Wall clock time and date at job start Wed Apr 1 2020 04:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47542 * 4.92489 * 3 2 1 5 5 C 1.52995 * 109.47418 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.47347 * 179.97438 * 5 4 3 7 7 O 1.21277 * 119.99815 * 0.02562 * 6 5 4 8 8 N 1.34778 * 120.00026 * 180.02562 * 6 5 4 9 9 C 1.47153 * 125.59886 * 359.97438 * 8 6 5 10 10 C 1.54630 * 107.34079 * 179.08575 * 9 8 6 11 11 C 1.53458 * 102.74303 * 339.33976 * 10 9 8 12 12 C 1.52920 * 112.19679 * 154.98835 * 11 10 9 13 13 C 1.54375 * 104.67011 * 142.09911 * 12 11 10 14 14 N 1.48042 * 107.02442 * 2.24408 * 13 12 11 15 15 C 1.46905 * 111.00046 * 214.47809 * 14 13 12 16 16 C 1.50700 * 109.46959 * 176.62533 * 15 14 13 17 17 O 1.21297 * 120.00048 * 6.13557 * 16 15 14 18 18 N 1.34778 * 119.99889 * 186.14372 * 16 15 14 19 19 C 1.37101 * 119.99885 * 179.97438 * 18 16 15 20 20 H 1.07998 * 119.99906 * 359.97438 * 19 18 16 21 21 C 1.38946 * 119.99723 * 179.97438 * 19 18 16 22 22 N 1.31416 * 120.00363 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99862 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.46997 * 60.00369 * 23 21 19 25 25 H 1.48498 * 109.46952 * 179.97438 * 23 21 19 26 26 H 1.48492 * 109.46920 * 299.99653 * 23 21 19 27 27 C 1.48852 * 106.07056 * 335.14512 * 14 13 12 28 28 C 1.47753 * 125.59798 * 179.97438 * 8 6 5 29 29 H 4.44652 * 5.63365 * 179.97438 * 4 1 2 30 30 H 1.09004 * 109.47047 * 244.92666 * 3 2 1 31 31 H 1.08997 * 109.46760 * 124.92722 * 3 2 1 32 32 H 1.09004 * 109.46805 * 60.00029 * 4 3 2 33 33 H 1.09004 * 109.47337 * 300.00281 * 4 3 2 34 34 H 1.09004 * 109.46982 * 60.00292 * 5 4 3 35 35 H 1.09004 * 109.47222 * 300.00506 * 5 4 3 36 36 H 1.09005 * 109.86814 * 59.64928 * 9 8 6 37 37 H 1.08994 * 109.87360 * 298.52798 * 9 8 6 38 38 H 1.08999 * 110.75947 * 221.02451 * 10 9 8 39 39 H 1.09004 * 110.75439 * 97.65258 * 10 9 8 40 40 H 1.08999 * 110.39413 * 23.30483 * 12 11 10 41 41 H 1.08996 * 110.49405 * 260.94960 * 12 11 10 42 42 H 1.09011 * 109.92423 * 242.90105 * 13 12 11 43 43 H 1.08998 * 110.09524 * 121.68301 * 13 12 11 44 44 H 1.08998 * 109.47198 * 296.61859 * 15 14 13 45 45 H 1.08997 * 109.47110 * 56.62298 * 15 14 13 46 46 H 0.97002 * 119.99866 * 359.97438 * 18 16 15 47 47 H 0.96996 * 120.00096 * 180.02562 * 22 21 19 48 48 H 1.08999 * 110.69105 * 155.74323 * 27 14 13 49 49 H 1.09004 * 110.69413 * 278.93903 * 27 14 13 50 50 H 1.08994 * 110.40197 * 83.54426 * 28 8 6 51 51 H 1.09004 * 110.39393 * 321.13600 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1567 -1.4363 -0.1238 5 6 4.6867 -1.4355 -0.1245 6 6 5.1897 -2.8509 -0.2458 7 8 4.4021 -3.7697 -0.3245 8 7 6.5149 -3.0956 -0.2668 9 6 7.5752 -2.0789 -0.1803 10 6 8.9307 -2.8220 -0.2202 11 6 8.5478 -4.2473 0.2001 12 6 9.5337 -5.2900 -0.3283 13 6 9.6613 -6.3214 0.8132 14 7 8.7429 -5.8903 1.8914 15 6 9.2987 -6.2065 3.2140 16 6 8.3778 -5.6803 4.2846 17 8 7.3068 -5.1988 3.9805 18 7 8.7443 -5.7447 5.5800 19 6 7.9067 -5.2655 6.5540 20 1 6.9535 -4.8362 6.2832 21 6 8.2844 -5.3323 7.8895 22 7 9.4445 -5.8543 8.2190 23 14 7.1435 -4.6789 9.2165 24 1 5.8562 -5.4176 9.1704 25 1 7.7740 -4.8668 10.5478 26 1 6.8934 -3.2334 8.9864 27 6 8.5699 -4.4216 1.7227 28 6 7.1417 -4.4288 -0.3806 29 1 -1.0498 -0.0005 0.0002 30 1 3.0091 0.4363 0.9309 31 1 3.0090 0.5892 -0.8426 32 1 2.7936 -1.8719 -1.0547 33 1 2.7936 -2.0248 0.7187 34 1 5.0502 -0.9997 0.8062 35 1 5.0494 -0.8470 -0.9673 36 1 7.4831 -1.5262 0.7547 37 1 7.5026 -1.3949 -1.0258 38 1 9.6320 -2.3849 0.4906 39 1 9.3456 -2.8147 -1.2281 40 1 10.4999 -4.8293 -0.5338 41 1 9.1412 -5.7650 -1.2274 42 1 10.6863 -6.3404 1.1838 43 1 9.3770 -7.3115 0.4569 44 1 9.3968 -7.2870 3.3181 45 1 10.2789 -5.7410 3.3169 46 1 9.6007 -6.1300 5.8232 47 1 9.7079 -5.9013 9.1513 48 1 7.6285 -4.0917 2.1619 49 1 9.4101 -3.8820 2.1599 50 1 7.1987 -4.7339 -1.4254 51 1 6.5824 -5.1622 0.2003 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716730153.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:11 Heat of formation + Delta-G solvation = -16.272297 kcal Electronic energy + Delta-G solvation = -30681.586493 eV Core-core repulsion = 26582.034093 eV Total energy + Delta-G solvation = -4099.552400 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.68707 -39.15460 -38.00113 -36.29085 -35.65997 -33.92561 -32.74057 -32.21889 -31.20831 -30.22437 -29.07388 -28.09564 -27.08031 -25.33130 -24.20702 -22.93169 -22.20908 -21.08879 -19.47258 -19.22549 -19.10752 -18.27329 -17.83988 -16.94152 -16.43192 -16.03737 -15.64764 -15.34658 -15.15740 -15.03769 -14.57580 -14.37210 -14.15793 -14.00272 -13.78898 -13.74663 -13.22904 -12.99411 -12.78239 -12.74859 -12.43055 -12.41899 -12.13251 -11.91390 -11.82014 -11.71326 -11.61534 -11.46262 -11.16003 -11.14415 -10.97252 -10.79867 -10.57197 -10.50362 -10.42851 -10.39666 -10.26718 -10.20938 -9.76252 -9.46861 -8.61791 -8.40343 -8.00561 -7.90823 -6.41258 -3.81952 2.60819 2.67358 2.70098 2.99639 3.20356 3.25939 3.30626 3.91364 4.01990 4.15636 4.19981 4.34076 4.37677 4.52627 4.65854 4.79101 4.83092 4.88602 4.98692 5.12228 5.14754 5.20205 5.23807 5.25743 5.28961 5.37795 5.41222 5.49738 5.56097 5.62150 5.66586 5.73377 5.78021 5.80847 5.84674 5.88339 5.94763 5.95746 6.04164 6.08715 6.12740 6.22009 6.28081 6.28729 6.57504 7.18148 7.26979 7.45336 7.53179 7.55540 8.06666 8.21875 8.62521 9.18751 9.54868 10.07034 10.76477 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007245 B = 0.002972 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3863.669724 B = 9420.474733 C =12602.478889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.184 4.184 3 C -0.014 4.014 4 C -0.100 4.100 5 C -0.136 4.136 6 C 0.528 3.472 7 O -0.537 6.537 8 N -0.618 5.618 9 C 0.101 3.899 10 C -0.119 4.119 11 C -0.079 4.079 12 C -0.112 4.112 13 C 0.032 3.968 14 N -0.495 5.495 15 C 0.038 3.962 16 C 0.442 3.558 17 O -0.576 6.576 18 N -0.564 5.564 19 C -0.298 4.298 20 H 0.102 0.898 21 C 0.022 3.978 22 N -0.903 5.903 23 Si 0.930 3.070 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.274 1.274 27 C 0.058 3.942 28 C 0.128 3.872 29 H 0.216 0.784 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.043 0.957 43 H 0.078 0.922 44 H 0.090 0.910 45 H 0.047 0.953 46 H 0.392 0.608 47 H 0.272 0.728 48 H 0.108 0.892 49 H 0.040 0.960 50 H 0.063 0.937 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.299 9.728 -19.885 22.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.184 4.184 3 C -0.050 4.050 4 C -0.138 4.138 5 C -0.176 4.176 6 C 0.317 3.683 7 O -0.414 6.414 8 N -0.353 5.353 9 C -0.022 4.022 10 C -0.157 4.157 11 C -0.081 4.081 12 C -0.151 4.151 13 C -0.096 4.096 14 N -0.219 5.219 15 C -0.094 4.094 16 C 0.227 3.773 17 O -0.460 6.460 18 N -0.201 5.201 19 C -0.428 4.428 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.544 5.544 23 Si 0.757 3.243 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.069 4.069 28 C 0.006 3.994 29 H 0.233 0.767 30 H 0.107 0.893 31 H 0.104 0.896 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.115 0.885 35 H 0.110 0.890 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.103 0.897 39 H 0.097 0.903 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.061 0.939 43 H 0.097 0.903 44 H 0.108 0.892 45 H 0.065 0.935 46 H 0.225 0.775 47 H 0.082 0.918 48 H 0.126 0.874 49 H 0.058 0.942 50 H 0.081 0.919 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.342 9.267 -19.949 22.038 hybrid contribution 0.859 0.425 1.116 1.471 sum -0.483 9.692 -18.833 21.186 Atomic orbital electron populations 1.24897 0.96004 1.00792 1.01376 1.23110 0.94593 1.00423 1.00237 1.18770 0.84882 0.98030 1.03335 1.21293 0.92970 0.95168 1.04411 1.21652 0.97258 0.94219 1.04439 1.20277 0.80444 0.91513 0.76056 1.90726 1.54270 1.46670 1.49713 1.48595 1.04988 1.08604 1.73138 1.22101 0.87095 0.91362 1.01649 1.22499 0.96191 0.94638 1.02393 1.21538 0.94934 0.94636 0.96971 1.22167 0.98676 0.95756 0.98477 1.23018 0.95141 0.99264 0.92165 1.64589 1.42469 1.13836 1.00963 1.22077 0.95961 1.01761 0.89584 1.19733 0.88611 0.85533 0.83418 1.90512 1.24223 1.49648 1.81626 1.41859 1.19632 1.54190 1.04422 1.19641 1.01298 1.36381 0.85438 0.88014 1.25249 0.96873 0.97479 0.98312 1.69604 1.20506 1.45165 1.19150 0.85931 0.79830 0.79383 0.79175 1.19860 1.20983 1.19937 1.23092 1.03250 0.88339 0.92224 1.21991 0.92028 0.85373 1.00012 0.76734 0.89334 0.89591 0.90825 0.90447 0.88538 0.88950 0.91076 0.91449 0.89710 0.90304 0.90951 0.90661 0.93862 0.90344 0.89187 0.93543 0.77528 0.91847 0.87416 0.94166 0.91902 0.88949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.09 19.25 29.55 0.57 -1.52 16 2 C -0.18 -1.95 13.34 -37.12 -0.50 -2.45 16 3 C -0.01 -0.11 5.70 -29.52 -0.17 -0.28 16 4 C -0.10 -1.05 4.46 -26.73 -0.12 -1.17 16 5 C -0.14 -1.29 4.89 -27.88 -0.14 -1.43 16 6 C 0.53 7.41 7.85 -10.98 -0.09 7.32 16 7 O -0.54 -9.90 16.26 5.56 0.09 -9.81 16 8 N -0.62 -7.78 3.34 -171.01 -0.57 -8.35 16 9 C 0.10 0.91 6.46 -2.83 -0.02 0.89 16 10 C -0.12 -1.02 5.86 -25.64 -0.15 -1.17 16 11 C -0.08 -0.92 0.69 -154.07 -0.11 -1.03 16 12 C -0.11 -1.11 6.15 -26.05 -0.16 -1.27 16 13 C 0.03 0.39 6.73 -2.47 -0.02 0.38 16 14 N -0.49 -8.20 5.12 -232.32 -1.19 -9.39 16 15 C 0.04 0.68 5.30 -4.97 -0.03 0.65 16 16 C 0.44 10.46 7.41 -10.98 -0.08 10.38 16 17 O -0.58 -15.61 13.88 5.54 0.08 -15.53 16 18 N -0.56 -14.34 5.29 -10.96 -0.06 -14.40 16 19 C -0.30 -8.34 9.68 -14.93 -0.14 -8.48 16 20 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -24.61 13.05 55.50 0.72 -23.89 16 23 Si 0.93 21.21 29.55 -169.99 -5.02 16.18 16 24 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 27 C 0.06 0.92 4.44 -2.61 -0.01 0.91 16 28 C 0.13 1.70 5.81 -3.25 -0.02 1.68 16 29 H 0.22 1.37 7.80 -54.10 -0.42 0.95 16 30 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 33 H 0.08 0.99 8.10 -51.93 -0.42 0.56 16 34 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.08 0.69 7.81 -51.93 -0.41 0.29 16 39 H 0.08 0.54 8.07 -51.93 -0.42 0.12 16 40 H 0.07 0.59 7.91 -51.93 -0.41 0.18 16 41 H 0.07 0.66 7.63 -51.93 -0.40 0.27 16 42 H 0.04 0.49 7.68 -51.92 -0.40 0.09 16 43 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 45 H 0.05 0.75 7.99 -51.93 -0.41 0.34 16 46 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 47 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 48 H 0.11 2.16 6.37 -51.93 -0.33 1.83 16 49 H 0.04 0.63 7.71 -51.93 -0.40 0.23 16 50 H 0.06 0.75 7.79 -51.93 -0.40 0.34 16 51 H 0.09 1.59 7.95 -51.93 -0.41 1.17 16 LS Contribution 416.76 15.07 6.28 6.28 Total: -1.00 -35.07 416.76 -9.41 -44.48 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: -8.47 Total: 10.50 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: -1.27 Total: 3.92 kcal Atomic # 7 Polarization: -54.93 SS G_CDS: -1.09 Total: -56.03 kcal Atomic # 8 Polarization: -25.50 SS G_CDS: 0.17 Total: -25.34 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -35.07 -9.41 -44.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716730153.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.210 kcal (2) G-P(sol) polarization free energy of solvation -35.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds