Wall clock time and date at job start Wed Apr 1 2020 04:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47320 * 2 1 4 4 C 1.53009 * 109.47041 * 240.00079 * 2 1 3 5 5 C 1.52998 * 109.47074 * 120.00828 * 2 1 3 6 6 H 1.08995 * 109.47123 * 180.02562 * 5 2 1 7 7 C 1.53009 * 109.46575 * 299.99536 * 5 2 1 8 8 N 1.46507 * 109.46806 * 174.99989 * 7 5 2 9 9 C 1.36926 * 119.99558 * 179.97438 * 8 7 5 10 10 H 1.08000 * 120.00628 * 0.02562 * 9 8 7 11 11 C 1.38817 * 119.99858 * 179.97438 * 9 8 7 12 12 N 1.31623 * 119.99737 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00308 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47012 * 90.00083 * 13 11 9 15 15 H 1.48493 * 109.47388 * 210.00351 * 13 11 9 16 16 H 1.48508 * 109.46947 * 330.00512 * 13 11 9 17 17 N 1.46496 * 109.47395 * 59.99521 * 5 2 1 18 18 C 1.34779 * 119.99953 * 85.00437 * 17 5 2 19 19 O 1.21549 * 119.99783 * 359.97438 * 18 17 5 20 20 C 1.47927 * 120.00059 * 179.97438 * 18 17 5 21 21 C 1.39466 * 119.71567 * 180.02562 * 20 18 17 22 22 C 1.38414 * 119.06675 * 180.02562 * 21 20 18 23 23 C 1.38692 * 118.72248 * 359.82978 * 22 21 20 24 24 C 1.39546 * 119.04358 * 0.20059 * 23 22 21 25 25 N 1.31301 * 120.84587 * 359.88945 * 24 23 22 26 26 O 1.35531 * 121.72317 * 180.24512 * 23 22 21 27 27 C 1.42888 * 117.74798 * 342.71821 * 26 23 22 28 28 C 1.53392 * 108.68163 * 49.17677 * 27 26 23 29 29 C 1.50498 * 119.62315 * 179.63967 * 22 21 20 30 30 H 1.08993 * 109.47143 * 300.00021 * 1 2 3 31 31 H 1.09005 * 109.46841 * 60.00183 * 1 2 3 32 32 H 1.08998 * 109.47111 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46879 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.47340 * 300.00293 * 3 2 1 35 35 H 1.09007 * 109.46962 * 60.00049 * 3 2 1 36 36 H 1.08995 * 109.47073 * 300.00202 * 4 2 1 37 37 H 1.09003 * 109.46712 * 60.00592 * 4 2 1 38 38 H 1.08995 * 109.46746 * 179.97438 * 4 2 1 39 39 H 1.08996 * 109.47026 * 295.00031 * 7 5 2 40 40 H 1.08995 * 109.46753 * 55.00636 * 7 5 2 41 41 H 0.96994 * 119.99895 * 0.02562 * 8 7 5 42 42 H 0.97003 * 119.99690 * 179.97438 * 12 11 9 43 43 H 0.96999 * 119.99880 * 265.00214 * 17 5 2 44 44 H 1.08004 * 120.46729 * 359.97438 * 21 20 18 45 45 H 1.08002 * 119.57725 * 179.87507 * 24 23 22 46 46 H 1.09002 * 109.62851 * 168.98501 * 27 26 23 47 47 H 1.09005 * 109.62981 * 289.37159 * 27 26 23 48 48 H 1.09007 * 109.68973 * 55.12822 * 28 27 26 49 49 H 1.09000 * 109.69281 * 175.70127 * 28 27 26 50 50 H 1.08989 * 109.45891 * 282.62519 * 29 22 21 51 51 H 1.09000 * 109.45668 * 42.59701 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0400 -0.7214 1.2491 6 1 3.1300 -0.7210 1.2494 7 6 1.5300 -0.0001 2.4985 8 7 1.9175 -0.7569 3.6916 9 6 1.5689 -0.3008 4.9347 10 1 1.0080 0.6166 5.0357 11 6 1.9356 -1.0181 6.0652 12 7 2.6188 -2.1363 5.9421 13 14 1.4595 -0.3963 7.7611 14 1 0.1367 -0.9549 8.1397 15 1 2.4799 -0.8262 8.7505 16 1 1.3832 1.0867 7.7412 17 7 1.5516 -2.1026 1.2490 18 6 2.2284 -3.0566 0.5795 19 8 3.2437 -2.7709 -0.0246 20 6 1.7356 -4.4514 0.5799 21 6 2.4409 -5.4340 -0.1145 22 6 1.9674 -6.7346 -0.1056 23 6 0.8063 -7.0164 0.5988 24 6 0.1531 -5.9819 1.2700 25 7 0.6256 -4.7572 1.2417 26 8 0.2916 -8.2690 0.6524 27 6 0.7400 -9.2147 -0.3204 28 6 2.2730 -9.1845 -0.3648 29 6 2.7141 -7.8033 -0.8574 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 3.1301 1.4423 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9563 0.8901 36 1 1.6767 -1.7489 -1.2494 37 1 1.6767 -0.2073 -2.1393 38 1 3.1300 -0.7209 -1.2495 39 1 1.9647 0.9983 2.5444 40 1 0.4437 0.0780 2.4548 41 1 2.4216 -1.5806 3.6009 42 1 2.8754 -2.6374 6.7321 43 1 0.7412 -2.3304 1.7309 44 1 3.3434 -5.1835 -0.6522 45 1 -0.7527 -6.1913 1.8195 46 1 0.4013 -10.2131 -0.0437 47 1 0.3401 -8.9506 -1.2994 48 1 2.6729 -9.3600 0.6339 49 1 2.6359 -9.9535 -1.0467 50 1 2.4993 -7.7156 -1.9223 51 1 3.7847 -7.6830 -0.6918 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717970649.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:51 Heat of formation + Delta-G solvation = -59.939604 kcal Electronic energy + Delta-G solvation = -31577.979633 eV Core-core repulsion = 27476.533677 eV Total energy + Delta-G solvation = -4101.445956 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.28286 -41.23729 -39.54045 -38.41367 -36.18795 -35.71154 -34.60105 -33.07613 -32.60207 -31.85936 -29.36522 -28.15642 -27.93004 -27.09881 -26.18700 -25.37988 -24.37101 -23.28693 -22.53169 -20.88229 -19.85829 -19.31458 -18.87051 -18.82721 -17.93667 -17.08914 -17.03314 -16.58491 -16.55894 -16.08453 -15.64951 -15.53568 -15.41705 -15.06879 -15.02268 -14.90280 -14.81108 -14.43911 -14.35376 -14.17030 -13.92613 -13.62066 -13.33366 -13.05268 -13.01368 -12.93136 -12.74128 -12.52705 -12.48567 -12.35436 -12.18516 -12.02435 -11.89045 -11.75570 -11.72633 -11.63977 -11.29873 -11.24070 -10.91564 -10.64528 -10.56617 -9.93151 -9.48383 -8.98295 -7.92359 -5.22070 -0.38547 0.06468 1.47470 1.49644 1.57863 1.67952 2.08099 2.20277 2.56943 2.76486 3.17686 3.41248 3.41419 3.48399 3.64889 3.66011 3.82513 3.87923 3.96674 4.03450 4.08209 4.25354 4.26101 4.34332 4.44116 4.49781 4.53263 4.63320 4.64495 4.70299 4.82750 4.85263 4.87741 4.89769 4.94654 4.96788 5.02351 5.06934 5.08990 5.14455 5.16157 5.24611 5.25796 5.31396 5.44725 5.50799 5.55849 5.64397 6.14750 6.27451 6.46826 6.77539 7.20778 7.34329 8.08484 8.32342 9.30898 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008738 B = 0.003441 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3203.687561 B = 8136.008851 C =10489.288971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.070 4.070 3 C -0.138 4.138 4 C -0.120 4.120 5 C 0.155 3.845 6 H 0.060 0.940 7 C 0.145 3.855 8 N -0.743 5.743 9 C -0.242 4.242 10 H 0.080 0.920 11 C -0.075 4.075 12 N -0.970 5.970 13 Si 0.974 3.026 14 H -0.287 1.287 15 H -0.299 1.299 16 H -0.268 1.268 17 N -0.686 5.686 18 C 0.571 3.429 19 O -0.563 6.563 20 C 0.019 3.981 21 C -0.077 4.077 22 C -0.130 4.130 23 C 0.108 3.892 24 C 0.068 3.932 25 N -0.441 5.441 26 O -0.313 6.313 27 C 0.047 3.953 28 C -0.156 4.156 29 C -0.081 4.081 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.045 0.955 33 H 0.050 0.950 34 H 0.077 0.923 35 H 0.060 0.940 36 H 0.036 0.964 37 H 0.065 0.935 38 H 0.045 0.955 39 H 0.042 0.958 40 H 0.041 0.959 41 H 0.371 0.629 42 H 0.249 0.751 43 H 0.410 0.590 44 H 0.154 0.846 45 H 0.185 0.815 46 H 0.137 0.863 47 H 0.081 0.919 48 H 0.069 0.931 49 H 0.122 0.878 50 H 0.105 0.895 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.859 -12.235 -20.127 24.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.072 4.072 3 C -0.196 4.196 4 C -0.178 4.178 5 C 0.050 3.950 6 H 0.078 0.922 7 C 0.018 3.982 8 N -0.386 5.386 9 C -0.373 4.373 10 H 0.098 0.902 11 C -0.267 4.267 12 N -0.620 5.620 13 Si 0.803 3.197 14 H -0.214 1.214 15 H -0.226 1.226 16 H -0.192 1.192 17 N -0.335 5.335 18 C 0.358 3.642 19 O -0.443 6.443 20 C -0.117 4.117 21 C -0.098 4.098 22 C -0.138 4.138 23 C 0.058 3.942 24 C -0.095 4.095 25 N -0.153 5.153 26 O -0.225 6.225 27 C -0.027 4.027 28 C -0.193 4.193 29 C -0.118 4.118 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.096 0.904 35 H 0.079 0.921 36 H 0.055 0.945 37 H 0.084 0.916 38 H 0.064 0.936 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.203 0.797 42 H 0.057 0.943 43 H 0.246 0.754 44 H 0.171 0.829 45 H 0.201 0.799 46 H 0.155 0.845 47 H 0.099 0.901 48 H 0.088 0.912 49 H 0.140 0.860 50 H 0.123 0.877 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.770 -11.266 -19.876 23.339 hybrid contribution 0.464 -0.810 1.071 1.420 sum -4.306 -12.076 -18.805 22.759 Atomic orbital electron populations 1.21870 0.93410 1.01582 1.02550 1.20867 0.96786 0.96030 0.93492 1.21874 1.00875 0.93914 1.02891 1.21775 1.00455 0.99046 0.96478 1.21214 0.98160 0.80444 0.95131 0.92218 1.21233 0.97968 0.94449 0.84537 1.42545 1.66784 1.27717 1.01541 1.19637 1.27706 1.05307 0.84689 0.90218 1.25577 1.01699 0.97832 1.01630 1.69863 1.45228 1.18065 1.28888 0.85127 0.76820 0.78057 0.79656 1.21363 1.22566 1.19237 1.45755 1.28811 1.08067 1.50852 1.17920 0.83131 0.84388 0.78803 1.90720 1.25510 1.82312 1.45744 1.20994 0.95075 0.94817 1.00851 1.21951 0.99930 0.91401 0.96492 1.20434 0.95584 0.96114 1.01669 1.20005 0.92087 0.86321 0.95738 1.22735 1.00998 0.85402 1.00339 1.67486 1.11624 1.21435 1.14784 1.85979 1.64706 1.17449 1.54404 1.23479 0.95018 0.92401 0.91805 1.22279 0.95731 0.97487 1.03824 1.20635 1.00217 0.91031 0.99919 0.92147 0.90914 0.93611 0.93117 0.90440 0.92071 0.94530 0.91609 0.93614 0.94015 0.94139 0.79682 0.94274 0.75386 0.82863 0.79852 0.84490 0.90118 0.91232 0.86009 0.87720 0.88513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.50 7.97 71.98 0.57 -2.93 16 2 C -0.07 -2.00 0.62 -52.18 -0.03 -2.03 16 3 C -0.14 -3.44 8.12 71.98 0.58 -2.85 16 4 C -0.12 -3.46 7.00 71.99 0.50 -2.95 16 5 C 0.16 5.65 1.69 44.99 0.08 5.73 16 6 H 0.06 2.50 7.58 -2.39 -0.02 2.48 16 7 C 0.14 5.87 5.10 86.38 0.44 6.31 16 8 N -0.74 -38.93 5.43 -343.44 -1.87 -40.80 16 9 C -0.24 -13.71 9.99 84.04 0.84 -12.87 16 10 H 0.08 4.28 7.83 -2.91 -0.02 4.25 16 11 C -0.08 -4.43 5.50 84.86 0.47 -3.96 16 12 N -0.97 -61.50 13.06 21.65 0.28 -61.22 16 13 Si 0.97 47.15 29.55 68.60 2.03 49.18 16 14 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 15 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 16 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 17 N -0.69 -25.64 3.63 -445.32 -1.62 -27.26 16 18 C 0.57 21.61 6.16 86.81 0.53 22.15 16 19 O -0.56 -22.75 13.44 -3.87 -0.05 -22.80 16 20 C 0.02 0.64 6.75 41.86 0.28 0.92 16 21 C -0.08 -2.15 9.30 22.61 0.21 -1.94 16 22 C -0.13 -2.91 5.75 -19.78 -0.11 -3.02 16 23 C 0.11 2.57 6.50 22.69 0.15 2.71 16 24 C 0.07 1.89 11.12 85.09 0.95 2.84 16 25 N -0.44 -14.74 9.52 -184.33 -1.76 -16.50 16 26 O -0.31 -6.10 10.30 -88.35 -0.91 -7.01 16 27 C 0.05 0.49 7.01 72.11 0.51 0.99 16 28 C -0.16 -1.48 6.21 30.77 0.19 -1.29 16 29 C -0.08 -1.09 5.89 29.83 0.18 -0.91 16 30 H 0.06 1.57 6.32 -2.39 -0.02 1.56 16 31 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 32 H 0.04 1.25 7.60 -2.39 -0.02 1.23 16 33 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.06 1.54 6.54 -2.38 -0.02 1.53 16 36 H 0.04 1.15 5.77 -2.39 -0.01 1.14 16 37 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.04 1.45 7.53 -2.39 -0.02 1.43 16 39 H 0.04 1.67 6.71 -2.39 -0.02 1.65 16 40 H 0.04 1.58 6.17 -2.39 -0.01 1.57 16 41 H 0.37 21.41 7.33 -92.71 -0.68 20.73 16 42 H 0.25 15.33 8.31 -92.71 -0.77 14.56 16 43 H 0.41 15.86 7.93 -92.71 -0.73 15.13 16 44 H 0.15 4.02 7.64 -2.91 -0.02 4.00 16 45 H 0.18 4.26 8.06 -2.91 -0.02 4.23 16 46 H 0.14 0.72 8.14 -2.39 -0.02 0.70 16 47 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 48 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 49 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 50 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 51 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -73.64 399.68 1.98 -71.66 By element: Atomic # 1 Polarization: 48.31 SS G_CDS: -0.46 Total: 47.85 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: 6.33 Total: 6.89 kcal Atomic # 7 Polarization: -140.82 SS G_CDS: -4.96 Total: -145.78 kcal Atomic # 8 Polarization: -28.85 SS G_CDS: -0.96 Total: -29.81 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 2.03 Total: 49.18 kcal Total: -73.64 1.98 -71.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717970649.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.720 kcal (2) G-P(sol) polarization free energy of solvation -73.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds