Wall clock time and date at job start Wed Apr 1 2020 05:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46838 * 2 1 4 4 C 1.52988 * 109.47336 * 120.00187 * 2 1 3 5 5 H 1.08999 * 109.47374 * 304.54786 * 4 2 1 6 6 C 1.50698 * 109.47348 * 64.55103 * 4 2 1 7 7 O 1.21291 * 119.99966 * 27.72790 * 6 4 2 8 8 N 1.34774 * 120.00684 * 207.73267 * 6 4 2 9 9 C 1.46502 * 120.00725 * 185.43027 * 8 6 4 10 10 C 1.52990 * 109.47310 * 179.97438 * 9 8 6 11 11 H 1.09005 * 109.51582 * 60.10583 * 10 9 8 12 12 C 1.53296 * 109.51059 * 180.25390 * 10 9 8 13 13 N 1.47157 * 108.38552 * 172.22702 * 12 10 9 14 14 C 1.36939 * 120.98247 * 129.43811 * 13 12 10 15 15 H 1.07997 * 120.00344 * 328.66410 * 14 13 12 16 16 C 1.38812 * 119.99588 * 148.65692 * 14 13 12 17 17 N 1.31624 * 119.99728 * 167.21365 * 16 14 13 18 18 Si 1.86797 * 120.00335 * 347.21025 * 16 14 13 19 19 H 1.48497 * 109.47020 * 85.69298 * 18 16 14 20 20 H 1.48497 * 109.47291 * 205.69281 * 18 16 14 21 21 H 1.48502 * 109.47175 * 325.69714 * 18 16 14 22 22 C 1.47149 * 118.03539 * 309.46941 * 13 12 10 23 23 C 1.53297 * 108.38819 * 50.53128 * 22 13 12 24 24 O 1.42963 * 109.51463 * 300.00189 * 10 9 8 25 25 C 1.50699 * 109.47396 * 184.54756 * 4 2 1 26 26 C 1.38684 * 120.41837 * 119.72163 * 25 4 2 27 27 C 1.38623 * 118.41997 * 179.78866 * 26 25 4 28 28 C 1.38224 * 119.16451 * 0.50994 * 27 26 25 29 29 N 1.31863 * 120.76127 * 359.72778 * 28 27 26 30 30 C 1.31881 * 121.72342 * 359.97438 * 29 28 27 31 31 H 1.08999 * 109.47423 * 304.39866 * 1 2 3 32 32 H 1.08997 * 109.47103 * 64.39763 * 1 2 3 33 33 H 1.08996 * 109.46949 * 184.39728 * 1 2 3 34 34 H 1.09000 * 109.47063 * 240.00897 * 2 1 3 35 35 H 1.08999 * 109.46756 * 179.97438 * 3 2 1 36 36 H 1.08994 * 109.47365 * 299.99963 * 3 2 1 37 37 H 1.09000 * 109.46561 * 60.00590 * 3 2 1 38 38 H 0.97005 * 119.99494 * 5.42893 * 8 6 4 39 39 H 1.08992 * 109.46608 * 300.00256 * 9 8 6 40 40 H 1.09003 * 109.46806 * 59.99728 * 9 8 6 41 41 H 1.09005 * 109.68401 * 291.94841 * 12 10 9 42 42 H 1.08999 * 109.68303 * 52.50472 * 12 10 9 43 43 H 0.96998 * 120.00086 * 180.02562 * 17 16 14 44 44 H 1.09005 * 109.68195 * 290.80738 * 22 13 12 45 45 H 1.09003 * 109.71440 * 170.27222 * 22 13 12 46 46 H 1.08999 * 109.51226 * 187.77544 * 23 22 13 47 47 H 1.08998 * 109.55499 * 67.64926 * 23 22 13 48 48 H 1.08003 * 120.78712 * 0.02562 * 26 25 4 49 49 H 1.08004 * 120.41651 * 180.21964 * 27 26 25 50 50 H 1.08000 * 119.62274 * 179.70604 * 28 27 26 51 51 H 1.07999 * 119.61517 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2491 5 1 1.6117 -0.2567 2.1373 6 6 1.6319 -2.1708 1.1940 7 8 1.4659 -2.7139 0.1222 8 7 1.4512 -2.8640 2.3357 9 6 1.1714 -4.3011 2.2837 10 6 1.0104 -4.8411 3.7061 11 1 0.1833 -4.3294 4.1984 12 6 0.7238 -6.3461 3.6530 13 7 0.7596 -6.8741 5.0261 14 6 -0.2634 -7.6438 5.5123 15 1 -1.2731 -7.4822 5.1647 16 6 -0.0025 -8.6318 6.4518 17 7 -0.9956 -9.1981 7.1042 18 14 1.7577 -9.1576 6.7902 19 1 2.3577 -8.2542 7.8046 20 1 1.7683 -10.5519 7.3010 21 1 2.5463 -9.0844 5.5341 22 6 1.9267 -6.5500 5.8616 23 6 2.1547 -5.0350 5.8071 24 8 2.2159 -4.6171 4.4412 25 6 3.5428 -0.6244 1.3067 26 6 4.1659 -0.0064 2.3805 27 6 5.5507 0.0555 2.3934 28 6 6.2591 -0.4874 1.3379 29 7 5.6327 -1.0634 0.3306 30 6 4.3171 -1.1456 0.2879 31 1 -0.3634 0.5806 0.8479 32 1 -0.3633 0.4441 -0.9267 33 1 -0.3633 -1.0246 0.0788 34 1 1.8933 -0.5137 -0.8901 35 1 3.1299 1.4426 0.0005 36 1 1.6766 1.9564 -0.8899 37 1 1.6766 1.9563 0.8901 38 1 1.5065 -2.4113 3.1918 39 1 0.2522 -4.4722 1.7235 40 1 1.9975 -4.8146 1.7919 41 1 -0.2616 -6.5171 3.2195 42 1 1.4826 -6.8432 3.0487 43 1 -0.8133 -9.8882 7.7610 44 1 2.8067 -7.0676 5.4797 45 1 1.7386 -6.8561 6.8907 46 1 3.0927 -4.7899 6.3052 47 1 1.3323 -4.5241 6.3077 48 1 3.5862 0.4133 3.1894 49 1 6.0694 0.5262 3.2155 50 1 7.3380 -0.4391 1.3380 51 1 3.8393 -1.6245 -0.5540 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715290362.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:46 Heat of formation + Delta-G solvation = -29.172918 kcal Electronic energy + Delta-G solvation = -31290.548309 eV Core-core repulsion = 27190.436497 eV Total energy + Delta-G solvation = -4100.111813 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.05928 -39.65213 -38.79885 -36.42736 -35.08042 -34.47384 -32.87544 -31.92731 -31.67831 -31.23459 -28.47042 -27.50862 -27.25641 -25.63845 -23.93546 -23.22745 -22.92613 -22.15818 -21.15344 -20.26464 -19.67768 -17.61906 -17.44118 -16.99863 -16.52884 -16.20798 -16.12416 -15.83828 -15.58791 -14.89622 -14.76970 -14.57904 -14.31789 -14.13629 -13.86249 -13.74757 -13.65168 -13.49322 -13.36301 -12.96717 -12.90887 -12.49616 -12.46286 -12.37521 -12.20058 -11.95312 -11.72884 -11.43905 -11.29806 -11.20620 -10.96932 -10.92244 -10.48078 -10.37152 -10.24840 -9.92439 -9.83930 -9.69504 -9.62449 -9.43684 -9.16052 -9.07821 -8.66906 -7.03810 -6.03998 -3.49385 0.78600 0.99303 2.51658 3.06255 3.21206 3.40525 3.42985 3.53413 3.96735 4.12624 4.33054 4.40664 4.42069 4.49655 4.60470 4.67878 4.70982 4.75674 4.81527 5.04401 5.10120 5.16291 5.25316 5.26981 5.29986 5.33746 5.37277 5.50928 5.52579 5.57292 5.63850 5.68345 5.73967 5.79104 5.81197 5.82942 5.89091 5.94045 6.03292 6.06732 6.07729 6.13648 6.36834 6.39697 6.41418 6.44466 6.63470 7.43471 7.51420 7.71852 7.83726 8.12556 8.22116 8.78134 9.58304 9.95529 11.11659 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015833 B = 0.002576 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.018378 B =10868.779651 C =11941.933076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.076 4.076 3 C -0.145 4.145 4 C -0.058 4.058 5 H 0.098 0.902 6 C 0.521 3.479 7 O -0.536 6.536 8 N -0.717 5.717 9 C 0.130 3.870 10 C 0.063 3.937 11 H 0.064 0.936 12 C 0.125 3.875 13 N -0.608 5.608 14 C -0.265 4.265 15 H 0.087 0.913 16 C 0.026 3.974 17 N -0.911 5.911 18 Si 0.894 3.106 19 H -0.286 1.286 20 H -0.302 1.302 21 H -0.271 1.271 22 C 0.084 3.916 23 C 0.050 3.950 24 O -0.386 6.386 25 C -0.123 4.123 26 C -0.066 4.066 27 C -0.171 4.171 28 C 0.095 3.905 29 N -0.481 5.481 30 C 0.114 3.886 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.086 0.914 35 H 0.054 0.946 36 H 0.059 0.941 37 H 0.055 0.945 38 H 0.403 0.597 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.035 0.965 43 H 0.265 0.735 44 H 0.035 0.965 45 H 0.083 0.917 46 H 0.086 0.914 47 H 0.051 0.949 48 H 0.135 0.865 49 H 0.136 0.864 50 H 0.155 0.845 51 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.075 23.690 -9.736 27.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.095 4.095 3 C -0.203 4.203 4 C -0.080 4.080 5 H 0.116 0.884 6 C 0.306 3.694 7 O -0.413 6.413 8 N -0.368 5.368 9 C 0.006 3.994 10 C 0.003 3.997 11 H 0.082 0.918 12 C -0.002 4.002 13 N -0.333 5.333 14 C -0.393 4.393 15 H 0.105 0.895 16 C -0.174 4.174 17 N -0.553 5.553 18 Si 0.725 3.275 19 H -0.214 1.214 20 H -0.230 1.230 21 H -0.196 1.196 22 C -0.041 4.041 23 C -0.028 4.028 24 O -0.305 6.305 25 C -0.125 4.125 26 C -0.092 4.092 27 C -0.191 4.191 28 C -0.062 4.062 29 N -0.189 5.189 30 C -0.043 4.043 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.105 0.895 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.237 0.763 39 H 0.102 0.898 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.053 0.947 43 H 0.075 0.925 44 H 0.053 0.947 45 H 0.101 0.899 46 H 0.104 0.896 47 H 0.069 0.931 48 H 0.153 0.847 49 H 0.154 0.846 50 H 0.172 0.828 51 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 9.546 22.837 -11.150 27.147 hybrid contribution 0.308 -0.039 1.828 1.854 sum 9.854 22.798 -9.322 26.528 Atomic orbital electron populations 1.21866 0.94378 1.02522 1.01895 1.20998 0.96280 0.95687 0.96554 1.21853 1.01068 0.95376 1.01978 1.20342 0.92013 0.93737 1.01889 0.88363 1.20306 0.76826 0.88100 0.84163 1.90705 1.50817 1.70874 1.28916 1.45939 1.72035 1.09959 1.08833 1.21428 1.02275 0.79739 0.95917 1.22856 0.87836 0.98292 0.90725 0.91806 1.21491 1.00772 0.90238 0.87690 1.44312 1.21117 1.59813 1.08065 1.18900 0.87713 1.10302 1.22362 0.89506 1.25372 0.97162 0.96349 0.98495 1.69757 1.30729 1.28472 1.26381 0.86869 0.85798 0.76688 0.78127 1.21393 1.23049 1.19603 1.22128 0.90966 0.93825 0.97201 1.23046 1.01034 0.96443 0.82232 1.87810 1.35784 1.83600 1.23313 1.20388 0.94917 1.00709 0.96490 1.21500 0.94819 0.96001 0.96910 1.22130 0.94716 1.01843 1.00392 1.22833 1.00608 0.93251 0.89463 1.67759 1.10522 1.14744 1.25916 1.22751 0.89108 0.94954 0.97473 0.92759 0.92179 0.91979 0.89531 0.92699 0.92228 0.92597 0.76278 0.89787 0.90773 0.90698 0.94723 0.92547 0.94700 0.89932 0.89635 0.93052 0.84690 0.84640 0.82786 0.82535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.04 37.16 0.34 -0.89 16 2 C -0.08 -0.64 1.96 -90.62 -0.18 -0.82 16 3 C -0.15 -1.00 8.88 37.16 0.33 -0.67 16 4 C -0.06 -0.51 1.98 -92.93 -0.18 -0.69 16 5 H 0.10 0.66 7.93 -51.93 -0.41 0.25 16 6 C 0.52 6.21 5.66 -10.99 -0.06 6.15 16 7 O -0.54 -8.06 15.40 5.55 0.09 -7.98 16 8 N -0.72 -8.46 5.45 -60.30 -0.33 -8.79 16 9 C 0.13 1.79 5.38 -4.05 -0.02 1.77 16 10 C 0.06 0.99 2.87 -26.58 -0.08 0.91 16 11 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 12 C 0.12 2.40 6.02 -3.53 -0.02 2.38 16 13 N -0.61 -14.17 2.80 -171.82 -0.48 -14.65 16 14 C -0.26 -7.25 10.11 -15.06 -0.15 -7.40 16 15 H 0.09 2.53 8.06 -52.49 -0.42 2.11 16 16 C 0.03 0.73 5.35 -17.43 -0.09 0.64 16 17 N -0.91 -27.48 13.97 55.49 0.78 -26.70 16 18 Si 0.89 22.21 24.21 -169.99 -4.12 18.10 16 19 H -0.29 -6.71 6.41 56.52 0.36 -6.35 16 20 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 21 H -0.27 -6.72 6.55 56.52 0.37 -6.34 16 22 C 0.08 1.79 4.35 -3.53 -0.02 1.77 16 23 C 0.05 0.86 6.99 37.31 0.26 1.12 16 24 O -0.39 -6.44 10.13 -35.23 -0.36 -6.79 16 25 C -0.12 -1.14 3.30 -104.48 -0.34 -1.49 16 26 C -0.07 -0.52 9.81 -39.27 -0.39 -0.90 16 27 C -0.17 -1.30 10.11 -39.44 -0.40 -1.70 16 28 C 0.10 0.87 11.18 -17.54 -0.20 0.67 16 29 N -0.48 -5.65 10.36 -13.25 -0.14 -5.79 16 30 C 0.11 1.29 10.04 -17.55 -0.18 1.11 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.63 6.84 -51.93 -0.35 0.28 16 34 H 0.09 0.86 7.13 -51.93 -0.37 0.49 16 35 H 0.05 0.41 7.08 -51.93 -0.37 0.05 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.40 4.11 8.35 -40.82 -0.34 3.77 16 39 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 40 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 41 H 0.07 1.39 7.96 -51.93 -0.41 0.98 16 42 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 44 H 0.04 0.76 6.74 -51.93 -0.35 0.41 16 45 H 0.08 1.87 4.65 -51.93 -0.24 1.63 16 46 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 47 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 48 H 0.14 0.73 8.00 -52.48 -0.42 0.31 16 49 H 0.14 0.67 8.06 -52.48 -0.42 0.25 16 50 H 0.15 1.01 8.06 -52.49 -0.42 0.58 16 51 H 0.16 1.84 7.55 -52.49 -0.40 1.44 16 LS Contribution 401.52 15.07 6.05 6.05 Total: -1.00 -33.19 401.52 -8.25 -41.44 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -8.37 Total: 3.14 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: -1.38 Total: 1.97 kcal Atomic # 7 Polarization: -55.76 SS G_CDS: -0.17 Total: -55.93 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: -0.27 Total: -14.77 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.12 Total: 18.10 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.19 -8.25 -41.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715290362.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.268 kcal (2) G-P(sol) polarization free energy of solvation -33.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds