Wall clock time and date at job start Wed Apr 1 2020 05:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46832 * 2 1 4 4 C 1.53004 * 109.46828 * 120.00040 * 2 1 3 5 5 H 1.09001 * 109.46556 * 294.50283 * 4 2 1 6 6 C 1.50701 * 109.46940 * 174.50447 * 4 2 1 7 7 O 1.21270 * 120.00037 * 264.95358 * 6 4 2 8 8 N 1.34777 * 119.99812 * 84.95422 * 6 4 2 9 9 C 1.46500 * 120.00233 * 174.42812 * 8 6 4 10 10 C 1.52999 * 109.47348 * 179.97438 * 9 8 6 11 11 O 1.42895 * 110.88644 * 297.57033 * 10 9 8 12 12 C 1.55157 * 111.00350 * 173.64873 * 10 9 8 13 13 C 1.54318 * 102.94196 * 206.42434 * 12 10 9 14 14 N 1.47022 * 107.27194 * 22.19200 * 13 12 10 15 15 C 1.36937 * 125.64763 * 181.09548 * 14 13 12 16 16 H 1.08005 * 120.00221 * 179.97438 * 15 14 13 17 17 C 1.38813 * 120.00344 * 359.96005 * 15 14 13 18 18 N 1.31623 * 119.99659 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00190 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47280 * 59.99757 * 19 17 15 21 21 H 1.48500 * 109.46728 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.46990 * 299.99715 * 19 17 15 23 23 C 1.47422 * 108.70307 * 1.05958 * 14 13 12 24 24 C 1.50699 * 109.47244 * 54.50179 * 4 2 1 25 25 C 1.38665 * 120.41899 * 240.02170 * 24 4 2 26 26 C 1.38637 * 118.41832 * 179.97438 * 25 24 4 27 27 C 1.38224 * 119.15965 * 359.97438 * 26 25 24 28 28 N 1.31854 * 120.76792 * 0.02562 * 27 26 25 29 29 C 1.31885 * 121.72265 * 359.97438 * 28 27 26 30 30 H 1.09003 * 109.47169 * 60.00306 * 1 2 3 31 31 H 1.09004 * 109.47136 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47577 * 299.99990 * 1 2 3 33 33 H 1.08996 * 109.47225 * 239.99597 * 2 1 3 34 34 H 1.08995 * 109.46733 * 173.56912 * 3 2 1 35 35 H 1.08996 * 109.47034 * 293.56618 * 3 2 1 36 36 H 1.08997 * 109.47380 * 53.56928 * 3 2 1 37 37 H 0.97008 * 120.00219 * 354.42412 * 8 6 4 38 38 H 1.09007 * 109.46795 * 299.99689 * 9 8 6 39 39 H 1.08995 * 109.46963 * 59.99577 * 9 8 6 40 40 H 0.96703 * 113.99975 * 59.30070 * 11 10 9 41 41 H 1.09008 * 110.72091 * 324.78394 * 12 10 9 42 42 H 1.08994 * 110.72330 * 88.05951 * 12 10 9 43 43 H 1.09000 * 109.88137 * 262.77497 * 13 12 10 44 44 H 1.09001 * 109.88413 * 141.60864 * 13 12 10 45 45 H 0.96998 * 119.99833 * 180.02562 * 18 17 15 46 46 H 1.08996 * 110.36505 * 217.03224 * 23 14 13 47 47 H 1.08997 * 110.36537 * 94.71533 * 23 14 13 48 48 H 1.07993 * 120.79114 * 0.02562 * 25 24 4 49 49 H 1.07994 * 120.41725 * 179.97438 * 26 25 24 50 50 H 1.07999 * 119.61723 * 179.97438 * 27 26 25 51 51 H 1.07999 * 119.61488 * 180.28112 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.7592 -0.1537 2.1365 6 6 3.5408 -0.8402 1.1832 7 8 4.0504 -1.8502 0.7462 8 7 4.3167 0.1759 1.6096 9 6 5.7720 0.0151 1.6601 10 6 6.4103 1.3066 2.1754 11 8 6.1458 2.3949 1.2881 12 6 7.9355 1.1243 2.3941 13 6 8.2552 2.1670 3.4859 14 7 6.9993 2.4579 4.1927 15 6 6.8503 3.3503 5.2206 16 1 5.8812 3.4932 5.6756 17 6 7.9447 4.0712 5.6782 18 7 9.1259 3.8965 5.1244 19 14 7.7416 5.2880 7.0809 20 1 7.2517 4.5749 8.2878 21 1 9.0505 5.9229 7.3789 22 1 6.7611 6.3331 6.6914 23 6 5.9268 1.6305 3.6110 24 6 1.4295 -2.0973 1.3192 25 6 0.6469 -2.4639 2.4036 26 6 0.1054 -3.7400 2.4251 27 6 0.3614 -4.5981 1.3721 28 7 1.1106 -4.2152 0.3569 29 6 1.6419 -3.0093 0.3030 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 3.1238 1.4446 0.1151 35 1 1.7737 1.9220 -0.9419 36 1 1.5857 1.9885 0.8268 37 1 3.9116 1.0138 1.8832 38 1 6.0237 -0.8074 2.3297 39 1 6.1484 -0.2021 0.6605 40 1 5.2050 2.5781 1.1597 41 1 8.1570 0.1168 2.7465 42 1 8.4853 1.3434 1.4789 43 1 8.6419 3.0771 3.0274 44 1 8.9876 1.7607 4.1835 45 1 9.8908 4.3999 5.4443 46 1 4.9915 2.1893 3.5793 47 1 5.8019 0.7126 4.1855 48 1 0.4628 -1.7716 3.2117 49 1 -0.5087 -4.0595 3.2540 50 1 -0.0564 -5.5939 1.3814 51 1 2.2465 -2.7300 -0.5472 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733495392.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:18 Heat of formation + Delta-G solvation = -54.239616 kcal Electronic energy + Delta-G solvation = -31473.253796 eV Core-core repulsion = 27372.055010 eV Total energy + Delta-G solvation = -4101.198786 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.90357 -40.71881 -39.81272 -37.21699 -36.77331 -35.34526 -34.00133 -33.46006 -32.31780 -31.45896 -30.09745 -28.53659 -27.88772 -27.23465 -25.26121 -24.56531 -23.48258 -22.41351 -21.71664 -21.42656 -20.86614 -18.98052 -18.68552 -18.07901 -17.67130 -17.06863 -16.81948 -16.70118 -16.59035 -16.05580 -15.81679 -15.75177 -15.25202 -15.20769 -14.87680 -14.61856 -14.32802 -14.25825 -13.94572 -13.89075 -13.73307 -13.59163 -13.44650 -13.23612 -12.98013 -12.92513 -12.83912 -12.72755 -12.35852 -12.11510 -12.08514 -12.03511 -11.81728 -11.78461 -11.73672 -11.65108 -11.00153 -10.89693 -10.66866 -10.56599 -10.35076 -10.15741 -9.85008 -8.88130 -7.83618 -5.19166 0.17964 0.39652 1.46637 1.50029 1.56212 1.56419 2.07415 2.50125 2.92118 3.17603 3.34967 3.41184 3.46622 3.58608 3.68564 3.72314 3.86421 3.93825 3.97911 4.03343 4.11083 4.12258 4.23427 4.35868 4.47608 4.50216 4.58630 4.64898 4.68714 4.72156 4.81851 4.84731 4.91189 4.93183 4.96851 5.01196 5.03251 5.08579 5.22082 5.23539 5.30886 5.31940 5.41708 5.43852 5.45084 5.63945 5.76717 5.81907 6.19650 6.43697 6.82476 7.07981 7.09970 7.16938 7.77851 8.41931 9.26999 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015809 B = 0.002422 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.679655 B =11557.106482 C =11707.510195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.077 4.077 3 C -0.161 4.161 4 C -0.052 4.052 5 H 0.129 0.871 6 C 0.522 3.478 7 O -0.571 6.571 8 N -0.714 5.714 9 C 0.119 3.881 10 C 0.123 3.877 11 O -0.551 6.551 12 C -0.122 4.122 13 C 0.190 3.810 14 N -0.620 5.620 15 C -0.240 4.240 16 H 0.087 0.913 17 C -0.069 4.069 18 N -0.953 5.953 19 Si 0.979 3.021 20 H -0.276 1.276 21 H -0.298 1.298 22 H -0.275 1.275 23 C 0.114 3.886 24 C -0.126 4.126 25 C -0.072 4.072 26 C -0.171 4.171 27 C 0.080 3.920 28 N -0.521 5.521 29 C 0.116 3.884 30 H 0.065 0.935 31 H 0.043 0.957 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.411 0.589 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.382 0.618 41 H 0.092 0.908 42 H 0.081 0.919 43 H 0.007 0.993 44 H 0.008 0.992 45 H 0.246 0.754 46 H 0.058 0.942 47 H 0.033 0.967 48 H 0.162 0.838 49 H 0.166 0.834 50 H 0.174 0.826 51 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.221 -10.390 -8.653 26.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.096 4.096 3 C -0.218 4.218 4 C -0.074 4.074 5 H 0.147 0.853 6 C 0.309 3.691 7 O -0.450 6.450 8 N -0.367 5.367 9 C -0.006 4.006 10 C 0.081 3.919 11 O -0.358 6.358 12 C -0.161 4.161 13 C 0.065 3.935 14 N -0.346 5.346 15 C -0.369 4.369 16 H 0.105 0.895 17 C -0.262 4.262 18 N -0.602 5.602 19 Si 0.807 3.193 20 H -0.202 1.202 21 H -0.225 1.225 22 H -0.201 1.201 23 C -0.012 4.012 24 C -0.128 4.128 25 C -0.098 4.098 26 C -0.191 4.191 27 C -0.076 4.076 28 N -0.231 5.231 29 C -0.040 4.040 30 H 0.084 0.916 31 H 0.062 0.938 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.249 0.751 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.231 0.769 41 H 0.111 0.889 42 H 0.099 0.901 43 H 0.026 0.974 44 H 0.026 0.974 45 H 0.055 0.945 46 H 0.076 0.924 47 H 0.051 0.949 48 H 0.179 0.821 49 H 0.183 0.817 50 H 0.191 0.809 51 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -20.917 -11.539 -9.535 25.721 hybrid contribution -0.085 1.515 1.505 2.138 sum -21.002 -10.024 -8.030 24.618 Atomic orbital electron populations 1.21786 0.93013 1.01572 1.03214 1.21031 0.97357 0.96446 0.94745 1.22070 1.01263 0.94498 1.03961 1.20395 0.89238 0.94408 1.03343 0.85291 1.20840 0.89891 0.82261 0.76058 1.90713 1.76251 1.31499 1.46548 1.45997 1.06538 1.17247 1.66963 1.21719 0.80182 0.96707 1.02014 1.22374 0.95806 0.85220 0.88512 1.86626 1.30529 1.52436 1.66208 1.22794 0.93598 1.00174 0.99527 1.20816 0.87911 0.94058 0.90704 1.44622 1.05241 1.46196 1.38585 1.19437 0.95258 1.14134 1.08087 0.89476 1.25690 0.95454 1.02452 1.02625 1.70194 0.99797 1.45281 1.44964 0.85143 0.76271 0.78800 0.79060 1.20167 1.22482 1.20066 1.22346 0.92241 0.94339 0.92254 1.20389 0.99836 0.96148 0.96416 1.21881 0.93878 0.97114 0.96908 1.22451 1.01655 0.94299 1.00679 1.23263 0.93954 1.01006 0.89408 1.67691 1.09915 1.17911 1.27547 1.22522 0.94745 0.88674 0.98102 0.91575 0.93772 0.90833 0.91962 0.92697 0.91268 0.90168 0.75091 0.90845 0.90701 0.76910 0.88943 0.90071 0.97428 0.97419 0.94529 0.92413 0.94910 0.82060 0.81680 0.80852 0.84468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 8.86 71.98 0.64 -0.83 16 2 C -0.08 -0.99 2.25 -10.79 -0.02 -1.01 16 3 C -0.16 -1.68 8.80 71.98 0.63 -1.05 16 4 C -0.05 -0.79 1.98 -12.28 -0.02 -0.81 16 5 H 0.13 1.27 7.93 -2.39 -0.02 1.25 16 6 C 0.52 11.42 6.41 87.66 0.56 11.98 16 7 O -0.57 -17.41 14.60 -3.00 -0.04 -17.45 16 8 N -0.71 -14.06 4.20 -463.07 -1.94 -16.01 16 9 C 0.12 2.99 4.90 86.38 0.42 3.41 16 10 C 0.12 3.80 0.95 -9.40 -0.01 3.79 16 11 O -0.55 -17.07 13.19 -148.98 -1.96 -19.03 16 12 C -0.12 -4.46 6.16 31.78 0.20 -4.27 16 13 C 0.19 9.47 5.37 86.73 0.47 9.94 16 14 N -0.62 -30.83 3.39 -692.01 -2.35 -33.18 16 15 C -0.24 -13.10 10.28 84.03 0.86 -12.23 16 16 H 0.09 4.42 7.83 -2.91 -0.02 4.40 16 17 C -0.07 -3.93 5.49 84.86 0.47 -3.46 16 18 N -0.95 -57.81 10.31 21.65 0.22 -57.58 16 19 Si 0.98 45.14 29.55 68.60 2.03 47.17 16 20 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 21 H -0.30 -14.04 7.11 99.48 0.71 -13.34 16 22 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 23 C 0.11 4.11 5.93 86.85 0.51 4.63 16 24 C -0.13 -2.30 3.14 -19.78 -0.06 -2.36 16 25 C -0.07 -1.02 9.81 22.47 0.22 -0.80 16 26 C -0.17 -2.30 10.11 22.36 0.23 -2.07 16 27 C 0.08 1.41 11.18 84.69 0.95 2.36 16 28 N -0.52 -12.71 10.36 -195.84 -2.03 -14.74 16 29 C 0.12 2.75 9.08 84.67 0.77 3.52 16 30 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.04 0.59 7.02 -2.38 -0.02 0.57 16 32 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.06 1.02 7.61 -2.39 -0.02 1.00 16 34 H 0.05 0.66 5.68 -2.39 -0.01 0.65 16 35 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.41 6.17 6.15 -92.70 -0.57 5.60 16 38 H 0.07 1.97 8.11 -2.38 -0.02 1.95 16 39 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.38 8.21 8.16 -74.06 -0.60 7.61 16 41 H 0.09 2.99 8.01 -2.38 -0.02 2.97 16 42 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 43 H 0.01 0.43 7.38 -2.39 -0.02 0.41 16 44 H 0.01 0.43 7.51 -2.39 -0.02 0.41 16 45 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 46 H 0.06 1.85 7.97 -2.39 -0.02 1.83 16 47 H 0.03 1.18 8.04 -2.39 -0.02 1.16 16 48 H 0.16 1.32 8.00 -2.91 -0.02 1.30 16 49 H 0.17 1.11 8.06 -2.91 -0.02 1.09 16 50 H 0.17 2.05 8.06 -2.91 -0.02 2.03 16 51 H 0.14 3.55 6.98 -2.91 -0.02 3.53 16 Total: -1.00 -78.02 403.28 0.49 -77.53 By element: Atomic # 1 Polarization: 22.80 SS G_CDS: -0.23 Total: 22.57 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: 6.80 Total: 10.72 kcal Atomic # 7 Polarization: -115.41 SS G_CDS: -6.10 Total: -121.50 kcal Atomic # 8 Polarization: -34.47 SS G_CDS: -2.01 Total: -36.48 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -78.02 0.49 -77.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733495392.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.288 kcal (2) G-P(sol) polarization free energy of solvation -78.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds