Wall clock time and date at job start Wed Apr 1 2020 04:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47117 * 2 1 4 4 C 1.53003 * 109.46897 * 240.00350 * 2 1 3 5 5 C 1.47192 * 109.47469 * 120.00245 * 2 1 3 6 6 C 2.64599 * 109.47302 * 120.00293 * 2 1 3 7 7 C 4.07794 * 109.47250 * 120.00311 * 2 1 3 8 8 O 1.21608 * 120.00322 * 169.44852 * 7 6 5 9 9 N 1.34782 * 119.99720 * 349.44823 * 7 6 5 10 10 C 1.47210 * 126.70242 * 179.97438 * 9 7 6 11 11 C 1.53757 * 106.40325 * 211.34608 * 10 9 7 12 12 H 1.09000 * 112.86502 * 103.85914 * 11 10 9 13 13 C 1.54310 * 109.07908 * 229.09558 * 11 10 9 14 14 N 1.48522 * 104.79077 * 136.36365 * 13 11 10 15 15 C 1.46899 * 111.00058 * 200.71508 * 14 13 11 16 16 C 1.50705 * 109.47142 * 170.00027 * 15 14 13 17 17 O 1.21292 * 119.99794 * 359.97438 * 16 15 14 18 18 N 1.34771 * 120.00085 * 180.02562 * 16 15 14 19 19 C 1.37095 * 120.00544 * 179.97438 * 18 16 15 20 20 H 1.08004 * 119.99461 * 359.97438 * 19 18 16 21 21 C 1.38946 * 120.00540 * 179.97438 * 19 18 16 22 22 N 1.31415 * 120.00082 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00193 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47110 * 89.99810 * 23 21 19 25 25 H 1.48498 * 109.46949 * 210.00136 * 23 21 19 26 26 H 1.48508 * 109.46827 * 329.99761 * 23 21 19 27 27 C 1.48526 * 104.20811 * 320.26308 * 14 13 11 28 28 C 1.54301 * 104.69326 * 39.68015 * 27 14 13 29 29 H 1.08995 * 112.04914 * 97.98561 * 28 27 14 30 30 C 1.49877 * 126.19712 * 0.50523 * 9 7 6 31 31 H 1.09005 * 109.46770 * 299.99783 * 1 2 3 32 32 H 1.09002 * 109.47328 * 59.99563 * 1 2 3 33 33 H 1.08997 * 109.46929 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.47141 * 180.02562 * 3 2 1 35 35 H 1.09002 * 109.47379 * 300.00406 * 3 2 1 36 36 H 1.08994 * 109.47603 * 60.00413 * 3 2 1 37 37 H 1.09008 * 109.46816 * 300.00037 * 4 2 1 38 38 H 1.09002 * 109.47412 * 59.99509 * 4 2 1 39 39 H 1.08998 * 109.47276 * 179.97438 * 4 2 1 40 40 H 1.08999 * 110.06524 * 92.11043 * 10 9 7 41 41 H 1.08998 * 110.07051 * 330.58786 * 10 9 7 42 42 H 1.09002 * 110.39531 * 17.50172 * 13 11 10 43 43 H 1.09004 * 110.39250 * 255.21987 * 13 11 10 44 44 H 1.08999 * 109.46813 * 289.99461 * 15 14 13 45 45 H 1.08994 * 109.47422 * 49.99628 * 15 14 13 46 46 H 0.97013 * 119.99977 * 359.97438 * 18 16 15 47 47 H 0.96990 * 120.00143 * 180.02562 * 22 21 19 48 48 H 1.09001 * 110.39728 * 158.48756 * 27 14 13 49 49 H 1.09003 * 110.39192 * 280.76185 * 27 14 13 50 50 H 1.08999 * 111.05014 * 30.09289 * 30 9 7 51 51 H 1.09003 * 110.15597 * 267.85102 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0208 -0.6939 1.2018 6 6 2.4121 -1.2474 2.1604 7 6 2.8894 -1.9225 3.3295 8 8 4.0284 -1.7401 3.7146 9 7 2.0763 -2.7602 4.0031 10 6 2.4110 -3.5265 5.2147 11 6 1.5889 -4.8241 5.1486 12 1 2.1861 -5.6897 4.8620 13 6 0.8721 -5.0363 6.4986 14 7 -0.5054 -5.4558 6.1346 15 6 -1.4367 -5.2271 7.2474 16 6 -2.8512 -5.4291 6.7682 17 8 -3.0626 -5.7331 5.6132 18 7 -3.8812 -5.2708 7.6228 19 6 -5.1681 -5.4541 7.1869 20 1 -5.3563 -5.7248 6.1584 21 6 -6.2300 -5.2914 8.0681 22 7 -6.0009 -4.9615 9.3193 23 14 -7.9833 -5.5418 7.4742 24 1 -8.3706 -6.9633 7.6599 25 1 -8.8994 -4.6729 8.2557 26 1 -8.0735 -5.1882 6.0346 27 6 -0.8499 -4.6031 4.9683 28 6 0.4471 -4.5368 4.1352 29 1 0.4407 -5.2497 3.3107 30 6 0.6589 -3.0940 3.6481 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6768 1.9563 0.8899 37 1 1.6766 -1.7489 -1.2493 38 1 1.6766 -0.2074 -2.1393 39 1 3.1300 -0.7208 -1.2496 40 1 2.1405 -2.9571 6.1039 41 1 3.4759 -3.7585 5.2282 42 1 0.8484 -4.1062 7.0664 43 1 1.3680 -5.8187 7.0731 44 1 -1.2216 -5.9307 8.0516 45 1 -1.3198 -4.2078 7.6154 46 1 -3.7121 -5.0273 8.5465 47 1 -6.7422 -4.8483 9.9345 48 1 -1.6515 -5.0595 4.3876 49 1 -1.1420 -3.6065 5.2996 50 1 0.5010 -3.0358 2.5712 51 1 -0.0259 -2.4210 4.1641 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717009894.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:15 Heat of formation + Delta-G solvation = -10.155624 kcal Electronic energy + Delta-G solvation = -30030.814347 eV Core-core repulsion = 25931.527186 eV Total energy + Delta-G solvation = -4099.287161 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.64381 -39.12706 -38.01882 -37.85432 -35.62027 -33.94705 -32.74317 -31.62615 -31.16919 -30.80752 -27.77219 -27.74675 -27.54904 -26.12542 -25.27572 -24.09306 -22.59720 -21.39201 -20.52586 -19.89514 -19.12494 -18.09520 -17.85935 -16.69951 -16.17089 -15.96126 -15.91935 -15.57168 -14.96175 -14.77582 -14.72872 -14.66711 -14.47230 -14.20355 -13.74977 -13.36711 -13.04249 -12.93515 -12.90509 -12.83737 -12.48702 -12.24880 -12.19968 -12.15856 -11.97829 -11.77218 -11.71032 -11.60939 -11.52474 -11.40558 -11.14982 -11.02708 -10.78927 -10.69765 -10.63268 -10.57779 -10.42505 -10.31321 -10.26354 -9.53383 -9.01659 -8.48145 -8.08384 -7.97052 -6.46431 -3.87498 1.33210 1.99122 2.68958 3.14321 3.23512 3.28549 3.29355 3.61610 3.83735 3.98033 4.17237 4.21352 4.41282 4.44466 4.46319 4.55530 4.69324 4.89277 4.94852 5.00862 5.08343 5.14502 5.16235 5.17835 5.20758 5.29071 5.31045 5.39033 5.39175 5.44532 5.53985 5.57793 5.61023 5.64035 5.71527 5.73334 5.76884 5.79402 5.81783 5.90283 5.96711 6.06534 6.19119 6.21526 6.54690 6.96677 7.08633 7.13743 7.19007 7.50705 7.81700 8.00757 8.55966 9.12835 9.48468 9.99615 10.71137 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011337 B = 0.002174 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2469.247907 B =12874.059408 C =14685.501922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.036 3.964 3 C -0.142 4.142 4 C -0.142 4.142 5 C -0.066 4.066 6 C -0.218 4.218 7 C 0.651 3.349 8 O -0.530 6.530 9 N -0.611 5.611 10 C 0.115 3.885 11 C -0.098 4.098 12 H 0.100 0.900 13 C 0.035 3.965 14 N -0.487 5.487 15 C 0.034 3.966 16 C 0.441 3.559 17 O -0.582 6.582 18 N -0.561 5.561 19 C -0.300 4.300 20 H 0.104 0.896 21 C 0.023 3.977 22 N -0.900 5.900 23 Si 0.930 3.070 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.270 1.270 27 C 0.042 3.958 28 C -0.104 4.104 29 H 0.098 0.902 30 C 0.106 3.894 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.074 0.926 41 H 0.084 0.916 42 H 0.046 0.954 43 H 0.084 0.916 44 H 0.092 0.908 45 H 0.049 0.951 46 H 0.392 0.608 47 H 0.272 0.728 48 H 0.119 0.881 49 H 0.040 0.960 50 H 0.082 0.918 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.466 8.788 -13.885 22.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.036 3.964 3 C -0.199 4.199 4 C -0.199 4.199 5 C -0.069 4.069 6 C -0.221 4.221 7 C 0.440 3.560 8 O -0.408 6.408 9 N -0.344 5.344 10 C -0.007 4.007 11 C -0.118 4.118 12 H 0.118 0.882 13 C -0.094 4.094 14 N -0.210 5.210 15 C -0.098 4.098 16 C 0.227 3.773 17 O -0.467 6.467 18 N -0.197 5.197 19 C -0.429 4.429 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.542 5.542 23 Si 0.757 3.243 24 H -0.203 1.203 25 H -0.209 1.209 26 H -0.194 1.194 27 C -0.085 4.085 28 C -0.124 4.124 29 H 0.116 0.884 30 C -0.016 4.016 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.103 0.897 42 H 0.065 0.935 43 H 0.102 0.898 44 H 0.110 0.890 45 H 0.067 0.933 46 H 0.226 0.774 47 H 0.082 0.918 48 H 0.137 0.863 49 H 0.058 0.942 50 H 0.100 0.900 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 15.793 8.202 -14.415 22.902 hybrid contribution -0.837 0.882 0.833 1.473 sum 14.956 9.084 -13.583 22.152 Atomic orbital electron populations 1.21924 0.91970 1.03129 1.02988 1.17968 0.96160 0.94412 0.87864 1.21911 1.01788 0.93353 1.02883 1.21906 1.01745 1.00731 0.95492 1.22517 0.96617 0.94412 0.93348 1.20510 1.02219 1.02605 0.96773 1.14230 0.83661 0.78073 0.80030 1.90851 1.17858 1.63981 1.68102 1.49038 1.13838 1.43596 1.27917 1.22185 1.00849 0.91058 0.86593 1.22740 0.96142 0.97189 0.95732 0.88176 1.23323 0.90808 0.99754 0.95486 1.65240 1.00166 1.50671 1.04963 1.22094 0.92871 1.00412 0.94392 1.19687 0.85714 0.84894 0.87018 1.90442 1.84881 1.53100 1.18227 1.41858 1.05494 1.60539 1.11804 1.19692 0.81158 1.44260 0.97801 0.87864 1.25277 1.00438 0.97136 0.95080 1.69608 1.33162 1.47615 1.03769 0.85854 0.81380 0.78242 0.78794 1.20349 1.20928 1.19411 1.23460 0.96613 0.95787 0.92687 1.22830 0.95617 0.95237 0.98667 0.88377 1.22861 0.81200 0.96095 1.01424 0.91818 0.91031 0.91692 0.91904 0.91065 0.91903 0.91821 0.91017 0.91938 0.90787 0.89719 0.93542 0.89780 0.89022 0.93283 0.77432 0.91812 0.86297 0.94213 0.89998 0.90347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 8.43 37.16 0.31 -0.58 16 2 C 0.04 0.26 0.95 -157.30 -0.15 0.11 16 3 C -0.14 -0.86 8.43 37.16 0.31 -0.55 16 4 C -0.14 -0.84 8.43 37.16 0.31 -0.52 16 5 C -0.07 -0.69 11.77 -37.13 -0.44 -1.13 16 6 C -0.22 -2.74 12.50 -38.84 -0.49 -3.23 16 7 C 0.65 9.18 7.72 -14.33 -0.11 9.07 16 8 O -0.53 -9.04 17.32 5.27 0.09 -8.95 16 9 N -0.61 -7.44 3.38 -172.27 -0.58 -8.02 16 10 C 0.12 1.25 6.57 -3.26 -0.02 1.23 16 11 C -0.10 -1.05 4.10 -88.29 -0.36 -1.42 16 12 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 13 C 0.03 0.41 6.02 -2.24 -0.01 0.40 16 14 N -0.49 -7.63 5.33 -231.57 -1.24 -8.86 16 15 C 0.03 0.58 5.55 -4.97 -0.03 0.55 16 16 C 0.44 9.97 7.50 -10.99 -0.08 9.89 16 17 O -0.58 -14.76 13.24 5.55 0.07 -14.68 16 18 N -0.56 -13.79 5.29 -10.96 -0.06 -13.85 16 19 C -0.30 -8.12 9.68 -14.94 -0.14 -8.27 16 20 H 0.10 2.93 7.16 -52.48 -0.38 2.55 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.06 13.05 55.50 0.72 -23.34 16 23 Si 0.93 20.61 29.55 -169.99 -5.02 15.59 16 24 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 25 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 27 C 0.04 0.64 4.85 -2.24 -0.01 0.63 16 28 C -0.10 -1.22 4.03 -88.30 -0.36 -1.57 16 29 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 30 C 0.11 1.16 6.49 -1.77 -0.01 1.15 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 38 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.78 7.10 -51.93 -0.37 0.41 16 41 H 0.08 0.91 7.92 -51.93 -0.41 0.50 16 42 H 0.05 0.52 6.83 -51.93 -0.35 0.17 16 43 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 45 H 0.05 0.77 7.88 -51.93 -0.41 0.36 16 46 H 0.39 9.28 7.90 -40.81 -0.32 8.95 16 47 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 48 H 0.12 2.20 6.04 -51.93 -0.31 1.88 16 49 H 0.04 0.61 7.02 -51.93 -0.36 0.25 16 50 H 0.08 0.81 7.61 -51.93 -0.40 0.42 16 51 H 0.08 0.87 7.11 -51.93 -0.37 0.50 16 LS Contribution 413.70 15.07 6.23 6.23 Total: -1.00 -32.32 413.70 -9.46 -41.78 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -8.31 Total: 7.84 kcal Atomic # 6 Polarization: 7.64 SS G_CDS: -1.37 Total: 6.27 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: -1.15 Total: -54.07 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: 0.16 Total: -23.64 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -32.32 -9.46 -41.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717009894.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.623 kcal (2) G-P(sol) polarization free energy of solvation -32.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds