Wall clock time and date at job start Wed Apr 1 2020 05:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46739 * 2 1 4 4 C 1.52995 * 109.47036 * 119.99435 * 2 1 3 5 5 H 1.08994 * 109.47618 * 304.87378 * 4 2 1 6 6 C 1.50701 * 109.47002 * 64.87555 * 4 2 1 7 7 O 1.21283 * 120.00111 * 34.41604 * 6 4 2 8 8 N 1.34781 * 120.00125 * 214.41598 * 6 4 2 9 9 C 1.47149 * 120.97844 * 354.45505 * 8 6 4 10 10 C 1.53298 * 108.38199 * 129.44660 * 9 8 6 11 11 O 1.42965 * 109.22464 * 52.30068 * 10 9 8 12 12 C 1.42969 * 114.16421 * 297.42078 * 11 10 9 13 13 H 1.08999 * 109.55416 * 302.63002 * 12 11 10 14 14 C 1.52991 * 109.50910 * 182.50599 * 12 11 10 15 15 N 1.46503 * 109.47584 * 65.25300 * 14 12 11 16 16 C 1.36933 * 119.99918 * 179.97438 * 15 14 12 17 17 H 1.07995 * 120.00346 * 0.02562 * 16 15 14 18 18 C 1.38817 * 119.99827 * 179.72337 * 16 15 14 19 19 N 1.31622 * 119.99794 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00369 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47158 * 89.99925 * 20 18 16 22 22 H 1.48490 * 109.47222 * 210.00198 * 20 18 16 23 23 H 1.48501 * 109.46956 * 330.00274 * 20 18 16 24 24 C 1.47150 * 120.98172 * 174.43678 * 8 6 4 25 25 C 1.50703 * 109.47208 * 184.87402 * 4 2 1 26 26 C 1.38667 * 120.41821 * 120.00283 * 25 4 2 27 27 C 1.38633 * 118.42069 * 180.02562 * 26 25 4 28 28 C 1.38231 * 119.16120 * 0.02562 * 27 26 25 29 29 N 1.31855 * 120.76241 * 359.97438 * 28 27 26 30 30 C 1.31893 * 121.72419 * 359.70580 * 29 28 27 31 31 H 1.09007 * 109.47262 * 54.98833 * 1 2 3 32 32 H 1.09000 * 109.46827 * 174.98253 * 1 2 3 33 33 H 1.09001 * 109.47257 * 294.98729 * 1 2 3 34 34 H 1.08993 * 109.47581 * 240.00204 * 2 1 3 35 35 H 1.09002 * 109.47202 * 179.97438 * 3 2 1 36 36 H 1.09000 * 109.47065 * 299.99670 * 3 2 1 37 37 H 1.08994 * 109.47438 * 59.99797 * 3 2 1 38 38 H 1.09001 * 109.68016 * 249.16755 * 9 8 6 39 39 H 1.08999 * 109.68713 * 9.72314 * 9 8 6 40 40 H 1.08997 * 109.51424 * 172.22301 * 10 9 8 41 41 H 1.09002 * 109.50954 * 292.32267 * 10 9 8 42 42 H 1.09009 * 109.47404 * 305.25016 * 14 12 11 43 43 H 1.09001 * 109.47280 * 185.25420 * 14 12 11 44 44 H 0.96993 * 119.99663 * 359.97438 * 15 14 12 45 45 H 0.97001 * 120.00431 * 180.02562 * 19 18 16 46 46 H 1.08999 * 109.68526 * 110.83031 * 24 8 6 47 47 H 1.09005 * 109.68313 * 350.27797 * 24 8 6 48 48 H 1.07993 * 120.79148 * 0.02562 * 26 25 4 49 49 H 1.07998 * 120.42132 * 179.97438 * 27 26 25 50 50 H 1.07997 * 119.62108 * 179.97438 * 28 27 26 51 51 H 1.08006 * 119.61446 * 180.31311 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 1.6071 -0.2602 2.1371 6 6 1.6386 -2.1725 1.1905 7 8 1.5959 -2.7471 0.1233 8 7 1.3271 -2.8320 2.3239 9 6 1.4873 -2.1937 3.6400 10 6 0.1789 -2.3614 4.4211 11 8 -0.1928 -3.7419 4.4259 12 6 -0.4593 -4.2808 3.1288 13 1 -1.2476 -3.7016 2.6480 14 6 -0.9053 -5.7381 3.2627 15 7 -2.1871 -5.7936 3.9700 16 6 -2.7861 -7.0018 4.2078 17 1 -2.3134 -7.9138 3.8742 18 6 -3.9978 -7.0549 4.8830 19 7 -4.5711 -5.9437 5.2943 20 14 -4.8147 -8.7030 5.2080 21 1 -4.3480 -9.2381 6.5122 22 1 -6.2886 -8.5263 5.2443 23 1 -4.4567 -9.6548 4.1258 24 6 0.8164 -4.2114 2.2816 25 6 3.5421 -0.6174 1.3111 26 6 4.1597 -0.0036 2.3904 27 6 5.5440 0.0693 2.4046 28 6 6.2576 -0.4679 1.3496 29 7 5.6366 -1.0445 0.3394 30 6 4.3217 -1.1374 0.2956 31 1 -0.3634 0.5896 -0.8417 32 1 -0.3633 -1.0237 -0.0899 33 1 -0.3634 0.4341 0.9315 34 1 1.8934 -0.5138 -0.8899 35 1 3.1299 1.4427 0.0005 36 1 1.6766 1.9563 -0.8900 37 1 1.6766 1.9564 0.8899 38 1 2.3028 -2.6716 4.1829 39 1 1.7038 -1.1334 3.5100 40 1 0.3203 -2.0189 5.4461 41 1 -0.6066 -1.7737 3.9460 42 1 -0.1563 -6.2973 3.8236 43 1 -1.0183 -6.1761 2.2710 44 1 -2.6113 -4.9746 4.2699 45 1 -5.4176 -5.9807 5.7665 46 1 1.5643 -4.8924 2.6877 47 1 0.5887 -4.4872 1.2519 48 1 3.5761 0.4078 3.2006 49 1 6.0584 0.5407 3.2290 50 1 7.3363 -0.4149 1.3529 51 1 3.8486 -1.6213 -0.5462 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724827358.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:04 Heat of formation + Delta-G solvation = -31.069535 kcal Electronic energy + Delta-G solvation = -31547.155436 eV Core-core repulsion = 27446.961380 eV Total energy + Delta-G solvation = -4100.194056 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.32500 -40.04028 -38.57994 -36.37158 -35.13429 -34.43570 -32.95043 -32.27175 -31.83843 -30.25648 -28.72496 -27.63903 -27.29900 -25.45607 -24.05960 -23.52695 -23.06448 -22.43769 -21.09881 -20.50168 -19.11280 -17.76508 -17.54396 -17.10499 -16.60206 -16.38897 -16.08861 -16.02238 -15.22859 -15.13636 -14.83289 -14.62488 -14.49145 -14.32296 -13.90088 -13.77849 -13.47264 -13.24420 -13.17962 -12.98721 -12.89595 -12.72510 -12.49058 -12.46877 -12.33221 -12.01176 -11.63841 -11.44718 -11.25453 -11.04745 -10.96940 -10.89442 -10.80374 -10.52219 -10.29535 -10.08771 -9.95299 -9.88925 -9.76505 -9.68787 -9.23019 -8.87087 -8.59648 -6.89888 -5.73369 -3.02068 0.69429 0.89322 2.38886 2.67786 3.42704 3.45976 3.50778 3.52574 3.87872 4.03307 4.11741 4.28371 4.35919 4.44108 4.55614 4.56709 4.62206 4.68414 4.74648 4.80048 4.93687 5.00103 5.06626 5.10553 5.19092 5.27032 5.28857 5.35450 5.42051 5.44016 5.55646 5.59508 5.60446 5.62118 5.65263 5.69771 5.79832 5.80964 5.85243 5.92322 6.02464 6.03816 6.23929 6.27104 6.32176 6.54605 6.68028 7.16309 7.41896 7.63154 7.71849 7.94028 8.44719 9.56487 10.13130 10.49044 11.49491 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019239 B = 0.002326 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.053411 B =12032.859418 C =12401.937497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.077 4.077 3 C -0.145 4.145 4 C -0.061 4.061 5 H 0.101 0.899 6 C 0.527 3.473 7 O -0.531 6.531 8 N -0.610 5.610 9 C 0.069 3.931 10 C 0.045 3.955 11 O -0.357 6.357 12 C 0.074 3.926 13 H 0.064 0.936 14 C 0.163 3.837 15 N -0.726 5.726 16 C -0.239 4.239 17 H 0.071 0.929 18 C -0.014 4.014 19 N -0.932 5.932 20 Si 0.908 3.092 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.282 1.282 24 C 0.086 3.914 25 C -0.124 4.124 26 C -0.069 4.069 27 C -0.171 4.171 28 C 0.095 3.905 29 N -0.481 5.481 30 C 0.116 3.884 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.087 0.913 35 H 0.054 0.946 36 H 0.060 0.940 37 H 0.055 0.945 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.104 0.896 41 H 0.054 0.946 42 H 0.029 0.971 43 H 0.036 0.964 44 H 0.387 0.613 45 H 0.255 0.745 46 H 0.077 0.923 47 H 0.102 0.898 48 H 0.135 0.865 49 H 0.137 0.863 50 H 0.155 0.845 51 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.752 19.465 -6.644 28.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.096 4.096 3 C -0.202 4.202 4 C -0.083 4.083 5 H 0.119 0.881 6 C 0.314 3.686 7 O -0.408 6.408 8 N -0.344 5.344 9 C -0.054 4.054 10 C -0.033 4.033 11 O -0.275 6.275 12 C 0.016 3.984 13 H 0.082 0.918 14 C 0.035 3.965 15 N -0.371 5.371 16 C -0.370 4.370 17 H 0.089 0.911 18 C -0.210 4.210 19 N -0.581 5.581 20 Si 0.739 3.261 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.207 1.207 24 C -0.037 4.037 25 C -0.126 4.126 26 C -0.095 4.095 27 C -0.191 4.191 28 C -0.062 4.062 29 N -0.189 5.189 30 C -0.041 4.041 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.105 0.895 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.097 0.903 39 H 0.108 0.892 40 H 0.122 0.878 41 H 0.073 0.927 42 H 0.047 0.953 43 H 0.054 0.946 44 H 0.221 0.779 45 H 0.064 0.936 46 H 0.095 0.905 47 H 0.120 0.880 48 H 0.153 0.847 49 H 0.154 0.846 50 H 0.173 0.827 51 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 20.175 18.509 -7.746 28.454 hybrid contribution -1.051 -0.027 1.083 1.509 sum 19.125 18.482 -6.662 27.418 Atomic orbital electron populations 1.21880 0.94201 1.02683 1.02058 1.21031 0.96382 0.95830 0.96375 1.21847 1.00999 0.95242 1.02119 1.20437 0.92146 0.93635 1.02041 0.88089 1.20318 0.76598 0.88140 0.83505 1.90698 1.52605 1.68829 1.28648 1.48154 1.64926 1.15280 1.05998 1.22593 0.99993 0.98786 0.84014 1.22920 0.94148 0.85147 1.01078 1.88172 1.88288 1.23028 1.27971 1.22805 0.94360 0.97729 0.83549 0.91809 1.20618 0.89835 0.89680 0.96372 1.42223 1.19852 1.06948 1.68051 1.19226 1.01676 0.85926 1.30172 0.91128 1.24744 0.98042 0.96984 1.01220 1.69673 1.18959 1.25351 1.44128 0.86172 0.78608 0.83271 0.78043 1.21723 1.21797 1.20741 1.22363 0.96628 0.81779 1.02941 1.20403 0.94881 1.00782 0.96534 1.21498 0.94906 0.96151 0.96948 1.22135 0.94616 1.01811 1.00516 1.22853 1.00646 0.93271 0.89392 1.67780 1.10697 1.14738 1.25708 1.22802 0.88997 0.94774 0.97542 0.91936 0.92065 0.92627 0.89484 0.92708 0.92093 0.92542 0.90287 0.89241 0.87773 0.92740 0.95271 0.94614 0.77933 0.93560 0.90466 0.87982 0.84702 0.84556 0.82731 0.82346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 8.92 37.16 0.33 -1.02 16 2 C -0.08 -0.67 2.02 -90.62 -0.18 -0.85 16 3 C -0.14 -0.99 8.88 37.16 0.33 -0.66 16 4 C -0.06 -0.54 1.33 -92.92 -0.12 -0.66 16 5 H 0.10 0.71 5.73 -51.93 -0.30 0.41 16 6 C 0.53 6.46 5.50 -10.98 -0.06 6.40 16 7 O -0.53 -8.15 14.93 5.56 0.08 -8.07 16 8 N -0.61 -7.47 3.02 -172.28 -0.52 -7.99 16 9 C 0.07 0.67 6.53 -3.53 -0.02 0.64 16 10 C 0.05 0.53 6.98 37.31 0.26 0.79 16 11 O -0.36 -6.06 10.34 -35.23 -0.36 -6.42 16 12 C 0.07 1.25 2.81 -26.58 -0.07 1.18 16 13 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 14 C 0.16 3.35 5.93 -4.05 -0.02 3.32 16 15 N -0.73 -18.92 5.55 -59.91 -0.33 -19.25 16 16 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 17 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 18 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 19 N -0.93 -28.63 13.06 55.49 0.72 -27.90 16 20 Si 0.91 22.69 29.55 -169.99 -5.02 17.66 16 21 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 22 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 C 0.09 1.22 5.91 -3.54 -0.02 1.20 16 25 C -0.12 -1.08 3.29 -104.48 -0.34 -1.42 16 26 C -0.07 -0.47 9.81 -39.28 -0.39 -0.85 16 27 C -0.17 -1.10 10.11 -39.44 -0.40 -1.50 16 28 C 0.10 0.77 11.18 -17.54 -0.20 0.57 16 29 N -0.48 -5.23 10.36 -13.25 -0.14 -5.36 16 30 C 0.12 1.23 10.02 -17.55 -0.18 1.06 16 31 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 32 H 0.06 0.69 7.34 -51.93 -0.38 0.31 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.09 0.88 7.15 -51.93 -0.37 0.51 16 35 H 0.05 0.40 7.06 -51.93 -0.37 0.04 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.09 0.59 5.40 -51.93 -0.28 0.31 16 40 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.03 0.61 8.14 -51.92 -0.42 0.19 16 43 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.39 10.68 7.67 -40.82 -0.31 10.36 16 45 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 46 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 47 H 0.10 1.52 7.13 -51.93 -0.37 1.15 16 48 H 0.14 0.57 8.00 -52.49 -0.42 0.15 16 49 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 50 H 0.16 0.84 8.06 -52.49 -0.42 0.42 16 51 H 0.16 1.81 7.21 -52.48 -0.38 1.43 16 LS Contribution 407.33 15.07 6.14 6.14 Total: -1.00 -34.82 407.33 -8.99 -43.81 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -8.22 Total: 6.66 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -1.33 Total: 0.73 kcal Atomic # 7 Polarization: -60.24 SS G_CDS: -0.27 Total: -60.51 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: -0.28 Total: -14.49 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -34.82 -8.99 -43.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724827358.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.739 kcal (2) G-P(sol) polarization free energy of solvation -34.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds