Wall clock time and date at job start Wed Apr 1 2020 04:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47067 * 2 1 4 4 C 1.52998 * 109.46917 * 240.00081 * 2 1 3 5 5 C 1.52995 * 109.47008 * 119.99846 * 2 1 3 6 6 H 1.09003 * 109.47086 * 179.97438 * 5 2 1 7 7 C 1.52998 * 109.47474 * 299.99894 * 5 2 1 8 8 N 1.46499 * 109.47039 * 174.99863 * 7 5 2 9 9 C 1.36939 * 119.99869 * 180.02562 * 8 7 5 10 10 H 1.08006 * 119.99821 * 359.97438 * 9 8 7 11 11 C 1.38811 * 120.00279 * 180.02562 * 9 8 7 12 12 N 1.31618 * 120.00182 * 179.97438 * 11 9 8 13 13 Si 1.86802 * 119.99680 * 359.97438 * 11 9 8 14 14 H 1.48505 * 109.47177 * 90.00272 * 13 11 9 15 15 H 1.48500 * 109.47161 * 210.00222 * 13 11 9 16 16 H 1.48496 * 109.47199 * 330.00367 * 13 11 9 17 17 N 1.46506 * 109.47189 * 60.00123 * 5 2 1 18 18 C 1.34776 * 119.99750 * 84.99844 * 17 5 2 19 19 O 1.21591 * 120.00555 * 359.97438 * 18 17 5 20 20 C 1.47527 * 119.99800 * 180.02562 * 18 17 5 21 21 C 1.39911 * 120.69285 * 359.97438 * 20 18 17 22 22 C 1.38447 * 118.54892 * 180.02562 * 21 20 18 23 23 C 1.38398 * 119.62019 * 0.02562 * 22 21 20 24 24 N 1.32358 * 120.60421 * 0.02562 * 23 22 21 25 25 C 1.32034 * 122.19113 * 359.95888 * 24 23 22 26 26 O 1.35431 * 119.78644 * 180.02562 * 25 24 23 27 27 C 1.51547 * 109.52930 * 180.02562 * 23 22 21 28 28 C 1.54320 * 105.22099 * 342.69561 * 27 23 22 29 29 C 1.51278 * 130.46639 * 179.97438 * 22 21 20 30 30 H 1.09004 * 109.47365 * 300.00088 * 1 2 3 31 31 H 1.08998 * 109.47523 * 59.99950 * 1 2 3 32 32 H 1.09000 * 109.47228 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.47370 * 180.02562 * 3 2 1 34 34 H 1.09007 * 109.46818 * 300.00430 * 3 2 1 35 35 H 1.09004 * 109.47100 * 59.99749 * 3 2 1 36 36 H 1.09000 * 109.46925 * 299.99884 * 4 2 1 37 37 H 1.08999 * 109.47516 * 59.99932 * 4 2 1 38 38 H 1.08995 * 109.46944 * 180.02562 * 4 2 1 39 39 H 1.08991 * 109.47363 * 295.00175 * 7 5 2 40 40 H 1.08998 * 109.46734 * 55.00480 * 7 5 2 41 41 H 0.96996 * 120.00106 * 0.02562 * 8 7 5 42 42 H 0.97002 * 119.99953 * 179.97438 * 12 11 9 43 43 H 0.96999 * 119.99895 * 265.00195 * 17 5 2 44 44 H 1.08000 * 120.73112 * 359.97438 * 21 20 18 45 45 H 0.96704 * 113.99932 * 90.00441 * 26 25 24 46 46 H 1.08998 * 110.28182 * 223.76874 * 27 23 22 47 47 H 1.08999 * 110.39099 * 101.67522 * 27 23 22 48 48 H 1.09003 * 110.81511 * 268.23542 * 28 27 23 49 49 H 1.08991 * 110.98519 * 144.76858 * 28 27 23 50 50 H 1.09002 * 110.30835 * 316.09953 * 29 22 21 51 51 H 1.08998 * 110.30909 * 78.17096 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0400 -0.7212 1.2492 6 1 3.1300 -0.7216 1.2490 7 6 1.5300 0.0000 2.4985 8 7 1.9176 -0.7566 3.6916 9 6 1.5681 -0.3010 4.9348 10 1 1.0071 0.6164 5.0356 11 6 1.9357 -1.0176 6.0653 12 7 1.6002 -0.5794 7.2602 13 14 2.9066 -2.6039 5.8908 14 1 4.3600 -2.2999 5.9148 15 1 2.5728 -3.5149 7.0151 16 1 2.5590 -3.2580 4.6038 17 7 1.5516 -2.1025 1.2493 18 6 2.2285 -3.0565 0.5798 19 8 3.2441 -2.7708 -0.0246 20 6 1.7364 -4.4473 0.5793 21 6 0.5692 -4.7921 1.2694 22 6 0.1481 -6.1106 1.2397 23 6 0.8838 -7.0480 0.5359 24 7 1.9853 -6.6952 -0.1076 25 6 2.4301 -5.4520 -0.1114 26 8 3.5630 -5.1449 -0.7870 27 6 0.2213 -8.4058 0.6555 28 6 -0.7389 -8.2836 1.8573 29 6 -1.0529 -6.7723 1.8788 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 3.1299 1.4425 -0.0005 34 1 1.6765 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6766 -1.7489 -1.2492 37 1 1.6766 -0.2074 -2.1392 38 1 3.1299 -0.7216 -1.2490 39 1 1.9646 0.9985 2.5444 40 1 0.4437 0.0782 2.4548 41 1 2.4217 -1.5803 3.6010 42 1 1.8568 -1.0804 8.0502 43 1 0.7412 -2.3303 1.7311 44 1 0.0094 -4.0462 1.8141 45 1 3.4146 -4.8870 -1.7071 46 1 0.9691 -9.1756 0.8459 47 1 -0.3364 -8.6374 -0.2519 48 1 -0.2458 -8.5902 2.7798 49 1 -1.6460 -8.8651 1.6929 50 1 -1.1740 -6.4261 2.9052 51 1 -1.9527 -6.5623 1.3007 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725753955.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:13 Heat of formation + Delta-G solvation = -32.842811 kcal Electronic energy + Delta-G solvation = -32174.215680 eV Core-core repulsion = 28073.944729 eV Total energy + Delta-G solvation = -4100.270951 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.29974 -39.96150 -38.22414 -37.19828 -35.42451 -34.63935 -33.71613 -32.64823 -31.29770 -29.31711 -28.22437 -27.93986 -27.21440 -26.73901 -24.15624 -23.78289 -22.77535 -21.45169 -21.15487 -20.41921 -18.83233 -18.62371 -17.93614 -17.25936 -16.96126 -16.14099 -15.83661 -15.67252 -15.54819 -14.70395 -14.38449 -14.32577 -14.14738 -13.80962 -13.58977 -13.31462 -13.26417 -13.10866 -13.01715 -12.83543 -12.77458 -12.32510 -12.24551 -12.04010 -11.90882 -11.71267 -11.58472 -11.56581 -11.45968 -11.29458 -11.20314 -10.89690 -10.79793 -10.61670 -10.36210 -10.04799 -10.01571 -9.97972 -9.65453 -9.39909 -8.96334 -8.85246 -8.68337 -7.29764 -5.82781 -3.18746 0.41348 0.90194 2.81201 3.08970 3.32430 3.33072 3.38566 3.43404 3.59202 4.05577 4.10555 4.50460 4.52723 4.54165 4.65032 4.77052 4.83224 4.85683 4.97150 5.06629 5.14400 5.31380 5.33554 5.39811 5.42186 5.46029 5.55265 5.56446 5.60228 5.65750 5.67832 5.75112 5.80254 5.80996 5.83376 5.89531 5.94985 6.03755 6.07079 6.18678 6.21394 6.31728 6.34766 6.39402 6.51179 6.61824 6.80663 7.38790 7.62192 7.70274 7.92606 8.33509 8.36367 9.14760 9.87281 10.06518 11.35305 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007781 B = 0.004587 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3597.869859 B = 6102.434981 C = 8292.617037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.075 4.075 3 C -0.142 4.142 4 C -0.129 4.129 5 C 0.146 3.854 6 H 0.089 0.911 7 C 0.146 3.854 8 N -0.755 5.755 9 C -0.246 4.246 10 H 0.091 0.909 11 C 0.009 3.991 12 N -0.931 5.931 13 Si 0.880 3.120 14 H -0.284 1.284 15 H -0.290 1.290 16 H -0.279 1.279 17 N -0.708 5.708 18 C 0.563 3.437 19 O -0.518 6.518 20 C -0.200 4.200 21 C -0.017 4.017 22 C -0.168 4.168 23 C 0.163 3.837 24 N -0.506 5.506 25 C 0.372 3.628 26 O -0.456 6.456 27 C -0.073 4.073 28 C -0.119 4.119 29 C -0.078 4.078 30 H 0.064 0.936 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.053 0.947 35 H 0.064 0.936 36 H 0.049 0.951 37 H 0.042 0.958 38 H 0.062 0.938 39 H 0.046 0.954 40 H 0.037 0.963 41 H 0.362 0.638 42 H 0.260 0.740 43 H 0.401 0.599 44 H 0.143 0.857 45 H 0.402 0.598 46 H 0.088 0.912 47 H 0.094 0.906 48 H 0.078 0.922 49 H 0.085 0.915 50 H 0.084 0.916 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.433 -10.743 -18.446 22.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.077 4.077 3 C -0.199 4.199 4 C -0.187 4.187 5 C 0.041 3.959 6 H 0.107 0.893 7 C 0.018 3.982 8 N -0.401 5.401 9 C -0.376 4.376 10 H 0.109 0.891 11 C -0.187 4.187 12 N -0.579 5.579 13 Si 0.711 3.289 14 H -0.210 1.210 15 H -0.217 1.217 16 H -0.205 1.205 17 N -0.359 5.359 18 C 0.349 3.651 19 O -0.395 6.395 20 C -0.207 4.207 21 C -0.043 4.043 22 C -0.170 4.170 23 C 0.025 3.975 24 N -0.225 5.225 25 C 0.192 3.808 26 O -0.263 6.263 27 C -0.110 4.110 28 C -0.157 4.157 29 C -0.116 4.116 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.081 0.919 39 H 0.063 0.937 40 H 0.055 0.945 41 H 0.195 0.805 42 H 0.070 0.930 43 H 0.236 0.764 44 H 0.161 0.839 45 H 0.261 0.739 46 H 0.107 0.893 47 H 0.112 0.888 48 H 0.097 0.903 49 H 0.104 0.896 50 H 0.103 0.897 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.981 -11.062 -18.646 22.491 hybrid contribution -0.168 -0.479 0.349 0.616 sum -6.149 -11.541 -18.297 22.490 Atomic orbital electron populations 1.21922 0.94607 1.01553 1.01869 1.20881 0.95901 0.95714 0.95171 1.21896 1.01253 0.94798 1.01991 1.21884 1.01707 0.99448 0.95616 1.21387 0.99994 0.79713 0.94800 0.89274 1.21091 0.97967 0.94790 0.84323 1.42725 1.67882 1.27240 1.02299 1.19031 1.29764 1.07131 0.81639 0.89092 1.24631 1.00505 0.98439 0.95115 1.69694 1.51093 1.40196 0.96924 0.86631 0.80815 0.84712 0.76780 1.21027 1.21681 1.20526 1.45905 1.29068 1.08633 1.52300 1.17653 0.83903 0.83836 0.79708 1.90799 1.23695 1.81903 1.43143 1.21093 0.97915 0.95601 1.06081 1.21254 0.93352 0.95823 0.93832 1.21390 0.99983 0.93942 1.01647 1.21841 0.88437 0.96953 0.90300 1.66344 1.14098 1.19762 1.22297 1.18850 0.84742 0.85831 0.91404 1.84761 1.25120 1.87627 1.28795 1.21095 0.97993 0.92129 0.99833 1.22333 0.99476 0.95759 0.98121 1.20983 0.94819 0.94358 1.01415 0.91726 0.93043 0.93038 0.92486 0.92769 0.91728 0.93171 0.93874 0.91864 0.93681 0.94536 0.80486 0.93007 0.76384 0.83906 0.73889 0.89324 0.88803 0.90350 0.89601 0.89728 0.89552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 7.97 37.16 0.30 -1.33 16 2 C -0.08 -0.95 0.62 -154.51 -0.10 -1.05 16 3 C -0.14 -1.67 8.12 37.16 0.30 -1.37 16 4 C -0.13 -1.65 7.00 37.16 0.26 -1.39 16 5 C 0.15 2.25 1.69 -67.93 -0.11 2.14 16 6 H 0.09 1.58 7.58 -51.93 -0.39 1.18 16 7 C 0.15 2.62 5.10 -4.04 -0.02 2.60 16 8 N -0.76 -17.29 5.24 -59.91 -0.31 -17.60 16 9 C -0.25 -6.76 10.47 -15.06 -0.16 -6.91 16 10 H 0.09 2.66 8.06 -52.48 -0.42 2.24 16 11 C 0.01 0.27 5.50 -17.43 -0.10 0.17 16 12 N -0.93 -28.84 13.97 55.49 0.78 -28.06 16 13 Si 0.88 22.42 27.74 -169.99 -4.71 17.70 16 14 H -0.28 -7.36 7.11 56.52 0.40 -6.96 16 15 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 16 H -0.28 -6.76 6.52 56.52 0.37 -6.39 16 17 N -0.71 -10.56 3.59 -54.85 -0.20 -10.76 16 18 C 0.56 8.90 6.13 -12.47 -0.08 8.82 16 19 O -0.52 -9.17 12.32 -16.44 -0.20 -9.37 16 20 C -0.20 -2.91 5.90 -104.72 -0.62 -3.53 16 21 C -0.02 -0.21 9.64 -38.88 -0.37 -0.58 16 22 C -0.17 -1.87 6.14 -104.20 -0.64 -2.51 16 23 C 0.16 1.92 7.32 -81.89 -0.60 1.33 16 24 N -0.51 -7.20 10.36 -8.88 -0.09 -7.29 16 25 C 0.37 5.53 7.77 -16.70 -0.13 5.41 16 26 O -0.46 -6.61 11.67 -39.71 -0.46 -7.07 16 27 C -0.07 -0.57 6.77 -26.77 -0.18 -0.75 16 28 C -0.12 -0.76 7.08 -25.32 -0.18 -0.94 16 29 C -0.08 -0.61 6.77 -26.88 -0.18 -0.80 16 30 H 0.06 0.76 6.32 -51.93 -0.33 0.44 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.58 7.60 -51.93 -0.39 0.18 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.05 0.56 8.14 -51.92 -0.42 0.14 16 35 H 0.06 0.78 6.54 -51.93 -0.34 0.44 16 36 H 0.05 0.68 5.77 -51.93 -0.30 0.38 16 37 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.90 7.52 -51.93 -0.39 0.51 16 39 H 0.05 0.83 6.71 -51.93 -0.35 0.48 16 40 H 0.04 0.64 6.17 -51.93 -0.32 0.32 16 41 H 0.36 8.44 5.20 -40.82 -0.21 8.23 16 42 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 43 H 0.40 5.60 6.71 -40.82 -0.27 5.33 16 44 H 0.14 1.55 6.52 -52.49 -0.34 1.21 16 45 H 0.40 3.98 9.06 45.56 0.41 4.39 16 46 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 47 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 49 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 50 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 51 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 395.09 15.07 5.95 5.95 Total: -1.00 -34.64 395.09 -8.91 -43.55 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: -7.05 Total: 13.66 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: -2.61 Total: -0.71 kcal Atomic # 7 Polarization: -63.89 SS G_CDS: 0.17 Total: -63.71 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: -0.67 Total: -16.44 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.71 Total: 17.70 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.64 -8.91 -43.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725753955.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.705 kcal (2) G-P(sol) polarization free energy of solvation -34.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds