Wall clock time and date at job start Wed Apr 1 2020 05:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46832 * 2 1 4 4 C 1.53004 * 109.46828 * 120.00040 * 2 1 3 5 5 H 1.09001 * 109.46556 * 294.50283 * 4 2 1 6 6 C 1.50701 * 109.46940 * 174.50447 * 4 2 1 7 7 O 1.21270 * 120.00037 * 264.95358 * 6 4 2 8 8 N 1.34777 * 119.99812 * 84.95422 * 6 4 2 9 9 C 1.46500 * 120.00233 * 174.42812 * 8 6 4 10 10 C 1.52999 * 109.47348 * 179.97438 * 9 8 6 11 11 O 1.42895 * 110.88644 * 297.57033 * 10 9 8 12 12 C 1.55157 * 111.00350 * 173.64873 * 10 9 8 13 13 C 1.54318 * 102.94196 * 206.42434 * 12 10 9 14 14 N 1.47022 * 107.27194 * 22.19200 * 13 12 10 15 15 C 1.36937 * 125.64763 * 181.09548 * 14 13 12 16 16 H 1.08005 * 120.00221 * 179.97438 * 15 14 13 17 17 C 1.38813 * 120.00344 * 359.96005 * 15 14 13 18 18 N 1.31623 * 119.99659 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00190 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47280 * 59.99757 * 19 17 15 21 21 H 1.48500 * 109.46728 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.46990 * 299.99715 * 19 17 15 23 23 C 1.47422 * 108.70307 * 1.05958 * 14 13 12 24 24 C 1.50699 * 109.47244 * 54.50179 * 4 2 1 25 25 C 1.38665 * 120.41899 * 240.02170 * 24 4 2 26 26 C 1.38637 * 118.41832 * 179.97438 * 25 24 4 27 27 C 1.38224 * 119.15965 * 359.97438 * 26 25 24 28 28 N 1.31854 * 120.76792 * 0.02562 * 27 26 25 29 29 C 1.31885 * 121.72265 * 359.97438 * 28 27 26 30 30 H 1.09003 * 109.47169 * 60.00306 * 1 2 3 31 31 H 1.09004 * 109.47136 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47577 * 299.99990 * 1 2 3 33 33 H 1.08996 * 109.47225 * 239.99597 * 2 1 3 34 34 H 1.08995 * 109.46733 * 173.56912 * 3 2 1 35 35 H 1.08996 * 109.47034 * 293.56618 * 3 2 1 36 36 H 1.08997 * 109.47380 * 53.56928 * 3 2 1 37 37 H 0.97008 * 120.00219 * 354.42412 * 8 6 4 38 38 H 1.09007 * 109.46795 * 299.99689 * 9 8 6 39 39 H 1.08995 * 109.46963 * 59.99577 * 9 8 6 40 40 H 0.96703 * 113.99975 * 59.30070 * 11 10 9 41 41 H 1.09008 * 110.72091 * 324.78394 * 12 10 9 42 42 H 1.08994 * 110.72330 * 88.05951 * 12 10 9 43 43 H 1.09000 * 109.88137 * 262.77497 * 13 12 10 44 44 H 1.09001 * 109.88413 * 141.60864 * 13 12 10 45 45 H 0.96998 * 119.99833 * 180.02562 * 18 17 15 46 46 H 1.08996 * 110.36505 * 217.03224 * 23 14 13 47 47 H 1.08997 * 110.36537 * 94.71533 * 23 14 13 48 48 H 1.07993 * 120.79114 * 0.02562 * 25 24 4 49 49 H 1.07994 * 120.41725 * 179.97438 * 26 25 24 50 50 H 1.07999 * 119.61723 * 179.97438 * 27 26 25 51 51 H 1.07999 * 119.61488 * 180.28112 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.7592 -0.1537 2.1365 6 6 3.5408 -0.8402 1.1832 7 8 4.0504 -1.8502 0.7462 8 7 4.3167 0.1759 1.6096 9 6 5.7720 0.0151 1.6601 10 6 6.4103 1.3066 2.1754 11 8 6.1458 2.3949 1.2881 12 6 7.9355 1.1243 2.3941 13 6 8.2552 2.1670 3.4859 14 7 6.9993 2.4579 4.1927 15 6 6.8503 3.3503 5.2206 16 1 5.8812 3.4932 5.6756 17 6 7.9447 4.0712 5.6782 18 7 9.1259 3.8965 5.1244 19 14 7.7416 5.2880 7.0809 20 1 7.2517 4.5749 8.2878 21 1 9.0505 5.9229 7.3789 22 1 6.7611 6.3331 6.6914 23 6 5.9268 1.6305 3.6110 24 6 1.4295 -2.0973 1.3192 25 6 0.6469 -2.4639 2.4036 26 6 0.1054 -3.7400 2.4251 27 6 0.3614 -4.5981 1.3721 28 7 1.1106 -4.2152 0.3569 29 6 1.6419 -3.0093 0.3030 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 3.1238 1.4446 0.1151 35 1 1.7737 1.9220 -0.9419 36 1 1.5857 1.9885 0.8268 37 1 3.9116 1.0138 1.8832 38 1 6.0237 -0.8074 2.3297 39 1 6.1484 -0.2021 0.6605 40 1 5.2050 2.5781 1.1597 41 1 8.1570 0.1168 2.7465 42 1 8.4853 1.3434 1.4789 43 1 8.6419 3.0771 3.0274 44 1 8.9876 1.7607 4.1835 45 1 9.8908 4.3999 5.4443 46 1 4.9915 2.1893 3.5793 47 1 5.8019 0.7126 4.1855 48 1 0.4628 -1.7716 3.2117 49 1 -0.5087 -4.0595 3.2540 50 1 -0.0564 -5.5939 1.3814 51 1 2.2465 -2.7300 -0.5472 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733495392.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:19 Heat of formation + Delta-G solvation = -29.676357 kcal Electronic energy + Delta-G solvation = -31472.188653 eV Core-core repulsion = 27372.055010 eV Total energy + Delta-G solvation = -4100.133643 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.09737 -39.72072 -38.52962 -36.49396 -35.17713 -34.22891 -32.78149 -32.14377 -31.65101 -29.80433 -28.77419 -27.45722 -27.35761 -25.62092 -23.85677 -23.71292 -22.70181 -21.27859 -20.42290 -20.12893 -19.79224 -17.87395 -17.37511 -16.95677 -16.60136 -16.16522 -15.85364 -15.64927 -15.31719 -14.75812 -14.59532 -14.49149 -14.18601 -13.97673 -13.74194 -13.63706 -13.34684 -13.27988 -13.07223 -12.92061 -12.82944 -12.50221 -12.31302 -12.22113 -11.95213 -11.75139 -11.48711 -11.25395 -11.09324 -11.02674 -10.90495 -10.76186 -10.38681 -10.27027 -10.17192 -10.08207 -9.81566 -9.69954 -9.61959 -9.46416 -9.18680 -9.08864 -8.61799 -6.86795 -5.74282 -3.08225 0.88119 1.08026 2.47090 3.00036 3.37670 3.41642 3.43573 3.64755 4.07749 4.29492 4.41209 4.43309 4.45419 4.48278 4.63678 4.70895 4.76806 4.83049 4.86434 4.94965 5.08474 5.10275 5.24699 5.29404 5.32812 5.33856 5.48490 5.50284 5.54757 5.60419 5.62854 5.74557 5.79266 5.85861 5.88870 5.91042 5.93933 6.05279 6.13673 6.26337 6.31415 6.40191 6.49398 6.50714 6.56957 7.31926 7.49768 7.61102 7.80391 7.80701 7.93405 8.06870 8.22320 9.17637 9.77820 10.42937 11.37325 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015809 B = 0.002422 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.679655 B =11557.106482 C =11707.510195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.081 4.081 3 C -0.162 4.162 4 C -0.061 4.061 5 H 0.102 0.898 6 C 0.522 3.478 7 O -0.532 6.532 8 N -0.724 5.724 9 C 0.103 3.897 10 C 0.102 3.898 11 O -0.535 6.535 12 C -0.128 4.128 13 C 0.182 3.818 14 N -0.598 5.598 15 C -0.232 4.232 16 H 0.076 0.924 17 C -0.006 4.006 18 N -0.920 5.920 19 Si 0.913 3.087 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.285 1.285 23 C 0.118 3.882 24 C -0.120 4.120 25 C -0.069 4.069 26 C -0.178 4.178 27 C 0.095 3.905 28 N -0.488 5.488 29 C 0.138 3.862 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.079 0.921 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.399 0.601 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.362 0.638 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.051 0.949 44 H 0.044 0.956 45 H 0.254 0.746 46 H 0.037 0.963 47 H 0.026 0.974 48 H 0.133 0.867 49 H 0.134 0.866 50 H 0.153 0.847 51 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.141 -10.529 -9.585 23.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.100 4.100 3 C -0.219 4.219 4 C -0.083 4.083 5 H 0.121 0.879 6 C 0.307 3.693 7 O -0.408 6.408 8 N -0.377 5.377 9 C -0.021 4.021 10 C 0.060 3.940 11 O -0.339 6.339 12 C -0.167 4.167 13 C 0.057 3.943 14 N -0.324 5.324 15 C -0.360 4.360 16 H 0.094 0.906 17 C -0.203 4.203 18 N -0.567 5.567 19 Si 0.743 3.257 20 H -0.212 1.212 21 H -0.215 1.215 22 H -0.212 1.212 23 C -0.009 4.009 24 C -0.122 4.122 25 C -0.095 4.095 26 C -0.198 4.198 27 C -0.062 4.062 28 N -0.196 5.196 29 C -0.019 4.019 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.235 0.765 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.207 0.793 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.069 0.931 44 H 0.062 0.938 45 H 0.064 0.936 46 H 0.055 0.945 47 H 0.043 0.957 48 H 0.151 0.849 49 H 0.152 0.848 50 H 0.170 0.830 51 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -17.768 -11.684 -10.455 23.696 hybrid contribution -0.978 1.619 1.821 2.626 sum -18.746 -10.065 -8.634 22.962 Atomic orbital electron populations 1.21839 0.94014 1.02086 1.02232 1.21072 0.96660 0.96238 0.96055 1.22065 1.01753 0.95083 1.02994 1.20364 0.91873 0.94393 1.01654 0.87948 1.20313 0.88651 0.83096 0.77228 1.90717 1.75321 1.29897 1.44898 1.46138 1.07694 1.16673 1.67183 1.22069 0.78797 0.98826 1.02425 1.22717 0.97523 0.84015 0.89782 1.86657 1.28374 1.52310 1.66557 1.22910 0.91476 1.01067 1.01228 1.21140 0.88365 0.94567 0.90222 1.44330 1.03508 1.45883 1.38672 1.18962 0.94936 1.14326 1.07772 0.90607 1.24809 0.95564 1.00108 0.99787 1.69949 0.99205 1.44143 1.43370 0.86192 0.76738 0.80943 0.81810 1.21187 1.21544 1.21159 1.22119 0.92924 0.94816 0.91071 1.20294 0.99476 0.96031 0.96434 1.21489 0.94720 0.96375 0.96897 1.22083 1.02321 0.94804 1.00551 1.22793 0.94274 0.99632 0.89497 1.67765 1.08627 1.17357 1.25845 1.22659 0.93815 0.87899 0.97546 0.92110 0.92543 0.92276 0.90236 0.91904 0.91614 0.91840 0.76513 0.90463 0.90609 0.79252 0.90929 0.90899 0.93110 0.93778 0.93614 0.94510 0.95686 0.84864 0.84826 0.82970 0.82677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 8.86 37.16 0.33 -0.60 16 2 C -0.08 -0.60 2.25 -90.62 -0.20 -0.80 16 3 C -0.16 -1.06 8.80 37.16 0.33 -0.74 16 4 C -0.06 -0.53 1.98 -92.92 -0.18 -0.71 16 5 H 0.10 0.72 7.93 -51.93 -0.41 0.31 16 6 C 0.52 6.14 6.41 -10.98 -0.07 6.07 16 7 O -0.53 -8.20 14.60 5.57 0.08 -8.12 16 8 N -0.72 -8.04 4.20 -60.30 -0.25 -8.29 16 9 C 0.10 1.40 4.90 -4.04 -0.02 1.38 16 10 C 0.10 1.66 0.95 -88.47 -0.08 1.58 16 11 O -0.54 -8.82 13.19 -35.23 -0.46 -9.28 16 12 C -0.13 -2.37 6.16 -24.90 -0.15 -2.52 16 13 C 0.18 4.39 5.37 -3.07 -0.02 4.37 16 14 N -0.60 -14.89 3.39 -170.08 -0.58 -15.47 16 15 C -0.23 -6.35 10.28 -15.06 -0.15 -6.50 16 16 H 0.08 1.98 7.83 -52.48 -0.41 1.57 16 17 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 18 N -0.92 -26.91 10.31 55.49 0.57 -26.34 16 19 Si 0.91 21.84 29.55 -169.99 -5.02 16.82 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 C 0.12 2.25 5.93 -2.53 -0.02 2.23 16 24 C -0.12 -1.19 3.14 -104.48 -0.33 -1.52 16 25 C -0.07 -0.59 9.81 -39.28 -0.39 -0.98 16 26 C -0.18 -1.44 10.11 -39.44 -0.40 -1.84 16 27 C 0.09 0.90 11.18 -17.55 -0.20 0.70 16 28 N -0.49 -5.90 10.36 -13.25 -0.14 -6.04 16 29 C 0.14 1.61 9.08 -17.55 -0.16 1.45 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.42 7.02 -51.93 -0.36 0.05 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.08 0.66 7.61 -51.93 -0.40 0.26 16 34 H 0.06 0.46 5.68 -51.93 -0.30 0.16 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.40 3.69 6.15 -40.82 -0.25 3.44 16 38 H 0.08 1.11 8.11 -51.93 -0.42 0.69 16 39 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.36 4.42 8.16 45.56 0.37 4.79 16 41 H 0.07 1.21 8.01 -51.92 -0.42 0.79 16 42 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 43 H 0.05 1.39 7.38 -51.93 -0.38 1.01 16 44 H 0.04 1.17 7.51 -51.93 -0.39 0.78 16 45 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 46 H 0.04 0.65 7.97 -51.93 -0.41 0.24 16 47 H 0.03 0.49 8.04 -51.93 -0.42 0.07 16 48 H 0.13 0.85 8.00 -52.49 -0.42 0.43 16 49 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 50 H 0.15 1.02 8.06 -52.49 -0.42 0.60 16 51 H 0.16 1.86 6.98 -52.49 -0.37 1.50 16 LS Contribution 403.28 15.07 6.08 6.08 Total: -1.00 -34.36 403.28 -9.04 -43.40 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -7.50 Total: 5.93 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -1.81 Total: 1.32 kcal Atomic # 7 Polarization: -55.75 SS G_CDS: -0.40 Total: -56.14 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: -0.38 Total: -17.40 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.36 -9.04 -43.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733495392.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.723 kcal (2) G-P(sol) polarization free energy of solvation -34.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds