Wall clock time and date at job start Wed Apr 1 2020 05:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46838 * 2 1 4 4 C 1.52988 * 109.47336 * 120.00187 * 2 1 3 5 5 H 1.08999 * 109.47374 * 304.54786 * 4 2 1 6 6 C 1.50698 * 109.47348 * 64.55103 * 4 2 1 7 7 O 1.21291 * 119.99966 * 27.72790 * 6 4 2 8 8 N 1.34774 * 120.00684 * 207.73267 * 6 4 2 9 9 C 1.46502 * 120.00725 * 185.43027 * 8 6 4 10 10 C 1.52990 * 109.47310 * 179.97438 * 9 8 6 11 11 H 1.09005 * 109.51582 * 60.10583 * 10 9 8 12 12 C 1.53296 * 109.51059 * 180.25390 * 10 9 8 13 13 N 1.47157 * 108.38552 * 172.22702 * 12 10 9 14 14 C 1.36939 * 120.98247 * 129.43811 * 13 12 10 15 15 H 1.07997 * 120.00344 * 328.66410 * 14 13 12 16 16 C 1.38812 * 119.99588 * 148.65692 * 14 13 12 17 17 N 1.31624 * 119.99728 * 167.21365 * 16 14 13 18 18 Si 1.86797 * 120.00335 * 347.21025 * 16 14 13 19 19 H 1.48497 * 109.47020 * 85.69298 * 18 16 14 20 20 H 1.48497 * 109.47291 * 205.69281 * 18 16 14 21 21 H 1.48502 * 109.47175 * 325.69714 * 18 16 14 22 22 C 1.47149 * 118.03539 * 309.46941 * 13 12 10 23 23 C 1.53297 * 108.38819 * 50.53128 * 22 13 12 24 24 O 1.42963 * 109.51463 * 300.00189 * 10 9 8 25 25 C 1.50699 * 109.47396 * 184.54756 * 4 2 1 26 26 C 1.38684 * 120.41837 * 119.72163 * 25 4 2 27 27 C 1.38623 * 118.41997 * 179.78866 * 26 25 4 28 28 C 1.38224 * 119.16451 * 0.50994 * 27 26 25 29 29 N 1.31863 * 120.76127 * 359.72778 * 28 27 26 30 30 C 1.31881 * 121.72342 * 359.97438 * 29 28 27 31 31 H 1.08999 * 109.47423 * 304.39866 * 1 2 3 32 32 H 1.08997 * 109.47103 * 64.39763 * 1 2 3 33 33 H 1.08996 * 109.46949 * 184.39728 * 1 2 3 34 34 H 1.09000 * 109.47063 * 240.00897 * 2 1 3 35 35 H 1.08999 * 109.46756 * 179.97438 * 3 2 1 36 36 H 1.08994 * 109.47365 * 299.99963 * 3 2 1 37 37 H 1.09000 * 109.46561 * 60.00590 * 3 2 1 38 38 H 0.97005 * 119.99494 * 5.42893 * 8 6 4 39 39 H 1.08992 * 109.46608 * 300.00256 * 9 8 6 40 40 H 1.09003 * 109.46806 * 59.99728 * 9 8 6 41 41 H 1.09005 * 109.68401 * 291.94841 * 12 10 9 42 42 H 1.08999 * 109.68303 * 52.50472 * 12 10 9 43 43 H 0.96998 * 120.00086 * 180.02562 * 17 16 14 44 44 H 1.09005 * 109.68195 * 290.80738 * 22 13 12 45 45 H 1.09003 * 109.71440 * 170.27222 * 22 13 12 46 46 H 1.08999 * 109.51226 * 187.77544 * 23 22 13 47 47 H 1.08998 * 109.55499 * 67.64926 * 23 22 13 48 48 H 1.08003 * 120.78712 * 0.02562 * 26 25 4 49 49 H 1.08004 * 120.41651 * 180.21964 * 27 26 25 50 50 H 1.08000 * 119.62274 * 179.70604 * 28 27 26 51 51 H 1.07999 * 119.61517 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2491 5 1 1.6117 -0.2567 2.1373 6 6 1.6319 -2.1708 1.1940 7 8 1.4659 -2.7139 0.1222 8 7 1.4512 -2.8640 2.3357 9 6 1.1714 -4.3011 2.2837 10 6 1.0104 -4.8411 3.7061 11 1 0.1833 -4.3294 4.1984 12 6 0.7238 -6.3461 3.6530 13 7 0.7596 -6.8741 5.0261 14 6 -0.2634 -7.6438 5.5123 15 1 -1.2731 -7.4822 5.1647 16 6 -0.0025 -8.6318 6.4518 17 7 -0.9956 -9.1981 7.1042 18 14 1.7577 -9.1576 6.7902 19 1 2.3577 -8.2542 7.8046 20 1 1.7683 -10.5519 7.3010 21 1 2.5463 -9.0844 5.5341 22 6 1.9267 -6.5500 5.8616 23 6 2.1547 -5.0350 5.8071 24 8 2.2159 -4.6171 4.4412 25 6 3.5428 -0.6244 1.3067 26 6 4.1659 -0.0064 2.3805 27 6 5.5507 0.0555 2.3934 28 6 6.2591 -0.4874 1.3379 29 7 5.6327 -1.0634 0.3306 30 6 4.3171 -1.1456 0.2879 31 1 -0.3634 0.5806 0.8479 32 1 -0.3633 0.4441 -0.9267 33 1 -0.3633 -1.0246 0.0788 34 1 1.8933 -0.5137 -0.8901 35 1 3.1299 1.4426 0.0005 36 1 1.6766 1.9564 -0.8899 37 1 1.6766 1.9563 0.8901 38 1 1.5065 -2.4113 3.1918 39 1 0.2522 -4.4722 1.7235 40 1 1.9975 -4.8146 1.7919 41 1 -0.2616 -6.5171 3.2195 42 1 1.4826 -6.8432 3.0487 43 1 -0.8133 -9.8882 7.7610 44 1 2.8067 -7.0676 5.4797 45 1 1.7386 -6.8561 6.8907 46 1 3.0927 -4.7899 6.3052 47 1 1.3323 -4.5241 6.3077 48 1 3.5862 0.4133 3.1894 49 1 6.0694 0.5262 3.2155 50 1 7.3380 -0.4391 1.3380 51 1 3.8393 -1.6245 -0.5540 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715290362.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:45 Heat of formation + Delta-G solvation = -52.613084 kcal Electronic energy + Delta-G solvation = -31291.564751 eV Core-core repulsion = 27190.436497 eV Total energy + Delta-G solvation = -4101.128255 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.83353 -40.65387 -40.08097 -37.22602 -36.59694 -35.77866 -33.71970 -33.54740 -32.80630 -32.33183 -29.65112 -28.75444 -27.90867 -27.04569 -24.86891 -24.60651 -23.91818 -23.31743 -22.13375 -21.66700 -20.54447 -19.01577 -18.45203 -18.10722 -17.75904 -17.31537 -17.21482 -17.03998 -16.59991 -15.97705 -15.90166 -15.78774 -15.68442 -15.34526 -15.21253 -14.95951 -14.60134 -14.43415 -14.25824 -13.96051 -13.93887 -13.61682 -13.55862 -13.50802 -13.28341 -13.01794 -12.98891 -12.80959 -12.40453 -12.36623 -12.11352 -12.07762 -11.84684 -11.62698 -11.60936 -11.39559 -11.14445 -11.08559 -10.65480 -10.54771 -10.38766 -10.11725 -9.87635 -8.94558 -8.22076 -5.63996 0.11549 0.35913 1.23578 1.38082 1.46135 1.59532 2.10894 2.34879 2.65894 2.84966 3.02435 3.14801 3.46323 3.65500 3.69830 3.77247 3.88543 3.95414 4.02694 4.07696 4.11438 4.14140 4.22786 4.24881 4.31429 4.41018 4.47448 4.51975 4.54932 4.65748 4.66269 4.71325 4.75391 4.81951 4.85187 4.85532 4.89946 5.01100 5.02228 5.09925 5.20216 5.24802 5.27416 5.33754 5.42717 5.46766 5.78027 5.78564 6.06236 6.15928 6.52846 6.78924 7.03293 7.21027 7.49052 7.91196 8.97292 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015833 B = 0.002576 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.018378 B =10868.779651 C =11941.933076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.075 4.075 3 C -0.138 4.138 4 C -0.048 4.048 5 H 0.130 0.870 6 C 0.519 3.481 7 O -0.573 6.573 8 N -0.711 5.711 9 C 0.140 3.860 10 C 0.079 3.921 11 H 0.071 0.929 12 C 0.118 3.882 13 N -0.623 5.623 14 C -0.253 4.253 15 H 0.056 0.944 16 C -0.031 4.031 17 N -0.958 5.958 18 Si 0.954 3.046 19 H -0.261 1.261 20 H -0.311 1.311 21 H -0.271 1.271 22 C 0.075 3.925 23 C 0.060 3.940 24 O -0.383 6.383 25 C -0.124 4.124 26 C -0.063 4.063 27 C -0.163 4.163 28 C 0.080 3.920 29 N -0.516 5.516 30 C 0.091 3.909 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.037 0.963 34 H 0.061 0.939 35 H 0.046 0.954 36 H 0.062 0.938 37 H 0.074 0.926 38 H 0.414 0.586 39 H 0.087 0.913 40 H 0.060 0.940 41 H 0.072 0.928 42 H 0.033 0.967 43 H 0.264 0.736 44 H 0.033 0.967 45 H 0.068 0.932 46 H 0.121 0.879 47 H 0.058 0.942 48 H 0.169 0.831 49 H 0.169 0.831 50 H 0.174 0.826 51 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.892 26.888 -8.296 30.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.094 4.094 3 C -0.195 4.195 4 C -0.070 4.070 5 H 0.148 0.852 6 C 0.306 3.694 7 O -0.452 6.452 8 N -0.362 5.362 9 C 0.016 3.984 10 C 0.020 3.980 11 H 0.089 0.911 12 C -0.008 4.008 13 N -0.349 5.349 14 C -0.382 4.382 15 H 0.073 0.927 16 C -0.226 4.226 17 N -0.603 5.603 18 Si 0.784 3.216 19 H -0.187 1.187 20 H -0.240 1.240 21 H -0.196 1.196 22 C -0.049 4.049 23 C -0.018 4.018 24 O -0.302 6.302 25 C -0.126 4.126 26 C -0.089 4.089 27 C -0.183 4.183 28 C -0.076 4.076 29 N -0.225 5.225 30 C -0.066 4.066 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.057 0.943 34 H 0.079 0.921 35 H 0.065 0.935 36 H 0.081 0.919 37 H 0.093 0.907 38 H 0.251 0.749 39 H 0.105 0.895 40 H 0.078 0.922 41 H 0.091 0.909 42 H 0.051 0.949 43 H 0.073 0.927 44 H 0.051 0.949 45 H 0.086 0.914 46 H 0.139 0.861 47 H 0.076 0.924 48 H 0.187 0.813 49 H 0.186 0.814 50 H 0.192 0.808 51 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 11.389 26.091 -9.717 30.081 hybrid contribution -0.272 -1.005 1.293 1.661 sum 11.118 25.085 -8.423 28.702 Atomic orbital electron populations 1.21842 0.94149 1.01353 1.03029 1.20957 0.96372 0.96526 0.95512 1.21782 1.00464 0.94138 1.03095 1.20348 0.91976 0.91353 1.03315 0.85181 1.20892 0.75762 0.89315 0.83386 1.90694 1.52264 1.71943 1.30336 1.45837 1.71849 1.08978 1.09534 1.21167 1.01913 0.81030 0.94322 1.22634 0.87979 0.95630 0.91793 0.91062 1.21658 1.00795 0.92647 0.85691 1.44431 1.20798 1.59748 1.09944 1.18831 0.87746 1.10334 1.21333 0.92656 1.26013 1.00869 0.96781 0.98971 1.69891 1.32887 1.29717 1.27831 0.85883 0.81292 0.76026 0.78448 1.18678 1.24009 1.19605 1.22238 0.89655 0.97174 0.95882 1.23017 1.03224 0.92921 0.82628 1.87834 1.35932 1.83093 1.23295 1.20377 0.94763 1.00932 0.96571 1.21912 0.95272 0.94930 0.96805 1.22508 0.94822 1.00526 1.00402 1.23300 1.01810 0.93069 0.89452 1.67681 1.10914 1.16227 1.27673 1.22576 0.89503 0.96469 0.98044 0.90797 0.91775 0.94350 0.92084 0.93509 0.91860 0.90733 0.74930 0.89537 0.92211 0.90903 0.94870 0.92713 0.94938 0.91383 0.86076 0.92373 0.81342 0.81374 0.80845 0.84740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.04 71.98 0.65 -1.56 16 2 C -0.07 -1.17 1.96 -10.80 -0.02 -1.19 16 3 C -0.14 -1.58 8.88 71.98 0.64 -0.94 16 4 C -0.05 -0.75 1.98 -12.29 -0.02 -0.77 16 5 H 0.13 1.19 7.93 -2.39 -0.02 1.17 16 6 C 0.52 11.90 5.66 87.66 0.50 12.39 16 7 O -0.57 -17.63 15.40 -3.06 -0.05 -17.67 16 8 N -0.71 -15.37 5.45 -463.07 -2.52 -17.89 16 9 C 0.14 3.70 5.38 86.38 0.46 4.16 16 10 C 0.08 2.35 2.87 30.69 0.09 2.44 16 11 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 12 C 0.12 4.47 6.02 86.35 0.52 4.99 16 13 N -0.62 -28.68 2.80 -697.52 -1.95 -30.63 16 14 C -0.25 -14.08 10.11 84.03 0.85 -13.23 16 15 H 0.06 3.36 8.06 -2.91 -0.02 3.34 16 16 C -0.03 -1.79 5.35 84.86 0.45 -1.34 16 17 N -0.96 -59.23 13.97 21.65 0.30 -58.92 16 18 Si 0.95 45.96 24.21 68.60 1.66 47.62 16 19 H -0.26 -11.38 6.41 99.48 0.64 -10.74 16 20 H -0.31 -15.32 7.11 99.48 0.71 -14.61 16 21 H -0.27 -12.88 6.55 99.48 0.65 -12.23 16 22 C 0.08 3.03 4.35 86.36 0.38 3.41 16 23 C 0.06 1.82 6.99 72.08 0.50 2.32 16 24 O -0.38 -11.52 10.13 -148.98 -1.51 -13.03 16 25 C -0.12 -2.08 3.30 -19.77 -0.07 -2.14 16 26 C -0.06 -0.74 9.81 22.47 0.22 -0.52 16 27 C -0.16 -1.87 10.11 22.36 0.23 -1.65 16 28 C 0.08 1.31 11.18 84.68 0.95 2.26 16 29 N -0.52 -12.04 10.36 -195.84 -2.03 -14.07 16 30 C 0.09 2.06 10.04 84.67 0.85 2.91 16 31 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.04 0.76 6.84 -2.39 -0.02 0.75 16 34 H 0.06 1.27 7.13 -2.39 -0.02 1.25 16 35 H 0.05 0.63 7.08 -2.39 -0.02 0.61 16 36 H 0.06 0.68 8.14 -2.39 -0.02 0.67 16 37 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.41 7.05 8.35 -92.70 -0.77 6.28 16 39 H 0.09 2.25 8.14 -2.39 -0.02 2.24 16 40 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.07 2.74 7.96 -2.38 -0.02 2.72 16 42 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 44 H 0.03 1.34 6.74 -2.38 -0.02 1.32 16 45 H 0.07 2.94 4.65 -2.39 -0.01 2.93 16 46 H 0.12 2.89 8.14 -2.39 -0.02 2.87 16 47 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 48 H 0.17 0.82 8.00 -2.91 -0.02 0.79 16 49 H 0.17 0.80 8.06 -2.91 -0.02 0.78 16 50 H 0.17 1.91 8.06 -2.91 -0.02 1.89 16 51 H 0.14 3.48 7.55 -2.91 -0.02 3.45 16 Total: -1.00 -74.99 401.52 1.11 -73.88 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: 0.03 Total: 19.20 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: 7.17 Total: 11.54 kcal Atomic # 7 Polarization: -115.33 SS G_CDS: -6.20 Total: -121.53 kcal Atomic # 8 Polarization: -29.15 SS G_CDS: -1.56 Total: -30.71 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 1.66 Total: 47.62 kcal Total: -74.99 1.11 -73.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715290362.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.269 kcal (2) G-P(sol) polarization free energy of solvation -74.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds