94523 0.90591 0.87348 0.79684 0.94518 0.92543 0.93069 0.92234 0.90880 0.93622 0.92979 0.94196 0.88118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 10.32 71.24 0.74 -0.56 16 2 C 0.50 9.65 7.67 87.66 0.67 10.33 16 3 O -0.58 -19.37 14.77 -3.05 -0.04 -19.41 16 4 N -0.66 -9.16 5.34 -303.59 -1.62 -10.78 16 5 C 0.12 2.47 6.27 38.11 0.24 2.71 16 6 C -0.11 -1.18 9.95 22.45 0.22 -0.96 16 7 C -0.10 -1.01 10.02 22.21 0.22 -0.78 16 8 C -0.10 -1.63 9.54 22.54 0.21 -1.42 16 9 C -0.14 -3.84 5.87 -20.10 -0.12 -3.96 16 10 C 0.54 19.86 7.77 86.79 0.67 20.54 16 11 O -0.59 -28.93 16.35 -3.90 -0.06 -29.00 16 12 N -0.70 -20.86 5.51 -465.97 -2.57 -23.43 16 13 C 0.13 4.80 5.56 86.38 0.48 5.28 16 14 C -0.12 -3.48 4.65 30.59 0.14 -3.34 16 15 C 0.18 6.67 2.02 44.99 0.09 6.76 16 16 H 0.04 1.48 8.08 -2.39 -0.02 1.46 16 17 N -0.73 -36.13 4.45 -322.94 -1.44 -37.56 16 18 C -0.21 -11.76 7.57 84.03 0.64 -11.12 16 19 H 0.07 3.97 7.40 -2.91 -0.02 3.94 16 20 C -0.08 -4.78 5.50 84.86 0.47 -4.32 16 21 N -0.97 -61.37 13.06 21.65 0.28 -61.09 16 22 Si 0.96 48.39 29.55 68.60 2.03 50.42 16 23 H -0.29 -14.27 7.11 99.48 0.71 -13.57 16 24 H -0.30 -15.38 7.11 99.48 0.71 -14.68 16 25 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 26 C -0.10 -3.39 2.69 -10.79 -0.03 -3.42 16 27 C -0.14 -3.27 8.85 71.98 0.64 -2.64 16 28 C -0.14 -5.03 8.26 71.98 0.59 -4.43 16 29 C -0.10 -3.01 8.20 22.66 0.19 -2.82 16 30 H 0.12 0.43 8.14 -2.38 -0.02 0.41 16 31 H 0.09 0.93 8.12 -2.38 -0.02 0.91 16 32 H 0.13 0.13 8.14 -2.39 -0.02 0.11 16 33 H 0.43 1.56 8.82 -92.71 -0.82 0.74 16 34 H 0.17 0.43 8.06 -2.91 -0.02 0.40 16 35 H 0.18 0.39 8.06 -2.91 -0.02 0.37 16 36 H 0.16 1.67 6.40 -2.91 -0.02 1.65 16 37 H 0.42 8.28 6.50 -92.70 -0.60 7.68 16 38 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.04 1.69 7.75 -2.39 -0.02 1.68 16 40 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 41 H 0.11 2.35 6.18 -2.39 -0.01 2.34 16 42 H 0.37 20.02 7.80 -92.71 -0.72 19.30 16 43 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 44 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 45 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 46 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 47 H 0.07 1.40 6.32 -2.38 -0.02 1.38 16 48 H 0.04 2.03 6.01 -2.39 -0.01 2.01 16 49 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 50 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 51 H 0.10 3.99 6.01 -2.91 -0.02 3.97 16 Total: -1.00 -93.11 414.16 1.47 -91.64 By element: Atomic # 1 Polarization: 34.53 SS G_CDS: -1.17 Total: 33.36 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: 6.07 Total: 5.85 kcal Atomic # 7 Polarization: -127.52 SS G_CDS: -5.34 Total: -132.86 kcal Atomic # 8 Polarization: -48.30 SS G_CDS: -0.11 Total: -48.41 kcal Atomic # 14 Polarization: 48.39 SS G_CDS: 2.03 Total: 50.42 kcal Total: -93.11 1.47 -91.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700714431.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.181 kcal (2) G-P(sol) polarization free energy of solvation -93.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds