Wall clock time and date at job start Wed Apr 1 2020 05:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46739 * 2 1 4 4 C 1.52995 * 109.47036 * 119.99435 * 2 1 3 5 5 H 1.08994 * 109.47618 * 304.87378 * 4 2 1 6 6 C 1.50701 * 109.47002 * 64.87555 * 4 2 1 7 7 O 1.21283 * 120.00111 * 34.41604 * 6 4 2 8 8 N 1.34781 * 120.00125 * 214.41598 * 6 4 2 9 9 C 1.47149 * 120.97844 * 354.45505 * 8 6 4 10 10 C 1.53298 * 108.38199 * 129.44660 * 9 8 6 11 11 O 1.42965 * 109.22464 * 52.30068 * 10 9 8 12 12 C 1.42969 * 114.16421 * 297.42078 * 11 10 9 13 13 H 1.08999 * 109.55416 * 302.63002 * 12 11 10 14 14 C 1.52991 * 109.50910 * 182.50599 * 12 11 10 15 15 N 1.46503 * 109.47584 * 65.25300 * 14 12 11 16 16 C 1.36933 * 119.99918 * 179.97438 * 15 14 12 17 17 H 1.07995 * 120.00346 * 0.02562 * 16 15 14 18 18 C 1.38817 * 119.99827 * 179.72337 * 16 15 14 19 19 N 1.31622 * 119.99794 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00369 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47158 * 89.99925 * 20 18 16 22 22 H 1.48490 * 109.47222 * 210.00198 * 20 18 16 23 23 H 1.48501 * 109.46956 * 330.00274 * 20 18 16 24 24 C 1.47150 * 120.98172 * 174.43678 * 8 6 4 25 25 C 1.50703 * 109.47208 * 184.87402 * 4 2 1 26 26 C 1.38667 * 120.41821 * 120.00283 * 25 4 2 27 27 C 1.38633 * 118.42069 * 180.02562 * 26 25 4 28 28 C 1.38231 * 119.16120 * 0.02562 * 27 26 25 29 29 N 1.31855 * 120.76241 * 359.97438 * 28 27 26 30 30 C 1.31893 * 121.72419 * 359.70580 * 29 28 27 31 31 H 1.09007 * 109.47262 * 54.98833 * 1 2 3 32 32 H 1.09000 * 109.46827 * 174.98253 * 1 2 3 33 33 H 1.09001 * 109.47257 * 294.98729 * 1 2 3 34 34 H 1.08993 * 109.47581 * 240.00204 * 2 1 3 35 35 H 1.09002 * 109.47202 * 179.97438 * 3 2 1 36 36 H 1.09000 * 109.47065 * 299.99670 * 3 2 1 37 37 H 1.08994 * 109.47438 * 59.99797 * 3 2 1 38 38 H 1.09001 * 109.68016 * 249.16755 * 9 8 6 39 39 H 1.08999 * 109.68713 * 9.72314 * 9 8 6 40 40 H 1.08997 * 109.51424 * 172.22301 * 10 9 8 41 41 H 1.09002 * 109.50954 * 292.32267 * 10 9 8 42 42 H 1.09009 * 109.47404 * 305.25016 * 14 12 11 43 43 H 1.09001 * 109.47280 * 185.25420 * 14 12 11 44 44 H 0.96993 * 119.99663 * 359.97438 * 15 14 12 45 45 H 0.97001 * 120.00431 * 180.02562 * 19 18 16 46 46 H 1.08999 * 109.68526 * 110.83031 * 24 8 6 47 47 H 1.09005 * 109.68313 * 350.27797 * 24 8 6 48 48 H 1.07993 * 120.79148 * 0.02562 * 26 25 4 49 49 H 1.07998 * 120.42132 * 179.97438 * 27 26 25 50 50 H 1.07997 * 119.62108 * 179.97438 * 28 27 26 51 51 H 1.08006 * 119.61446 * 180.31311 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 1.6071 -0.2602 2.1371 6 6 1.6386 -2.1725 1.1905 7 8 1.5959 -2.7471 0.1233 8 7 1.3271 -2.8320 2.3239 9 6 1.4873 -2.1937 3.6400 10 6 0.1789 -2.3614 4.4211 11 8 -0.1928 -3.7419 4.4259 12 6 -0.4593 -4.2808 3.1288 13 1 -1.2476 -3.7016 2.6480 14 6 -0.9053 -5.7381 3.2627 15 7 -2.1871 -5.7936 3.9700 16 6 -2.7861 -7.0018 4.2078 17 1 -2.3134 -7.9138 3.8742 18 6 -3.9978 -7.0549 4.8830 19 7 -4.5711 -5.9437 5.2943 20 14 -4.8147 -8.7030 5.2080 21 1 -4.3480 -9.2381 6.5122 22 1 -6.2886 -8.5263 5.2443 23 1 -4.4567 -9.6548 4.1258 24 6 0.8164 -4.2114 2.2816 25 6 3.5421 -0.6174 1.3111 26 6 4.1597 -0.0036 2.3904 27 6 5.5440 0.0693 2.4046 28 6 6.2576 -0.4679 1.3496 29 7 5.6366 -1.0445 0.3394 30 6 4.3217 -1.1374 0.2956 31 1 -0.3634 0.5896 -0.8417 32 1 -0.3633 -1.0237 -0.0899 33 1 -0.3634 0.4341 0.9315 34 1 1.8934 -0.5138 -0.8899 35 1 3.1299 1.4427 0.0005 36 1 1.6766 1.9563 -0.8900 37 1 1.6766 1.9564 0.8899 38 1 2.3028 -2.6716 4.1829 39 1 1.7038 -1.1334 3.5100 40 1 0.3203 -2.0189 5.4461 41 1 -0.6066 -1.7737 3.9460 42 1 -0.1563 -6.2973 3.8236 43 1 -1.0183 -6.1761 2.2710 44 1 -2.6113 -4.9746 4.2699 45 1 -5.4176 -5.9807 5.7665 46 1 1.5643 -4.8924 2.6877 47 1 0.5887 -4.4872 1.2519 48 1 3.5761 0.4078 3.2006 49 1 6.0584 0.5407 3.2290 50 1 7.3363 -0.4149 1.3529 51 1 3.8486 -1.6213 -0.5462 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724827358.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:03 Heat of formation + Delta-G solvation = -54.703117 kcal Electronic energy + Delta-G solvation = -31548.180265 eV Core-core repulsion = 27446.961380 eV Total energy + Delta-G solvation = -4101.218885 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.13269 -40.88482 -39.65366 -37.14776 -36.70210 -35.80511 -33.96942 -33.53241 -32.49572 -31.90423 -29.63192 -28.75601 -27.96906 -26.90995 -25.00813 -24.62303 -24.10006 -23.44956 -22.44704 -21.39218 -19.97447 -19.25874 -18.57932 -18.13005 -17.77537 -17.18887 -17.08249 -16.79850 -16.69894 -16.14594 -15.97437 -15.84603 -15.44766 -15.25224 -15.03434 -14.85654 -14.57689 -14.38393 -14.20957 -14.00503 -13.91643 -13.71717 -13.59006 -13.37528 -13.10609 -13.02657 -12.79350 -12.74422 -12.61646 -12.27849 -12.13896 -12.05877 -11.93082 -11.87759 -11.67403 -11.62287 -11.22403 -11.01157 -10.97098 -10.63796 -10.39330 -9.90525 -9.66530 -9.02443 -7.95175 -5.24755 0.08832 0.33529 1.44994 1.47438 1.49677 1.58039 1.73423 2.55712 2.73580 2.80490 3.34054 3.38670 3.41218 3.53228 3.61328 3.68714 3.79002 3.90418 3.92758 4.03599 4.04472 4.07183 4.14574 4.19120 4.29210 4.33354 4.36647 4.48088 4.52432 4.60800 4.64237 4.66392 4.73047 4.77123 4.83417 4.85831 4.91766 4.94556 4.97949 5.06153 5.18021 5.18107 5.22568 5.24364 5.33900 5.41217 5.47519 5.75914 6.21719 6.23644 6.27145 6.98286 7.02414 7.32608 8.05581 8.30996 9.28518 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019239 B = 0.002326 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.053411 B =12032.859418 C =12401.937497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.076 4.076 3 C -0.136 4.136 4 C -0.050 4.050 5 H 0.131 0.869 6 C 0.523 3.477 7 O -0.571 6.571 8 N -0.613 5.613 9 C 0.073 3.927 10 C 0.037 3.963 11 O -0.388 6.388 12 C 0.091 3.909 13 H 0.050 0.950 14 C 0.160 3.840 15 N -0.739 5.739 16 C -0.248 4.248 17 H 0.077 0.923 18 C -0.075 4.075 19 N -0.969 5.969 20 Si 0.977 3.023 21 H -0.286 1.286 22 H -0.294 1.294 23 H -0.269 1.269 24 C 0.095 3.905 25 C -0.126 4.126 26 C -0.064 4.064 27 C -0.160 4.160 28 C 0.082 3.918 29 N -0.516 5.516 30 C 0.093 3.907 31 H 0.069 0.931 32 H 0.030 0.970 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.049 0.951 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.088 0.912 39 H 0.129 0.871 40 H 0.130 0.870 41 H 0.055 0.945 42 H 0.029 0.971 43 H 0.041 0.959 44 H 0.375 0.625 45 H 0.252 0.748 46 H 0.081 0.919 47 H 0.089 0.911 48 H 0.172 0.828 49 H 0.172 0.828 50 H 0.176 0.824 51 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.233 21.433 -4.834 30.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.095 4.095 3 C -0.193 4.193 4 C -0.071 4.071 5 H 0.148 0.852 6 C 0.312 3.688 7 O -0.450 6.450 8 N -0.346 5.346 9 C -0.049 4.049 10 C -0.040 4.040 11 O -0.307 6.307 12 C 0.032 3.968 13 H 0.068 0.932 14 C 0.033 3.967 15 N -0.382 5.382 16 C -0.380 4.380 17 H 0.095 0.905 18 C -0.268 4.268 19 N -0.619 5.619 20 Si 0.805 3.195 21 H -0.213 1.213 22 H -0.220 1.220 23 H -0.194 1.194 24 C -0.028 4.028 25 C -0.129 4.129 26 C -0.089 4.089 27 C -0.179 4.179 28 C -0.075 4.075 29 N -0.225 5.225 30 C -0.064 4.064 31 H 0.088 0.912 32 H 0.049 0.951 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.107 0.893 39 H 0.147 0.853 40 H 0.148 0.852 41 H 0.074 0.926 42 H 0.047 0.953 43 H 0.059 0.941 44 H 0.207 0.793 45 H 0.061 0.939 46 H 0.099 0.901 47 H 0.107 0.893 48 H 0.190 0.810 49 H 0.190 0.810 50 H 0.193 0.807 51 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 21.700 20.483 -5.947 30.428 hybrid contribution -1.401 -0.593 0.503 1.602 sum 20.299 19.890 -5.444 28.936 Atomic orbital electron populations 1.21865 0.94488 1.00985 1.03271 1.20989 0.96024 0.96953 0.95506 1.21773 1.00611 0.93704 1.03249 1.20431 0.92616 0.90880 1.03183 0.85184 1.21011 0.75601 0.89449 0.82736 1.90681 1.54138 1.69958 1.30218 1.48261 1.64533 1.14434 1.07329 1.22776 0.98989 1.00952 0.82178 1.23266 0.95198 0.82403 1.03173 1.88105 1.88758 1.26127 1.27665 1.22406 0.95048 0.95101 0.84211 0.93190 1.20749 0.87620 0.92679 0.95677 1.42398 1.21510 1.05793 1.68507 1.19650 1.01893 0.87018 1.29412 0.90542 1.25608 0.98907 1.00582 1.01674 1.69832 1.19278 1.27507 1.45316 0.85095 0.77088 0.79194 0.78102 1.21277 1.22016 1.19410 1.22045 0.95591 0.83681 1.01521 1.20331 0.94259 1.01388 0.96911 1.21924 0.95442 0.94859 0.96705 1.22524 0.94610 1.00303 1.00491 1.23342 1.01891 0.92914 0.89314 1.67701 1.10950 1.16282 1.27594 1.22556 0.89476 0.96320 0.98033 0.91217 0.95106 0.90978 0.92014 0.93162 0.91811 0.90578 0.89349 0.85343 0.85188 0.92628 0.95327 0.94105 0.79269 0.93938 0.90101 0.89263 0.81013 0.81040 0.80710 0.84963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 8.92 71.98 0.64 -1.94 16 2 C -0.08 -1.26 2.02 -10.79 -0.02 -1.28 16 3 C -0.14 -1.58 8.88 71.98 0.64 -0.94 16 4 C -0.05 -0.78 1.33 -12.29 -0.02 -0.80 16 5 H 0.13 1.24 5.73 -2.39 -0.01 1.23 16 6 C 0.52 12.70 5.50 87.66 0.48 13.18 16 7 O -0.57 -18.52 14.93 -3.04 -0.05 -18.56 16 8 N -0.61 -14.40 3.02 -817.35 -2.47 -16.87 16 9 C 0.07 1.17 6.53 86.36 0.56 1.73 16 10 C 0.04 0.77 6.98 72.08 0.50 1.27 16 11 O -0.39 -12.97 10.34 -148.98 -1.54 -14.51 16 12 C 0.09 3.13 2.81 30.69 0.09 3.21 16 13 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 14 C 0.16 6.70 5.93 86.38 0.51 7.21 16 15 N -0.74 -39.32 5.55 -343.45 -1.91 -41.23 16 16 C -0.25 -14.30 9.99 84.04 0.84 -13.46 16 17 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 18 C -0.08 -4.43 5.50 84.86 0.47 -3.97 16 19 N -0.97 -60.44 13.06 21.65 0.28 -60.16 16 20 Si 0.98 46.91 29.55 68.60 2.03 48.94 16 21 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 22 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16 23 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 24 C 0.10 2.76 5.91 86.35 0.51 3.27 16 25 C -0.13 -1.96 3.29 -19.77 -0.07 -2.02 16 26 C -0.06 -0.58 9.81 22.47 0.22 -0.36 16 27 C -0.16 -1.39 10.11 22.36 0.23 -1.17 16 28 C 0.08 1.15 11.18 84.69 0.95 2.10 16 29 N -0.52 -11.17 10.36 -195.83 -2.03 -13.19 16 30 C 0.09 2.00 10.02 84.67 0.85 2.85 16 31 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 32 H 0.03 0.71 7.34 -2.39 -0.02 0.69 16 33 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.06 1.34 7.15 -2.39 -0.02 1.32 16 35 H 0.05 0.65 7.06 -2.39 -0.02 0.63 16 36 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.13 1.03 5.40 -2.39 -0.01 1.02 16 40 H 0.13 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 43 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.38 21.33 7.67 -92.71 -0.71 20.62 16 45 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 46 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 47 H 0.09 2.80 7.13 -2.38 -0.02 2.78 16 48 H 0.17 0.30 8.00 -2.91 -0.02 0.27 16 49 H 0.17 0.29 8.06 -2.91 -0.02 0.27 16 50 H 0.18 1.51 8.06 -2.91 -0.02 1.48 16 51 H 0.13 3.39 7.21 -2.91 -0.02 3.37 16 Total: -1.00 -79.32 407.33 1.92 -77.40 By element: Atomic # 1 Polarization: 29.06 SS G_CDS: 0.22 Total: 29.28 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: 7.38 Total: 8.90 kcal Atomic # 7 Polarization: -125.32 SS G_CDS: -6.12 Total: -131.45 kcal Atomic # 8 Polarization: -31.48 SS G_CDS: -1.59 Total: -33.07 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 2.03 Total: 48.94 kcal Total: -79.32 1.92 -77.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724827358.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.693 kcal (2) G-P(sol) polarization free energy of solvation -79.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds