Wall clock time and date at job start Wed Apr 1 2020 04:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47542 * 4.92489 * 3 2 1 5 5 C 1.52995 * 109.47418 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.47347 * 179.97438 * 5 4 3 7 7 O 1.21277 * 119.99815 * 0.02562 * 6 5 4 8 8 N 1.34778 * 120.00026 * 180.02562 * 6 5 4 9 9 C 1.47153 * 125.59886 * 359.97438 * 8 6 5 10 10 C 1.54630 * 107.34079 * 179.08575 * 9 8 6 11 11 C 1.53458 * 102.74303 * 339.33976 * 10 9 8 12 12 C 1.52920 * 112.19679 * 154.98835 * 11 10 9 13 13 C 1.54375 * 104.67011 * 142.09911 * 12 11 10 14 14 N 1.48042 * 107.02442 * 2.24408 * 13 12 11 15 15 C 1.46905 * 111.00046 * 214.47809 * 14 13 12 16 16 C 1.50700 * 109.46959 * 176.62533 * 15 14 13 17 17 O 1.21297 * 120.00048 * 6.13557 * 16 15 14 18 18 N 1.34778 * 119.99889 * 186.14372 * 16 15 14 19 19 C 1.37101 * 119.99885 * 179.97438 * 18 16 15 20 20 H 1.07998 * 119.99906 * 359.97438 * 19 18 16 21 21 C 1.38946 * 119.99723 * 179.97438 * 19 18 16 22 22 N 1.31416 * 120.00363 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99862 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.46997 * 60.00369 * 23 21 19 25 25 H 1.48498 * 109.46952 * 179.97438 * 23 21 19 26 26 H 1.48492 * 109.46920 * 299.99653 * 23 21 19 27 27 C 1.48852 * 106.07056 * 335.14512 * 14 13 12 28 28 C 1.47753 * 125.59798 * 179.97438 * 8 6 5 29 29 H 4.44652 * 5.63365 * 179.97438 * 4 1 2 30 30 H 1.09004 * 109.47047 * 244.92666 * 3 2 1 31 31 H 1.08997 * 109.46760 * 124.92722 * 3 2 1 32 32 H 1.09004 * 109.46805 * 60.00029 * 4 3 2 33 33 H 1.09004 * 109.47337 * 300.00281 * 4 3 2 34 34 H 1.09004 * 109.46982 * 60.00292 * 5 4 3 35 35 H 1.09004 * 109.47222 * 300.00506 * 5 4 3 36 36 H 1.09005 * 109.86814 * 59.64928 * 9 8 6 37 37 H 1.08994 * 109.87360 * 298.52798 * 9 8 6 38 38 H 1.08999 * 110.75947 * 221.02451 * 10 9 8 39 39 H 1.09004 * 110.75439 * 97.65258 * 10 9 8 40 40 H 1.08999 * 110.39413 * 23.30483 * 12 11 10 41 41 H 1.08996 * 110.49405 * 260.94960 * 12 11 10 42 42 H 1.09011 * 109.92423 * 242.90105 * 13 12 11 43 43 H 1.08998 * 110.09524 * 121.68301 * 13 12 11 44 44 H 1.08998 * 109.47198 * 296.61859 * 15 14 13 45 45 H 1.08997 * 109.47110 * 56.62298 * 15 14 13 46 46 H 0.97002 * 119.99866 * 359.97438 * 18 16 15 47 47 H 0.96996 * 120.00096 * 180.02562 * 22 21 19 48 48 H 1.08999 * 110.69105 * 155.74323 * 27 14 13 49 49 H 1.09004 * 110.69413 * 278.93903 * 27 14 13 50 50 H 1.08994 * 110.40197 * 83.54426 * 28 8 6 51 51 H 1.09004 * 110.39393 * 321.13600 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1567 -1.4363 -0.1238 5 6 4.6867 -1.4355 -0.1245 6 6 5.1897 -2.8509 -0.2458 7 8 4.4021 -3.7697 -0.3245 8 7 6.5149 -3.0956 -0.2668 9 6 7.5752 -2.0789 -0.1803 10 6 8.9307 -2.8220 -0.2202 11 6 8.5478 -4.2473 0.2001 12 6 9.5337 -5.2900 -0.3283 13 6 9.6613 -6.3214 0.8132 14 7 8.7429 -5.8903 1.8914 15 6 9.2987 -6.2065 3.2140 16 6 8.3778 -5.6803 4.2846 17 8 7.3068 -5.1988 3.9805 18 7 8.7443 -5.7447 5.5800 19 6 7.9067 -5.2655 6.5540 20 1 6.9535 -4.8362 6.2832 21 6 8.2844 -5.3323 7.8895 22 7 9.4445 -5.8543 8.2190 23 14 7.1435 -4.6789 9.2165 24 1 5.8562 -5.4176 9.1704 25 1 7.7740 -4.8668 10.5478 26 1 6.8934 -3.2334 8.9864 27 6 8.5699 -4.4216 1.7227 28 6 7.1417 -4.4288 -0.3806 29 1 -1.0498 -0.0005 0.0002 30 1 3.0091 0.4363 0.9309 31 1 3.0090 0.5892 -0.8426 32 1 2.7936 -1.8719 -1.0547 33 1 2.7936 -2.0248 0.7187 34 1 5.0502 -0.9997 0.8062 35 1 5.0494 -0.8470 -0.9673 36 1 7.4831 -1.5262 0.7547 37 1 7.5026 -1.3949 -1.0258 38 1 9.6320 -2.3849 0.4906 39 1 9.3456 -2.8147 -1.2281 40 1 10.4999 -4.8293 -0.5338 41 1 9.1412 -5.7650 -1.2274 42 1 10.6863 -6.3404 1.1838 43 1 9.3770 -7.3115 0.4569 44 1 9.3968 -7.2870 3.3181 45 1 10.2789 -5.7410 3.3169 46 1 9.6007 -6.1300 5.8232 47 1 9.7079 -5.9013 9.1513 48 1 7.6285 -4.0917 2.1619 49 1 9.4101 -3.8820 2.1599 50 1 7.1987 -4.7339 -1.4254 51 1 6.5824 -5.1622 0.2003 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716730153.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:10 Heat of formation + Delta-G solvation = -41.389853 kcal Electronic energy + Delta-G solvation = -30682.675672 eV Core-core repulsion = 26582.034093 eV Total energy + Delta-G solvation = -4100.641579 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.71075 -40.47609 -39.60822 -37.44238 -36.49830 -35.94936 -33.84741 -33.29521 -33.05508 -31.19013 -29.97237 -29.06172 -28.47266 -26.75170 -25.69881 -23.88680 -23.02895 -22.20207 -21.04070 -20.40423 -20.14312 -19.87136 -19.02663 -17.95791 -17.72808 -17.30224 -16.74307 -16.64638 -16.50482 -16.17401 -15.98772 -15.84624 -15.48801 -15.03790 -14.95952 -14.78774 -14.42035 -14.21482 -13.94373 -13.66056 -13.61216 -13.46658 -13.39393 -13.19608 -13.10540 -12.95517 -12.80504 -12.60115 -12.52823 -12.46194 -12.21714 -12.11834 -11.98663 -11.79246 -11.53881 -11.43027 -11.39008 -11.19849 -10.99177 -10.86230 -10.27917 -10.03106 -9.62112 -9.26058 -8.48980 -5.97644 1.36587 1.38701 1.49504 1.63510 1.81044 1.90908 2.02678 2.09192 2.26474 2.85431 3.17595 3.26319 3.42818 3.51467 3.55527 3.60754 3.77333 4.00830 4.03211 4.12146 4.20645 4.27631 4.33911 4.37975 4.40427 4.46407 4.52867 4.60182 4.62573 4.67070 4.70117 4.75403 4.78375 4.80705 4.88704 4.94406 5.02007 5.13246 5.15810 5.18285 5.19282 5.21871 5.28729 5.33402 5.37694 5.42040 5.86754 5.99421 6.14273 6.55835 6.58720 6.70433 7.10783 7.17229 7.53614 8.10497 8.68296 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007245 B = 0.002972 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3863.669724 B = 9420.474733 C =12602.478889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.218 4.218 3 C -0.008 4.008 4 C -0.095 4.095 5 C -0.124 4.124 6 C 0.512 3.488 7 O -0.598 6.598 8 N -0.621 5.621 9 C 0.093 3.907 10 C -0.109 4.109 11 C -0.071 4.071 12 C -0.102 4.102 13 C 0.029 3.971 14 N -0.524 5.524 15 C 0.051 3.949 16 C 0.438 3.562 17 O -0.617 6.617 18 N -0.573 5.573 19 C -0.333 4.333 20 H 0.075 0.925 21 C -0.011 4.011 22 N -0.919 5.919 23 Si 0.990 3.010 24 H -0.275 1.275 25 H -0.267 1.267 26 H -0.270 1.270 27 C 0.062 3.938 28 C 0.126 3.874 29 H 0.240 0.760 30 H 0.100 0.900 31 H 0.114 0.886 32 H 0.059 0.941 33 H 0.040 0.960 34 H 0.110 0.890 35 H 0.134 0.866 36 H 0.069 0.931 37 H 0.106 0.894 38 H 0.094 0.906 39 H 0.112 0.888 40 H 0.104 0.896 41 H 0.090 0.910 42 H 0.060 0.940 43 H 0.082 0.918 44 H 0.106 0.894 45 H 0.071 0.929 46 H 0.396 0.604 47 H 0.278 0.722 48 H 0.053 0.947 49 H 0.041 0.959 50 H 0.081 0.919 51 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.666 11.564 -21.541 24.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.218 4.218 3 C -0.045 4.045 4 C -0.133 4.133 5 C -0.163 4.163 6 C 0.303 3.697 7 O -0.480 6.480 8 N -0.354 5.354 9 C -0.028 4.028 10 C -0.147 4.147 11 C -0.073 4.073 12 C -0.140 4.140 13 C -0.098 4.098 14 N -0.249 5.249 15 C -0.080 4.080 16 C 0.225 3.775 17 O -0.503 6.503 18 N -0.211 5.211 19 C -0.462 4.462 20 H 0.093 0.907 21 C -0.211 4.211 22 N -0.560 5.560 23 Si 0.814 3.186 24 H -0.201 1.201 25 H -0.192 1.192 26 H -0.196 1.196 27 C -0.065 4.065 28 C 0.004 3.996 29 H 0.257 0.743 30 H 0.119 0.881 31 H 0.132 0.868 32 H 0.077 0.923 33 H 0.059 0.941 34 H 0.129 0.871 35 H 0.152 0.848 36 H 0.087 0.913 37 H 0.124 0.876 38 H 0.112 0.888 39 H 0.131 0.869 40 H 0.122 0.878 41 H 0.109 0.891 42 H 0.079 0.921 43 H 0.101 0.899 44 H 0.124 0.876 45 H 0.089 0.911 46 H 0.230 0.770 47 H 0.088 0.912 48 H 0.072 0.928 49 H 0.059 0.941 50 H 0.099 0.901 51 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 1.094 11.114 -21.613 24.328 hybrid contribution 0.082 -0.217 1.627 1.643 sum 1.176 10.897 -19.986 22.794 Atomic orbital electron populations 1.25714 0.97099 0.99971 1.00843 1.23836 0.95873 1.01213 1.00909 1.18826 0.83861 0.96617 1.05148 1.21180 0.93891 0.96165 1.02087 1.21676 0.96212 0.91641 1.06787 1.21192 0.80596 0.92820 0.75061 1.90688 1.55900 1.48752 1.52640 1.48783 1.05437 1.09323 1.71861 1.22425 0.86151 0.91002 1.03262 1.22562 0.96035 0.91705 1.04413 1.21449 0.94409 0.97736 0.93669 1.22203 0.99574 0.94447 0.97801 1.23140 0.94974 1.00194 0.91469 1.64507 1.44655 1.14517 1.01229 1.21935 0.95143 1.02398 0.88537 1.20813 0.88785 0.83953 0.83931 1.90503 1.26394 1.51017 1.82338 1.41919 1.19591 1.54695 1.04859 1.19566 1.01304 1.38386 0.86971 0.90730 1.26002 0.98309 0.97153 0.99624 1.69659 1.21314 1.45070 1.19975 0.85031 0.77841 0.78731 0.77000 1.20089 1.19179 1.19557 1.22874 1.00363 0.88023 0.95284 1.21932 0.92558 0.85003 1.00120 0.74304 0.88135 0.86752 0.92261 0.94069 0.87149 0.84792 0.91290 0.87600 0.88786 0.86945 0.87785 0.89133 0.92120 0.89949 0.87648 0.91140 0.77015 0.91233 0.92827 0.94056 0.90082 0.94336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -4.26 19.25 74.32 1.43 -2.82 16 2 C -0.22 -4.63 13.34 31.13 0.42 -4.21 16 3 C -0.01 -0.13 5.70 28.79 0.16 0.03 16 4 C -0.10 -2.06 4.46 30.59 0.14 -1.93 16 5 C -0.12 -2.27 4.89 29.85 0.15 -2.12 16 6 C 0.51 14.96 7.85 87.66 0.69 15.64 16 7 O -0.60 -24.03 16.26 -3.02 -0.05 -24.08 16 8 N -0.62 -15.57 3.34 -813.34 -2.72 -18.29 16 9 C 0.09 1.43 6.46 86.81 0.56 1.99 16 10 C -0.11 -1.47 5.86 31.30 0.18 -1.29 16 11 C -0.07 -1.54 0.69 -51.90 -0.04 -1.58 16 12 C -0.10 -1.66 6.15 31.03 0.19 -1.47 16 13 C 0.03 0.65 6.73 86.55 0.58 1.23 16 14 N -0.52 -17.46 5.12 -888.93 -4.55 -22.01 16 15 C 0.05 1.84 5.30 85.56 0.45 2.30 16 16 C 0.44 21.59 7.41 87.66 0.65 22.24 16 17 O -0.62 -35.61 13.88 -3.08 -0.04 -35.65 16 18 N -0.57 -30.15 5.29 -306.98 -1.62 -31.77 16 19 C -0.33 -19.34 9.68 84.04 0.81 -18.53 16 20 H 0.07 4.66 7.16 -2.91 -0.02 4.64 16 21 C -0.01 -0.60 5.50 84.92 0.47 -0.13 16 22 N -0.92 -50.10 13.05 21.66 0.28 -49.82 16 23 Si 0.99 43.77 29.55 68.60 2.03 45.80 16 24 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 25 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 26 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 27 C 0.06 2.00 4.44 86.01 0.38 2.39 16 28 C 0.13 3.42 5.81 86.21 0.50 3.92 16 29 H 0.24 2.87 7.80 -4.43 -0.03 2.84 16 30 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.06 1.43 8.10 -2.39 -0.02 1.41 16 33 H 0.04 1.16 8.10 -2.38 -0.02 1.14 16 34 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.13 1.34 8.14 -2.38 -0.02 1.32 16 36 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 37 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.09 1.17 7.81 -2.39 -0.02 1.15 16 39 H 0.11 0.86 8.07 -2.38 -0.02 0.84 16 40 H 0.10 1.12 7.91 -2.39 -0.02 1.10 16 41 H 0.09 1.25 7.63 -2.39 -0.02 1.23 16 42 H 0.06 1.15 7.68 -2.38 -0.02 1.13 16 43 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.11 3.44 8.14 -2.39 -0.02 3.42 16 45 H 0.07 2.19 7.99 -2.39 -0.02 2.17 16 46 H 0.40 19.69 7.90 -92.71 -0.73 18.96 16 47 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16 48 H 0.05 2.31 6.37 -2.39 -0.02 2.30 16 49 H 0.04 1.28 7.71 -2.38 -0.02 1.27 16 50 H 0.08 1.86 7.79 -2.39 -0.02 1.84 16 51 H 0.04 1.45 7.95 -2.39 -0.02 1.43 16 Total: -1.00 -84.77 416.76 1.25 -83.52 By element: Atomic # 1 Polarization: 36.45 SS G_CDS: 0.19 Total: 36.64 kcal Atomic # 6 Polarization: 7.92 SS G_CDS: 7.73 Total: 15.65 kcal Atomic # 7 Polarization: -113.28 SS G_CDS: -8.61 Total: -121.88 kcal Atomic # 8 Polarization: -59.64 SS G_CDS: -0.09 Total: -59.73 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -84.77 1.25 -83.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716730153.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.133 kcal (2) G-P(sol) polarization free energy of solvation -84.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds