Wall clock time and date at job start Wed Apr 1 2020 04:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47067 * 2 1 4 4 C 1.52998 * 109.46917 * 240.00081 * 2 1 3 5 5 C 1.52995 * 109.47008 * 119.99846 * 2 1 3 6 6 H 1.09003 * 109.47086 * 179.97438 * 5 2 1 7 7 C 1.52998 * 109.47474 * 299.99894 * 5 2 1 8 8 N 1.46499 * 109.47039 * 174.99863 * 7 5 2 9 9 C 1.36939 * 119.99869 * 180.02562 * 8 7 5 10 10 H 1.08006 * 119.99821 * 359.97438 * 9 8 7 11 11 C 1.38811 * 120.00279 * 180.02562 * 9 8 7 12 12 N 1.31618 * 120.00182 * 179.97438 * 11 9 8 13 13 Si 1.86802 * 119.99680 * 359.97438 * 11 9 8 14 14 H 1.48505 * 109.47177 * 90.00272 * 13 11 9 15 15 H 1.48500 * 109.47161 * 210.00222 * 13 11 9 16 16 H 1.48496 * 109.47199 * 330.00367 * 13 11 9 17 17 N 1.46506 * 109.47189 * 60.00123 * 5 2 1 18 18 C 1.34776 * 119.99750 * 84.99844 * 17 5 2 19 19 O 1.21591 * 120.00555 * 359.97438 * 18 17 5 20 20 C 1.47527 * 119.99800 * 180.02562 * 18 17 5 21 21 C 1.39911 * 120.69285 * 359.97438 * 20 18 17 22 22 C 1.38447 * 118.54892 * 180.02562 * 21 20 18 23 23 C 1.38398 * 119.62019 * 0.02562 * 22 21 20 24 24 N 1.32358 * 120.60421 * 0.02562 * 23 22 21 25 25 C 1.32034 * 122.19113 * 359.95888 * 24 23 22 26 26 O 1.35431 * 119.78644 * 180.02562 * 25 24 23 27 27 C 1.51547 * 109.52930 * 180.02562 * 23 22 21 28 28 C 1.54320 * 105.22099 * 342.69561 * 27 23 22 29 29 C 1.51278 * 130.46639 * 179.97438 * 22 21 20 30 30 H 1.09004 * 109.47365 * 300.00088 * 1 2 3 31 31 H 1.08998 * 109.47523 * 59.99950 * 1 2 3 32 32 H 1.09000 * 109.47228 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.47370 * 180.02562 * 3 2 1 34 34 H 1.09007 * 109.46818 * 300.00430 * 3 2 1 35 35 H 1.09004 * 109.47100 * 59.99749 * 3 2 1 36 36 H 1.09000 * 109.46925 * 299.99884 * 4 2 1 37 37 H 1.08999 * 109.47516 * 59.99932 * 4 2 1 38 38 H 1.08995 * 109.46944 * 180.02562 * 4 2 1 39 39 H 1.08991 * 109.47363 * 295.00175 * 7 5 2 40 40 H 1.08998 * 109.46734 * 55.00480 * 7 5 2 41 41 H 0.96996 * 120.00106 * 0.02562 * 8 7 5 42 42 H 0.97002 * 119.99953 * 179.97438 * 12 11 9 43 43 H 0.96999 * 119.99895 * 265.00195 * 17 5 2 44 44 H 1.08000 * 120.73112 * 359.97438 * 21 20 18 45 45 H 0.96704 * 113.99932 * 90.00441 * 26 25 24 46 46 H 1.08998 * 110.28182 * 223.76874 * 27 23 22 47 47 H 1.08999 * 110.39099 * 101.67522 * 27 23 22 48 48 H 1.09003 * 110.81511 * 268.23542 * 28 27 23 49 49 H 1.08991 * 110.98519 * 144.76858 * 28 27 23 50 50 H 1.09002 * 110.30835 * 316.09953 * 29 22 21 51 51 H 1.08998 * 110.30909 * 78.17096 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0400 -0.7212 1.2492 6 1 3.1300 -0.7216 1.2490 7 6 1.5300 0.0000 2.4985 8 7 1.9176 -0.7566 3.6916 9 6 1.5681 -0.3010 4.9348 10 1 1.0071 0.6164 5.0356 11 6 1.9357 -1.0176 6.0653 12 7 1.6002 -0.5794 7.2602 13 14 2.9066 -2.6039 5.8908 14 1 4.3600 -2.2999 5.9148 15 1 2.5728 -3.5149 7.0151 16 1 2.5590 -3.2580 4.6038 17 7 1.5516 -2.1025 1.2493 18 6 2.2285 -3.0565 0.5798 19 8 3.2441 -2.7708 -0.0246 20 6 1.7364 -4.4473 0.5793 21 6 0.5692 -4.7921 1.2694 22 6 0.1481 -6.1106 1.2397 23 6 0.8838 -7.0480 0.5359 24 7 1.9853 -6.6952 -0.1076 25 6 2.4301 -5.4520 -0.1114 26 8 3.5630 -5.1449 -0.7870 27 6 0.2213 -8.4058 0.6555 28 6 -0.7389 -8.2836 1.8573 29 6 -1.0529 -6.7723 1.8788 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 3.1299 1.4425 -0.0005 34 1 1.6765 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6766 -1.7489 -1.2492 37 1 1.6766 -0.2074 -2.1392 38 1 3.1299 -0.7216 -1.2490 39 1 1.9646 0.9985 2.5444 40 1 0.4437 0.0782 2.4548 41 1 2.4217 -1.5803 3.6010 42 1 1.8568 -1.0804 8.0502 43 1 0.7412 -2.3303 1.7311 44 1 0.0094 -4.0462 1.8141 45 1 3.4146 -4.8870 -1.7071 46 1 0.9691 -9.1756 0.8459 47 1 -0.3364 -8.6374 -0.2519 48 1 -0.2458 -8.5902 2.7798 49 1 -1.6460 -8.8651 1.6929 50 1 -1.1740 -6.4261 2.9052 51 1 -1.9527 -6.5623 1.3007 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725753955.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:12 Heat of formation + Delta-G solvation = -57.809884 kcal Electronic energy + Delta-G solvation = -32175.298333 eV Core-core repulsion = 28073.944729 eV Total energy + Delta-G solvation = -4101.353605 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.28751 -41.08831 -39.21622 -38.37309 -36.37793 -36.24803 -34.94217 -33.84317 -33.18553 -30.29174 -29.54739 -28.75759 -28.15830 -27.80308 -25.63001 -24.86352 -23.97663 -22.96188 -21.92508 -21.49416 -20.13617 -19.80920 -19.46221 -18.29316 -18.20919 -17.15688 -16.90439 -16.82129 -16.55877 -16.29780 -15.95848 -15.44491 -15.15973 -15.05828 -14.82058 -14.63355 -14.49152 -14.19300 -13.99486 -13.84755 -13.75678 -13.57118 -13.36303 -13.17515 -13.03271 -12.90693 -12.83021 -12.71236 -12.54915 -12.40470 -12.19284 -12.12200 -12.04741 -11.85795 -11.79109 -11.64389 -11.32218 -11.18096 -11.00738 -10.97549 -10.43375 -10.01155 -9.65930 -9.32044 -8.06122 -5.38145 -0.57814 -0.04610 1.28886 1.34150 1.37790 1.72284 1.99744 2.32571 2.41252 2.56711 3.21054 3.26850 3.32832 3.43316 3.58537 3.77281 3.78202 3.91939 4.00561 4.04730 4.08717 4.18079 4.28463 4.30455 4.42597 4.55106 4.60342 4.77133 4.78686 4.82027 4.82379 4.84589 4.87870 4.91986 4.95993 5.04816 5.05975 5.08199 5.12376 5.19053 5.23444 5.30249 5.32425 5.36359 5.40023 5.53789 5.59313 5.75073 6.17925 6.40863 6.50176 6.73143 7.03801 7.14148 7.79821 7.97270 9.15240 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007781 B = 0.004587 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3597.869859 B = 6102.434981 C = 8292.617037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.069 4.069 3 C -0.141 4.141 4 C -0.120 4.120 5 C 0.155 3.845 6 H 0.065 0.935 7 C 0.146 3.854 8 N -0.758 5.758 9 C -0.226 4.226 10 H 0.068 0.932 11 C -0.050 4.050 12 N -0.977 5.977 13 Si 0.939 3.061 14 H -0.291 1.291 15 H -0.291 1.291 16 H -0.261 1.261 17 N -0.704 5.704 18 C 0.563 3.437 19 O -0.544 6.544 20 C -0.219 4.219 21 C -0.023 4.023 22 C -0.168 4.168 23 C 0.153 3.847 24 N -0.527 5.527 25 C 0.356 3.644 26 O -0.474 6.474 27 C -0.072 4.072 28 C -0.111 4.111 29 C -0.078 4.078 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.053 0.947 33 H 0.049 0.951 34 H 0.074 0.926 35 H 0.060 0.940 36 H 0.040 0.960 37 H 0.062 0.938 38 H 0.043 0.957 39 H 0.046 0.954 40 H 0.052 0.948 41 H 0.361 0.639 42 H 0.258 0.742 43 H 0.406 0.594 44 H 0.156 0.844 45 H 0.415 0.585 46 H 0.091 0.909 47 H 0.115 0.885 48 H 0.075 0.925 49 H 0.116 0.884 50 H 0.086 0.914 51 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.301 -12.261 -19.892 25.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.071 4.071 3 C -0.199 4.199 4 C -0.177 4.177 5 C 0.050 3.950 6 H 0.083 0.917 7 C 0.020 3.980 8 N -0.403 5.403 9 C -0.356 4.356 10 H 0.086 0.914 11 C -0.242 4.242 12 N -0.628 5.628 13 Si 0.768 3.232 14 H -0.218 1.218 15 H -0.218 1.218 16 H -0.186 1.186 17 N -0.355 5.355 18 C 0.350 3.650 19 O -0.423 6.423 20 C -0.226 4.226 21 C -0.048 4.048 22 C -0.170 4.170 23 C 0.015 3.985 24 N -0.246 5.246 25 C 0.176 3.824 26 O -0.283 6.283 27 C -0.109 4.109 28 C -0.149 4.149 29 C -0.115 4.115 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.059 0.941 37 H 0.081 0.919 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.194 0.806 42 H 0.067 0.933 43 H 0.242 0.758 44 H 0.174 0.826 45 H 0.277 0.723 46 H 0.110 0.890 47 H 0.133 0.867 48 H 0.094 0.906 49 H 0.134 0.866 50 H 0.105 0.895 51 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -7.868 -12.575 -20.149 25.021 hybrid contribution 0.367 0.028 0.729 0.816 sum -7.501 -12.547 -19.421 24.307 Atomic orbital electron populations 1.21890 0.93120 1.01961 1.02597 1.20843 0.96979 0.95763 0.93488 1.21898 1.00873 0.94242 1.02842 1.21771 1.00407 0.99177 0.96375 1.21219 0.98558 0.80236 0.94973 0.91721 1.21253 0.98761 0.94499 0.83508 1.42749 1.67748 1.27544 1.02279 1.19044 1.27591 1.05673 0.83341 0.91422 1.25250 1.02401 1.01679 0.94920 1.69834 1.53363 1.41878 0.97704 0.85666 0.78775 0.81397 0.77341 1.21846 1.21762 1.18650 1.45835 1.29123 1.08310 1.52272 1.17859 0.83492 0.84409 0.79193 1.90780 1.24816 1.82400 1.44277 1.21002 0.99205 0.94693 1.07675 1.21457 0.92766 0.96987 0.93600 1.21843 1.00907 0.93292 1.00925 1.22667 0.87586 0.99086 0.89150 1.66404 1.15370 1.19424 1.23423 1.19006 0.85019 0.86387 0.91969 1.84703 1.25750 1.87808 1.30029 1.21293 0.98256 0.89847 1.01520 1.22383 1.00259 0.95009 0.97250 1.21138 0.94006 0.94926 1.01459 0.92078 0.91216 0.92817 0.93196 0.90696 0.92086 0.94065 0.91913 0.93776 0.93593 0.92997 0.80611 0.93324 0.75755 0.82640 0.72326 0.89033 0.86698 0.90607 0.86600 0.89538 0.87383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 7.97 71.98 0.57 -2.25 16 2 C -0.07 -1.65 0.62 -52.18 -0.03 -1.69 16 3 C -0.14 -3.11 8.12 71.98 0.58 -2.52 16 4 C -0.12 -2.93 7.00 71.98 0.50 -2.43 16 5 C 0.16 4.71 1.69 44.99 0.08 4.78 16 6 H 0.06 2.31 7.58 -2.39 -0.02 2.29 16 7 C 0.15 5.11 5.10 86.38 0.44 5.55 16 8 N -0.76 -34.20 5.24 -343.46 -1.80 -36.00 16 9 C -0.23 -12.41 10.47 84.03 0.88 -11.53 16 10 H 0.07 4.01 8.06 -2.91 -0.02 3.98 16 11 C -0.05 -2.92 5.50 84.86 0.47 -2.45 16 12 N -0.98 -61.43 13.97 21.65 0.30 -61.13 16 13 Si 0.94 46.51 27.74 68.60 1.90 48.41 16 14 H -0.29 -14.72 7.11 99.48 0.71 -14.01 16 15 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 16 H -0.26 -12.00 6.52 99.48 0.65 -11.35 16 17 N -0.70 -20.52 3.59 -445.70 -1.60 -22.12 16 18 C 0.56 17.78 6.13 86.69 0.53 18.31 16 19 O -0.54 -19.58 12.32 16.77 0.21 -19.38 16 20 C -0.22 -6.31 5.90 -19.93 -0.12 -6.43 16 21 C -0.02 -0.53 9.64 22.73 0.22 -0.31 16 22 C -0.17 -3.40 6.14 -19.59 -0.12 -3.52 16 23 C 0.15 3.36 7.32 42.79 0.31 3.68 16 24 N -0.53 -14.73 10.36 -295.12 -3.06 -17.79 16 25 C 0.36 10.66 7.77 85.16 0.66 11.32 16 26 O -0.47 -14.11 11.67 -66.49 -0.78 -14.88 16 27 C -0.07 -0.91 6.77 30.57 0.21 -0.71 16 28 C -0.11 -1.01 7.08 31.51 0.22 -0.79 16 29 C -0.08 -0.96 6.77 30.50 0.21 -0.76 16 30 H 0.06 1.30 6.32 -2.39 -0.02 1.28 16 31 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.05 1.08 7.60 -2.39 -0.02 1.06 16 33 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 35 H 0.06 1.39 6.54 -2.39 -0.02 1.37 16 36 H 0.04 1.08 5.77 -2.39 -0.01 1.06 16 37 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.04 1.24 7.52 -2.39 -0.02 1.23 16 39 H 0.05 1.65 6.71 -2.39 -0.02 1.63 16 40 H 0.05 1.72 6.17 -2.39 -0.01 1.70 16 41 H 0.36 16.50 5.20 -92.71 -0.48 16.02 16 42 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 43 H 0.41 10.85 6.71 -92.71 -0.62 10.23 16 44 H 0.16 3.13 6.52 -2.91 -0.02 3.11 16 45 H 0.42 8.66 9.06 -74.05 -0.67 7.99 16 46 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 47 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 48 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 49 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 50 H 0.09 1.08 8.14 -2.39 -0.02 1.07 16 51 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -75.76 395.09 -0.06 -75.82 By element: Atomic # 1 Polarization: 39.66 SS G_CDS: -0.85 Total: 38.81 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: 5.62 Total: 8.26 kcal Atomic # 7 Polarization: -130.89 SS G_CDS: -6.16 Total: -137.04 kcal Atomic # 8 Polarization: -33.69 SS G_CDS: -0.57 Total: -34.26 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 1.90 Total: 48.41 kcal Total: -75.76 -0.06 -75.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725753955.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.010 kcal (2) G-P(sol) polarization free energy of solvation -75.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds