Wall clock time and date at job start Wed Apr 1 2020 05:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47165 * 2 1 4 4 C 1.52998 * 109.47365 * 119.99972 * 2 1 3 5 5 H 1.09000 * 109.46992 * 59.99928 * 4 2 1 6 6 C 1.53006 * 109.47287 * 299.99937 * 4 2 1 7 7 C 1.53001 * 109.47149 * 175.00138 * 6 4 2 8 8 N 1.46501 * 109.46781 * 180.02562 * 7 6 4 9 9 C 1.46501 * 120.00028 * 89.99823 * 8 7 6 10 10 C 1.34778 * 119.99621 * 269.99473 * 8 7 6 11 11 O 1.21549 * 120.00254 * 6.96224 * 10 8 7 12 12 C 1.47865 * 119.99693 * 186.96024 * 10 8 7 13 13 C 1.39700 * 120.07339 * 20.38051 * 12 10 8 14 14 C 1.38052 * 120.14343 * 179.73743 * 13 12 10 15 15 C 1.38094 * 120.29639 * 0.51420 * 14 13 12 16 16 C 1.39661 * 120.14508 * 359.76578 * 15 14 13 17 17 C 1.47863 * 120.07489 * 179.97438 * 16 15 14 18 18 N 1.34776 * 119.99984 * 0.02562 * 17 16 15 19 19 O 1.21556 * 119.99812 * 180.02562 * 17 16 15 20 20 C 1.39289 * 120.07142 * 200.65275 * 12 10 8 21 21 N 1.46502 * 109.47319 * 180.02562 * 4 2 1 22 22 C 1.36940 * 119.99817 * 274.99885 * 21 4 2 23 23 H 1.07991 * 120.00328 * 0.02562 * 22 21 4 24 24 C 1.38812 * 119.99988 * 179.97438 * 22 21 4 25 25 N 1.31616 * 120.00239 * 179.72459 * 24 22 21 26 26 Si 1.86801 * 119.99709 * 0.02562 * 24 22 21 27 27 H 1.48500 * 109.47278 * 269.72110 * 26 24 22 28 28 H 1.48499 * 109.47375 * 29.72493 * 26 24 22 29 29 H 1.48507 * 109.46978 * 149.72389 * 26 24 22 30 30 H 1.08999 * 109.47525 * 59.99924 * 1 2 3 31 31 H 1.09003 * 109.46920 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47194 * 299.99689 * 1 2 3 33 33 H 1.09004 * 109.47194 * 240.00311 * 2 1 3 34 34 H 1.09000 * 109.47421 * 180.02562 * 3 2 1 35 35 H 1.08998 * 109.47054 * 299.99875 * 3 2 1 36 36 H 1.08993 * 109.47279 * 59.99994 * 3 2 1 37 37 H 1.09003 * 109.46727 * 294.99742 * 6 4 2 38 38 H 1.08995 * 109.46556 * 54.99539 * 6 4 2 39 39 H 1.08998 * 109.46534 * 300.00021 * 7 6 4 40 40 H 1.08998 * 109.47324 * 59.99469 * 7 6 4 41 41 H 1.08996 * 109.46802 * 86.40984 * 9 8 7 42 42 H 1.09000 * 109.46626 * 206.40774 * 9 8 7 43 43 H 1.08994 * 109.47345 * 326.40886 * 9 8 7 44 44 H 1.08003 * 119.93032 * 359.97438 * 13 12 10 45 45 H 1.08009 * 119.85366 * 180.25801 * 14 13 12 46 46 H 1.08005 * 119.93152 * 179.74347 * 15 14 13 47 47 H 0.96996 * 120.00309 * 0.02562 * 18 17 16 48 48 H 0.97003 * 120.00036 * 179.97438 * 18 17 16 49 49 H 1.08003 * 120.14739 * 359.97438 * 20 12 10 50 50 H 0.97001 * 120.00215 * 94.99466 * 21 4 2 51 51 H 0.96997 * 120.00006 * 180.27636 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6767 -1.7489 1.2492 6 6 1.5301 0.0000 2.4985 7 6 1.9349 -0.7901 3.7446 8 7 1.4461 -0.0998 4.9407 9 6 0.1178 -0.4110 5.4747 10 6 2.2184 0.8215 5.5499 11 8 3.2641 1.1720 5.0388 12 6 1.7937 1.4060 6.8400 13 6 0.8579 0.7407 7.6357 14 6 0.4643 1.2824 8.8429 15 6 0.9840 2.4894 9.2674 16 6 1.9159 3.1679 8.4789 17 6 2.4709 4.4604 8.9346 18 7 2.0780 4.9848 10.1123 19 8 3.2816 5.0499 8.2470 20 6 2.3215 2.6241 7.2619 21 7 3.5050 -0.7207 1.2495 22 6 4.1902 -1.6918 0.5693 23 1 3.6507 -2.4578 0.0323 24 6 5.5783 -1.6910 0.5691 25 7 6.2369 -2.6275 -0.0801 26 14 6.5116 -0.3656 1.4974 27 1 6.7642 0.7863 0.5948 28 1 5.7061 0.0845 2.6609 29 1 7.8067 -0.9140 1.9744 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4426 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8899 37 1 1.9648 0.9986 2.5444 38 1 0.4438 0.0783 2.4548 39 1 1.5003 -1.7887 3.6986 40 1 3.0212 -0.8684 3.7882 41 1 0.1884 -1.2638 6.1499 42 1 -0.2665 0.4520 6.0183 43 1 -0.5565 -0.6528 4.6532 44 1 0.4442 -0.2015 7.3075 45 1 -0.2564 0.7619 9.4564 46 1 0.6688 2.9098 10.2110 47 1 1.4314 4.5142 10.6612 48 1 2.4423 5.8325 10.4115 49 1 3.0423 3.1444 6.6486 50 1 3.9897 -0.0324 1.7315 51 1 7.2068 -2.6293 -0.0769 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725212442.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:42 Heat of formation + Delta-G solvation = -16.677008 kcal Electronic energy + Delta-G solvation = -30942.201149 eV Core-core repulsion = 26842.631200 eV Total energy + Delta-G solvation = -4099.569949 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.90557 -39.81899 -38.19911 -37.46017 -35.73317 -34.29627 -33.11928 -32.24498 -31.48113 -30.91963 -29.77557 -27.34661 -26.63710 -25.68353 -24.47940 -23.72312 -22.38572 -21.91897 -21.27579 -19.77717 -18.45658 -18.44293 -17.53525 -17.28193 -17.02470 -16.43375 -16.09785 -15.62490 -15.10945 -14.92853 -14.71240 -14.67698 -14.37236 -14.14457 -13.94159 -13.62046 -13.46736 -13.36302 -13.19856 -12.95127 -12.79299 -12.54724 -12.29680 -11.89030 -11.79948 -11.67535 -11.42133 -11.31067 -11.00901 -10.87206 -10.49051 -10.44512 -10.40085 -10.25391 -10.15489 -9.99058 -9.90335 -9.61752 -9.46711 -9.44393 -9.37703 -8.84381 -8.59147 -7.13615 -5.67581 -3.01757 0.25378 0.70413 2.26465 2.81772 2.92803 3.09890 3.51514 3.53629 3.58818 3.64650 4.16327 4.25822 4.34761 4.58196 4.63698 4.72092 4.90055 4.95570 5.06637 5.13987 5.26066 5.33975 5.40900 5.42258 5.46245 5.52896 5.68012 5.74048 5.76624 5.78813 5.83773 5.87635 5.90157 6.04134 6.09105 6.24154 6.26017 6.30893 6.33454 6.36832 6.40766 6.52983 6.63117 6.77733 6.83808 6.85883 7.03077 7.08673 7.33773 7.82541 8.09460 8.15248 8.52115 9.32191 10.05504 10.25652 11.50681 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011410 B = 0.002826 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.366359 B = 9904.961544 C =10896.976745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.114 4.114 3 C -0.138 4.138 4 C 0.191 3.809 5 H 0.054 0.946 6 C -0.142 4.142 7 C 0.118 3.882 8 N -0.610 5.610 9 C 0.064 3.936 10 C 0.550 3.450 11 O -0.515 6.515 12 C -0.133 4.133 13 C -0.083 4.083 14 C -0.137 4.137 15 C -0.067 4.067 16 C -0.150 4.150 17 C 0.564 3.436 18 N -0.852 5.852 19 O -0.531 6.531 20 C -0.002 4.002 21 N -0.745 5.745 22 C -0.239 4.239 23 H 0.089 0.911 24 C 0.007 3.993 25 N -0.936 5.936 26 Si 0.873 3.127 27 H -0.286 1.286 28 H -0.268 1.268 29 H -0.293 1.293 30 H 0.043 0.957 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.038 0.962 36 H 0.043 0.957 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.077 0.923 40 H 0.095 0.905 41 H 0.062 0.938 42 H 0.082 0.918 43 H 0.074 0.926 44 H 0.158 0.842 45 H 0.136 0.864 46 H 0.129 0.871 47 H 0.400 0.600 48 H 0.406 0.594 49 H 0.149 0.851 50 H 0.364 0.636 51 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.645 9.211 22.665 32.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.136 4.136 3 C -0.195 4.195 4 C 0.081 3.919 5 H 0.072 0.928 6 C -0.181 4.181 7 C -0.003 4.003 8 N -0.343 5.343 9 C -0.079 4.079 10 C 0.337 3.663 11 O -0.391 6.391 12 C -0.137 4.137 13 C -0.101 4.101 14 C -0.155 4.155 15 C -0.086 4.086 16 C -0.153 4.153 17 C 0.349 3.651 18 N -0.417 5.417 19 O -0.408 6.408 20 C -0.022 4.022 21 N -0.388 5.388 22 C -0.369 4.369 23 H 0.107 0.893 24 C -0.189 4.189 25 N -0.584 5.584 26 Si 0.703 3.297 27 H -0.212 1.212 28 H -0.193 1.193 29 H -0.220 1.220 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.057 0.943 36 H 0.063 0.937 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.096 0.904 40 H 0.113 0.887 41 H 0.080 0.920 42 H 0.100 0.900 43 H 0.093 0.907 44 H 0.175 0.825 45 H 0.154 0.846 46 H 0.147 0.853 47 H 0.229 0.771 48 H 0.237 0.763 49 H 0.166 0.834 50 H 0.198 0.802 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -19.480 9.414 21.680 30.628 hybrid contribution 0.515 1.002 1.059 1.546 sum -18.965 10.416 22.738 31.388 Atomic orbital electron populations 1.21893 0.96865 1.00832 1.00625 1.21741 0.93527 0.96919 1.01377 1.21729 1.02121 0.96016 0.99657 1.20129 0.84778 0.96557 0.90442 0.92820 1.22305 1.00338 1.00588 0.94848 1.21657 1.02054 0.94434 0.82152 1.47821 1.16735 1.40524 1.29246 1.22407 0.84468 1.00863 1.00146 1.18266 0.84265 0.79591 0.84157 1.90882 1.23661 1.59184 1.65369 1.20013 1.00213 0.96834 0.96597 1.22581 0.93636 1.00589 0.93318 1.21093 1.01579 0.96180 0.96604 1.21455 0.94145 0.94632 0.98342 1.19806 1.01736 0.96532 0.97237 1.18230 0.80890 0.84887 0.81059 1.43725 1.48526 1.27084 1.22325 1.90875 1.33255 1.61809 1.54843 1.21425 0.94681 0.92543 0.93508 1.42862 1.00556 1.33330 1.62028 1.19036 0.89364 1.04500 1.23972 0.89325 1.24613 0.96190 0.98019 1.00077 1.69699 1.06911 1.34963 1.46868 0.86699 0.79988 0.82307 0.80700 1.21236 1.19303 1.21964 0.93738 0.93227 0.93186 0.90922 0.92005 0.94310 0.93748 0.91436 0.91771 0.90424 0.88663 0.91964 0.89996 0.90729 0.82520 0.84597 0.85311 0.77065 0.76284 0.83353 0.80245 0.93221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 8.85 37.16 0.33 -1.64 16 2 C -0.11 -1.99 2.91 -90.62 -0.26 -2.25 16 3 C -0.14 -2.40 8.68 37.16 0.32 -2.07 16 4 C 0.19 3.57 2.11 -67.93 -0.14 3.43 16 5 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 6 C -0.14 -2.23 4.36 -26.73 -0.12 -2.35 16 7 C 0.12 1.83 5.26 -4.04 -0.02 1.80 16 8 N -0.61 -7.82 2.87 -182.69 -0.52 -8.35 16 9 C 0.06 0.48 8.65 59.85 0.52 1.00 16 10 C 0.55 8.41 7.51 -12.32 -0.09 8.32 16 11 O -0.52 -10.51 16.18 5.32 0.09 -10.42 16 12 C -0.13 -1.58 5.56 -105.02 -0.58 -2.16 16 13 C -0.08 -0.64 7.61 -39.10 -0.30 -0.94 16 14 C -0.14 -0.76 10.02 -39.70 -0.40 -1.16 16 15 C -0.07 -0.40 9.54 -39.10 -0.37 -0.77 16 16 C -0.15 -1.46 5.87 -105.02 -0.62 -2.07 16 17 C 0.56 5.86 8.05 -12.32 -0.10 5.76 16 18 N -0.85 -4.51 8.82 30.53 0.27 -4.24 16 19 O -0.53 -8.11 17.18 5.32 0.09 -8.02 16 20 C 0.00 -0.02 9.13 -38.78 -0.35 -0.38 16 21 N -0.75 -17.62 3.61 -53.42 -0.19 -17.81 16 22 C -0.24 -6.72 10.41 -15.06 -0.16 -6.87 16 23 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 24 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 25 N -0.94 -30.00 13.97 55.49 0.78 -29.22 16 26 Si 0.87 23.54 27.74 -169.99 -4.72 18.82 16 27 H -0.29 -7.70 7.11 56.52 0.40 -7.30 16 28 H -0.27 -7.13 6.51 56.52 0.37 -6.77 16 29 H -0.29 -8.02 7.11 56.52 0.40 -7.61 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.62 6.32 -51.93 -0.33 0.29 16 33 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 34 H 0.06 1.24 7.60 -51.93 -0.39 0.84 16 35 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.04 0.72 6.54 -51.93 -0.34 0.38 16 37 H 0.07 1.21 6.71 -51.93 -0.35 0.86 16 38 H 0.06 0.84 6.17 -51.93 -0.32 0.52 16 39 H 0.08 1.05 8.07 -51.93 -0.42 0.63 16 40 H 0.10 1.88 7.14 -51.93 -0.37 1.50 16 41 H 0.06 0.34 6.99 -51.93 -0.36 -0.02 16 42 H 0.08 0.51 5.26 -51.93 -0.27 0.23 16 43 H 0.07 0.49 8.10 -51.93 -0.42 0.07 16 44 H 0.16 0.88 4.02 -52.48 -0.21 0.67 16 45 H 0.14 0.34 8.06 -52.48 -0.42 -0.08 16 46 H 0.13 0.28 6.39 -52.48 -0.34 -0.06 16 47 H 0.40 0.76 6.85 -40.82 -0.28 0.49 16 48 H 0.41 1.72 8.93 -40.82 -0.36 1.35 16 49 H 0.15 2.25 7.37 -52.48 -0.39 1.86 16 50 H 0.36 9.00 5.65 -40.82 -0.23 8.77 16 51 H 0.26 7.94 8.31 -40.82 -0.34 7.61 16 LS Contribution 404.31 15.07 6.09 6.09 Total: -1.00 -38.71 404.31 -8.07 -46.79 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -7.51 Total: 8.62 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: -2.44 Total: -2.26 kcal Atomic # 7 Polarization: -59.95 SS G_CDS: 0.33 Total: -59.62 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: 0.18 Total: -18.44 kcal Atomic # 14 Polarization: 23.54 SS G_CDS: -4.72 Total: 18.82 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -38.71 -8.07 -46.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725212442.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.110 kcal (2) G-P(sol) polarization free energy of solvation -38.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds