Wall clock time and date at job start Wed Apr 1 2020 05:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47165 * 2 1 4 4 C 1.52998 * 109.47365 * 119.99972 * 2 1 3 5 5 H 1.09000 * 109.46992 * 59.99928 * 4 2 1 6 6 C 1.53006 * 109.47287 * 299.99937 * 4 2 1 7 7 C 1.53001 * 109.47149 * 175.00138 * 6 4 2 8 8 N 1.46501 * 109.46781 * 180.02562 * 7 6 4 9 9 C 1.46501 * 120.00028 * 89.99823 * 8 7 6 10 10 C 1.34778 * 119.99621 * 269.99473 * 8 7 6 11 11 O 1.21549 * 120.00254 * 6.96224 * 10 8 7 12 12 C 1.47865 * 119.99693 * 186.96024 * 10 8 7 13 13 C 1.39700 * 120.07339 * 20.38051 * 12 10 8 14 14 C 1.38052 * 120.14343 * 179.73743 * 13 12 10 15 15 C 1.38094 * 120.29639 * 0.51420 * 14 13 12 16 16 C 1.39661 * 120.14508 * 359.76578 * 15 14 13 17 17 C 1.47863 * 120.07489 * 179.97438 * 16 15 14 18 18 N 1.34776 * 119.99984 * 0.02562 * 17 16 15 19 19 O 1.21556 * 119.99812 * 180.02562 * 17 16 15 20 20 C 1.39289 * 120.07142 * 200.65275 * 12 10 8 21 21 N 1.46502 * 109.47319 * 180.02562 * 4 2 1 22 22 C 1.36940 * 119.99817 * 274.99885 * 21 4 2 23 23 H 1.07991 * 120.00328 * 0.02562 * 22 21 4 24 24 C 1.38812 * 119.99988 * 179.97438 * 22 21 4 25 25 N 1.31616 * 120.00239 * 179.72459 * 24 22 21 26 26 Si 1.86801 * 119.99709 * 0.02562 * 24 22 21 27 27 H 1.48500 * 109.47278 * 269.72110 * 26 24 22 28 28 H 1.48499 * 109.47375 * 29.72493 * 26 24 22 29 29 H 1.48507 * 109.46978 * 149.72389 * 26 24 22 30 30 H 1.08999 * 109.47525 * 59.99924 * 1 2 3 31 31 H 1.09003 * 109.46920 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47194 * 299.99689 * 1 2 3 33 33 H 1.09004 * 109.47194 * 240.00311 * 2 1 3 34 34 H 1.09000 * 109.47421 * 180.02562 * 3 2 1 35 35 H 1.08998 * 109.47054 * 299.99875 * 3 2 1 36 36 H 1.08993 * 109.47279 * 59.99994 * 3 2 1 37 37 H 1.09003 * 109.46727 * 294.99742 * 6 4 2 38 38 H 1.08995 * 109.46556 * 54.99539 * 6 4 2 39 39 H 1.08998 * 109.46534 * 300.00021 * 7 6 4 40 40 H 1.08998 * 109.47324 * 59.99469 * 7 6 4 41 41 H 1.08996 * 109.46802 * 86.40984 * 9 8 7 42 42 H 1.09000 * 109.46626 * 206.40774 * 9 8 7 43 43 H 1.08994 * 109.47345 * 326.40886 * 9 8 7 44 44 H 1.08003 * 119.93032 * 359.97438 * 13 12 10 45 45 H 1.08009 * 119.85366 * 180.25801 * 14 13 12 46 46 H 1.08005 * 119.93152 * 179.74347 * 15 14 13 47 47 H 0.96996 * 120.00309 * 0.02562 * 18 17 16 48 48 H 0.97003 * 120.00036 * 179.97438 * 18 17 16 49 49 H 1.08003 * 120.14739 * 359.97438 * 20 12 10 50 50 H 0.97001 * 120.00215 * 94.99466 * 21 4 2 51 51 H 0.96997 * 120.00006 * 180.27636 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6767 -1.7489 1.2492 6 6 1.5301 0.0000 2.4985 7 6 1.9349 -0.7901 3.7446 8 7 1.4461 -0.0998 4.9407 9 6 0.1178 -0.4110 5.4747 10 6 2.2184 0.8215 5.5499 11 8 3.2641 1.1720 5.0388 12 6 1.7937 1.4060 6.8400 13 6 0.8579 0.7407 7.6357 14 6 0.4643 1.2824 8.8429 15 6 0.9840 2.4894 9.2674 16 6 1.9159 3.1679 8.4789 17 6 2.4709 4.4604 8.9346 18 7 2.0780 4.9848 10.1123 19 8 3.2816 5.0499 8.2470 20 6 2.3215 2.6241 7.2619 21 7 3.5050 -0.7207 1.2495 22 6 4.1902 -1.6918 0.5693 23 1 3.6507 -2.4578 0.0323 24 6 5.5783 -1.6910 0.5691 25 7 6.2369 -2.6275 -0.0801 26 14 6.5116 -0.3656 1.4974 27 1 6.7642 0.7863 0.5948 28 1 5.7061 0.0845 2.6609 29 1 7.8067 -0.9140 1.9744 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4426 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8899 37 1 1.9648 0.9986 2.5444 38 1 0.4438 0.0783 2.4548 39 1 1.5003 -1.7887 3.6986 40 1 3.0212 -0.8684 3.7882 41 1 0.1884 -1.2638 6.1499 42 1 -0.2665 0.4520 6.0183 43 1 -0.5565 -0.6528 4.6532 44 1 0.4442 -0.2015 7.3075 45 1 -0.2564 0.7619 9.4564 46 1 0.6688 2.9098 10.2110 47 1 1.4314 4.5142 10.6612 48 1 2.4423 5.8325 10.4115 49 1 3.0423 3.1444 6.6486 50 1 3.9897 -0.0324 1.7315 51 1 7.2068 -2.6293 -0.0769 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725212442.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:41 Heat of formation + Delta-G solvation = -46.891494 kcal Electronic energy + Delta-G solvation = -30943.511348 eV Core-core repulsion = 26842.631200 eV Total energy + Delta-G solvation = -4100.880148 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.76511 -40.74472 -39.28302 -38.72324 -36.86722 -35.12879 -35.02125 -33.31440 -32.60337 -32.15649 -31.09406 -28.21115 -27.92894 -27.10050 -25.17434 -25.05995 -24.00357 -23.12978 -22.01030 -20.68156 -20.09272 -19.58763 -19.18573 -18.02513 -17.85646 -17.19731 -17.08664 -16.82192 -16.66718 -16.02104 -15.86021 -15.74416 -15.48911 -15.28120 -14.99387 -14.94039 -14.77109 -14.54794 -14.41603 -14.18490 -13.98653 -13.70601 -13.47200 -13.10766 -13.02132 -12.86815 -12.84556 -12.65116 -12.57365 -12.20470 -12.09626 -12.07010 -11.81874 -11.71608 -11.50743 -11.35714 -11.21861 -10.95360 -10.89968 -10.82319 -10.15347 -10.03928 -9.69182 -9.22762 -8.04087 -5.31557 -0.39820 -0.04774 1.28957 1.33342 1.42778 1.51123 1.86656 1.98825 2.43653 2.44254 2.79043 3.28968 3.39008 3.62917 3.72847 3.81387 3.97031 3.98468 4.04345 4.08833 4.17376 4.26721 4.35019 4.39135 4.45258 4.53645 4.59596 4.62653 4.70325 4.81367 4.85796 4.88405 4.90898 4.93005 5.09485 5.11176 5.15468 5.19905 5.22741 5.26463 5.31610 5.38059 5.53186 5.58218 5.63364 5.71859 5.81049 5.82268 6.22649 6.33145 6.36042 7.07296 7.09319 7.22075 7.88927 8.05372 9.18045 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011410 B = 0.002826 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.366359 B = 9904.961544 C =10896.976745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.112 4.112 3 C -0.135 4.135 4 C 0.183 3.817 5 H 0.056 0.944 6 C -0.125 4.125 7 C 0.121 3.879 8 N -0.603 5.603 9 C 0.051 3.949 10 C 0.538 3.462 11 O -0.589 6.589 12 C -0.154 4.154 13 C -0.071 4.071 14 C -0.118 4.118 15 C -0.044 4.044 16 C -0.162 4.162 17 C 0.557 3.443 18 N -0.822 5.822 19 O -0.597 6.597 20 C -0.035 4.035 21 N -0.749 5.749 22 C -0.206 4.206 23 H 0.069 0.931 24 C -0.054 4.054 25 N -0.981 5.981 26 Si 0.930 3.070 27 H -0.285 1.285 28 H -0.272 1.272 29 H -0.296 1.296 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.042 0.958 34 H 0.024 0.976 35 H 0.057 0.943 36 H 0.055 0.945 37 H 0.042 0.958 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.043 0.957 41 H 0.093 0.907 42 H 0.100 0.900 43 H 0.093 0.907 44 H 0.185 0.815 45 H 0.188 0.812 46 H 0.178 0.822 47 H 0.421 0.579 48 H 0.414 0.586 49 H 0.098 0.902 50 H 0.358 0.642 51 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.188 9.008 26.544 38.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.133 4.133 3 C -0.192 4.192 4 C 0.075 3.925 5 H 0.075 0.925 6 C -0.164 4.164 7 C -0.002 4.002 8 N -0.334 5.334 9 C -0.089 4.089 10 C 0.328 3.672 11 O -0.471 6.471 12 C -0.157 4.157 13 C -0.089 4.089 14 C -0.136 4.136 15 C -0.063 4.063 16 C -0.166 4.166 17 C 0.344 3.656 18 N -0.387 5.387 19 O -0.479 6.479 20 C -0.055 4.055 21 N -0.391 5.391 22 C -0.337 4.337 23 H 0.087 0.913 24 C -0.246 4.246 25 N -0.633 5.633 26 Si 0.761 3.239 27 H -0.212 1.212 28 H -0.198 1.198 29 H -0.223 1.223 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.060 0.940 34 H 0.043 0.957 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.061 0.939 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.061 0.939 41 H 0.111 0.889 42 H 0.119 0.881 43 H 0.112 0.888 44 H 0.202 0.798 45 H 0.206 0.794 46 H 0.196 0.804 47 H 0.254 0.746 48 H 0.246 0.754 49 H 0.116 0.884 50 H 0.190 0.810 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -25.165 9.216 25.639 37.089 hybrid contribution 2.036 1.047 -0.051 2.290 sum -23.129 10.263 25.589 35.987 Atomic orbital electron populations 1.21798 0.92961 1.02174 1.02250 1.21635 0.96751 0.96022 0.98876 1.21696 0.99747 0.96592 1.01168 1.20450 0.81753 0.97483 0.92807 0.92549 1.22153 1.02252 0.98622 0.93392 1.21436 0.99379 0.95962 0.83379 1.47861 1.18399 1.39148 1.27996 1.22862 0.81514 1.02855 1.01697 1.18996 0.83523 0.79389 0.85253 1.90834 1.26923 1.61796 1.67506 1.19760 1.02807 0.97197 0.95967 1.22908 0.91697 1.00938 0.93364 1.21692 1.00915 0.95430 0.95526 1.21998 0.91268 0.94106 0.98896 1.19819 1.03201 0.96703 0.96835 1.18516 0.80253 0.85074 0.81773 1.43478 1.47670 1.27021 1.20527 1.90846 1.36367 1.63574 1.57085 1.21185 0.95522 0.93759 0.95044 1.42969 1.02879 1.32032 1.61217 1.19065 0.89242 1.03799 1.21620 0.91285 1.25139 0.97297 1.00060 1.02057 1.69814 1.06872 1.37087 1.49492 0.85778 0.78569 0.80193 0.79397 1.21229 1.19796 1.22326 0.92457 0.92036 0.91235 0.93970 0.95683 0.92420 0.92574 0.93932 0.87742 0.87831 0.93858 0.88863 0.88143 0.88817 0.79832 0.79442 0.80434 0.74596 0.75393 0.88374 0.80992 0.93601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.23 8.85 71.98 0.64 -2.59 16 2 C -0.11 -3.82 2.91 -10.80 -0.03 -3.85 16 3 C -0.13 -4.69 8.68 71.98 0.63 -4.06 16 4 C 0.18 6.84 2.11 44.99 0.10 6.94 16 5 H 0.06 2.10 8.08 -2.39 -0.02 2.08 16 6 C -0.13 -3.86 4.36 30.60 0.13 -3.72 16 7 C 0.12 3.71 5.26 86.38 0.45 4.16 16 8 N -0.60 -14.82 2.87 -850.18 -2.44 -17.27 16 9 C 0.05 0.54 8.65 127.77 1.10 1.64 16 10 C 0.54 17.27 7.51 86.79 0.65 17.92 16 11 O -0.59 -26.66 16.18 -3.87 -0.06 -26.72 16 12 C -0.15 -3.64 5.56 -20.12 -0.11 -3.75 16 13 C -0.07 -0.80 7.61 22.58 0.17 -0.63 16 14 C -0.12 -0.56 10.02 22.19 0.22 -0.34 16 15 C -0.04 -0.31 9.54 22.58 0.22 -0.09 16 16 C -0.16 -3.01 5.87 -20.12 -0.12 -3.13 16 17 C 0.56 11.61 8.05 86.79 0.70 12.31 16 18 N -0.82 -6.78 8.82 -175.59 -1.55 -8.33 16 19 O -0.60 -19.84 17.18 -3.89 -0.07 -19.91 16 20 C -0.03 -0.95 9.13 22.79 0.21 -0.74 16 21 N -0.75 -36.82 3.61 -322.93 -1.17 -37.98 16 22 C -0.21 -12.03 10.41 84.03 0.87 -11.16 16 23 H 0.07 4.28 8.06 -2.92 -0.02 4.26 16 24 C -0.05 -3.37 5.50 84.86 0.47 -2.91 16 25 N -0.98 -65.36 13.97 21.65 0.30 -65.06 16 26 Si 0.93 51.77 27.74 68.60 1.90 53.67 16 27 H -0.29 -15.70 7.11 99.48 0.71 -14.99 16 28 H -0.27 -15.20 6.51 99.48 0.65 -14.55 16 29 H -0.30 -16.52 7.11 99.48 0.71 -15.81 16 30 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.07 1.42 6.32 -2.38 -0.02 1.40 16 33 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 34 H 0.02 1.02 7.60 -2.39 -0.02 1.00 16 35 H 0.06 1.75 8.14 -2.39 -0.02 1.74 16 36 H 0.06 1.80 6.54 -2.39 -0.02 1.79 16 37 H 0.04 1.55 6.71 -2.39 -0.02 1.53 16 38 H 0.10 2.37 6.17 -2.39 -0.01 2.36 16 39 H 0.10 2.59 8.07 -2.39 -0.02 2.57 16 40 H 0.04 1.80 7.14 -2.39 -0.02 1.78 16 41 H 0.09 0.48 6.99 -2.39 -0.02 0.46 16 42 H 0.10 0.74 5.26 -2.39 -0.01 0.73 16 43 H 0.09 0.71 8.10 -2.39 -0.02 0.69 16 44 H 0.19 0.99 4.02 -2.91 -0.01 0.98 16 45 H 0.19 -0.82 8.06 -2.91 -0.02 -0.85 16 46 H 0.18 -0.55 6.39 -2.91 -0.02 -0.57 16 47 H 0.42 -0.28 6.85 -92.71 -0.64 -0.92 16 48 H 0.41 2.72 8.93 -92.71 -0.83 1.89 16 49 H 0.10 3.58 7.37 -2.91 -0.02 3.56 16 50 H 0.36 18.65 5.65 -92.71 -0.52 18.12 16 51 H 0.25 16.38 8.31 -92.71 -0.77 15.61 16 Total: -1.00 -98.64 404.31 2.16 -96.48 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: -1.06 Total: 19.12 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: 6.30 Total: 6.00 kcal Atomic # 7 Polarization: -123.78 SS G_CDS: -4.86 Total: -128.64 kcal Atomic # 8 Polarization: -46.50 SS G_CDS: -0.13 Total: -46.63 kcal Atomic # 14 Polarization: 51.77 SS G_CDS: 1.90 Total: 53.67 kcal Total: -98.64 2.16 -96.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725212442.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.592 kcal (2) G-P(sol) polarization free energy of solvation -98.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds