Wall clock time and date at job start Wed Apr 1 2020 05:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46856 * 2 1 4 4 C 1.52996 * 109.46791 * 119.99621 * 2 1 3 5 5 H 1.09000 * 109.47264 * 305.54102 * 4 2 1 6 6 C 1.50699 * 109.47059 * 65.54716 * 4 2 1 7 7 O 1.21273 * 120.00534 * 106.77609 * 6 4 2 8 8 N 1.34783 * 119.99367 * 286.77009 * 6 4 2 9 9 C 1.46507 * 119.99388 * 176.43754 * 8 6 4 10 10 C 1.53004 * 109.46841 * 180.02562 * 9 8 6 11 11 O 1.42896 * 110.77962 * 298.21629 * 10 9 8 12 12 C 1.55155 * 110.72002 * 174.97591 * 10 9 8 13 13 C 1.54912 * 101.58064 * 206.13462 * 12 10 9 14 14 N 1.47433 * 104.83362 * 37.00828 * 13 12 10 15 15 C 1.36928 * 125.64517 * 155.89021 * 14 13 12 16 16 H 1.08006 * 119.99488 * 179.97438 * 15 14 13 17 17 C 1.38808 * 120.00605 * 359.97438 * 15 14 13 18 18 N 1.31620 * 119.99746 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00170 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47362 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47066 * 120.00545 * 19 17 15 22 22 H 1.48502 * 109.47369 * 239.99982 * 19 17 15 23 23 C 1.47022 * 108.69993 * 335.87352 * 14 13 12 24 24 C 1.50702 * 109.46718 * 185.54148 * 4 2 1 25 25 C 1.38672 * 120.41757 * 120.00602 * 24 4 2 26 26 C 1.38624 * 118.42042 * 180.02562 * 25 24 4 27 27 C 1.38229 * 119.16458 * 359.97438 * 26 25 24 28 28 N 1.31856 * 120.75816 * 0.02562 * 27 26 25 29 29 C 1.31890 * 121.72883 * 359.69910 * 28 27 26 30 30 H 1.08997 * 109.47503 * 307.26313 * 1 2 3 31 31 H 1.09002 * 109.47409 * 67.25897 * 1 2 3 32 32 H 1.08996 * 109.47094 * 187.26102 * 1 2 3 33 33 H 1.09000 * 109.46994 * 239.99574 * 2 1 3 34 34 H 1.09005 * 109.47060 * 299.99451 * 3 2 1 35 35 H 1.09000 * 109.47667 * 59.99986 * 3 2 1 36 36 H 1.09000 * 109.46980 * 179.97438 * 3 2 1 37 37 H 0.96992 * 120.00490 * 356.43808 * 8 6 4 38 38 H 1.08999 * 109.47185 * 60.00233 * 9 8 6 39 39 H 1.08996 * 109.47177 * 299.99762 * 9 8 6 40 40 H 0.96703 * 114.00347 * 61.78089 * 11 10 9 41 41 H 1.08999 * 111.00361 * 324.20872 * 12 10 9 42 42 H 1.09001 * 111.00517 * 88.06185 * 12 10 9 43 43 H 1.08999 * 110.36943 * 155.84453 * 13 12 10 44 44 H 1.09005 * 110.36598 * 278.17096 * 13 12 10 45 45 H 0.96999 * 119.99625 * 180.02562 * 18 17 15 46 46 H 1.08997 * 109.87846 * 241.64094 * 23 14 13 47 47 H 1.08997 * 109.88368 * 120.47616 * 23 14 13 48 48 H 1.08000 * 120.79257 * 0.02562 * 25 24 4 49 49 H 1.08002 * 120.41853 * 179.97438 * 26 25 24 50 50 H 1.07999 * 119.62276 * 179.97438 * 27 26 25 51 51 H 1.07997 * 119.61841 * 180.31306 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.5978 -0.2678 2.1365 6 6 1.6528 -2.1761 1.1826 7 8 2.4947 -3.0176 0.9507 8 7 0.3708 -2.5420 1.3808 9 6 -0.0201 -3.9468 1.2390 10 6 -1.5184 -4.0894 1.5145 11 8 -1.8278 -3.6934 2.8522 12 6 -1.9892 -5.5439 1.2498 13 6 -3.4856 -5.3296 0.9111 14 7 -3.5228 -4.0699 0.1461 15 6 -4.4969 -3.7056 -0.7446 16 1 -4.4331 -2.7567 -1.2564 17 6 -5.5665 -4.5558 -0.9896 18 7 -5.6445 -5.7120 -0.3655 19 14 -6.8957 -4.0585 -2.2042 20 1 -6.5773 -2.7216 -2.7667 21 1 -6.9599 -5.0550 -3.3033 22 1 -8.2066 -4.0039 -1.5085 23 6 -2.3409 -3.2694 0.4983 24 6 3.5407 -0.6034 1.3198 25 6 4.1464 0.0119 2.4048 26 6 5.5298 0.0980 2.4269 27 6 6.2544 -0.4291 1.3743 28 7 5.6444 -1.0075 0.3585 29 6 4.3307 -1.1120 0.3066 30 1 -0.3634 0.6222 0.8178 31 1 -0.3634 0.3973 -0.9478 32 1 -0.3633 -1.0194 0.1299 33 1 1.8933 -0.5139 -0.8900 34 1 1.6766 1.9563 -0.8901 35 1 1.6766 1.9564 0.8900 36 1 3.1299 1.4425 0.0005 37 1 -0.2928 -1.8753 1.6172 38 1 0.5399 -4.5534 1.9507 39 1 0.1961 -4.2836 0.2252 40 1 -1.6241 -2.7680 3.0456 41 1 -1.4559 -5.9795 0.4049 42 1 -1.8748 -6.1600 2.1417 43 1 -3.8587 -6.1538 0.3031 44 1 -4.0718 -5.2357 1.8253 45 1 -6.3917 -6.3063 -0.5370 46 1 -2.6524 -2.3267 0.9481 47 1 -1.7439 -3.0778 -0.3933 48 1 3.5546 0.4146 3.2135 49 1 6.0352 0.5710 3.2560 50 1 7.3325 -0.3658 1.3837 51 1 3.8668 -1.5971 -0.5396 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733495393.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:22 Heat of formation + Delta-G solvation = -25.293439 kcal Electronic energy + Delta-G solvation = -31600.966151 eV Core-core repulsion = 27501.022565 eV Total energy + Delta-G solvation = -4099.943586 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.11078 -39.75034 -38.54790 -36.48565 -35.22158 -34.31012 -32.75247 -32.13852 -31.62352 -29.79713 -28.76458 -27.45248 -27.29141 -25.64175 -23.86760 -23.70164 -22.72011 -21.19457 -20.49918 -20.06412 -19.86330 -17.87884 -17.38900 -17.00580 -16.60259 -16.21414 -15.87737 -15.50547 -15.33615 -14.82351 -14.67116 -14.47032 -14.18763 -13.87725 -13.70620 -13.58703 -13.31430 -13.26668 -13.06483 -12.96687 -12.79999 -12.41630 -12.36556 -12.17654 -12.13476 -11.64845 -11.40027 -11.20545 -11.07649 -11.02891 -10.92678 -10.78491 -10.41262 -10.20333 -10.15916 -10.03838 -9.76234 -9.73212 -9.62052 -9.45199 -9.13797 -9.10375 -8.69834 -6.90633 -5.70690 -3.13248 0.88922 1.07712 2.48070 3.00974 3.36179 3.41238 3.44115 3.65174 4.08178 4.30848 4.40344 4.41209 4.42579 4.51620 4.62759 4.71013 4.76844 4.83615 4.86917 4.99020 5.09041 5.13862 5.27727 5.32578 5.35648 5.38222 5.45342 5.56851 5.58674 5.59753 5.62292 5.81967 5.83351 5.85108 5.91876 5.94141 6.03326 6.05820 6.18950 6.25835 6.35020 6.44957 6.48901 6.54787 6.58026 7.31741 7.51811 7.56562 7.79787 7.80930 7.87136 8.07727 8.29820 9.15611 9.76161 10.40131 11.33097 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018594 B = 0.002481 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.501263 B =11284.335812 C =12069.204459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.082 4.082 3 C -0.144 4.144 4 C -0.060 4.060 5 H 0.103 0.897 6 C 0.519 3.481 7 O -0.531 6.531 8 N -0.724 5.724 9 C 0.103 3.897 10 C 0.104 3.896 11 O -0.542 6.542 12 C -0.128 4.128 13 C 0.156 3.844 14 N -0.599 5.599 15 C -0.225 4.225 16 H 0.077 0.923 17 C -0.010 4.010 18 N -0.920 5.920 19 Si 0.915 3.085 20 H -0.280 1.280 21 H -0.290 1.290 22 H -0.290 1.290 23 C 0.117 3.883 24 C -0.116 4.116 25 C -0.070 4.070 26 C -0.178 4.178 27 C 0.094 3.906 28 N -0.486 5.486 29 C 0.139 3.861 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.055 0.945 37 H 0.400 0.600 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.363 0.637 41 H 0.076 0.924 42 H 0.071 0.929 43 H 0.108 0.892 44 H 0.018 0.982 45 H 0.253 0.747 46 H 0.022 0.978 47 H 0.031 0.969 48 H 0.132 0.868 49 H 0.133 0.867 50 H 0.153 0.847 51 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.670 13.996 6.154 24.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.101 4.101 3 C -0.201 4.201 4 C -0.082 4.082 5 H 0.121 0.879 6 C 0.305 3.695 7 O -0.407 6.407 8 N -0.378 5.378 9 C -0.021 4.021 10 C 0.063 3.937 11 O -0.346 6.346 12 C -0.167 4.167 13 C 0.031 3.969 14 N -0.325 5.325 15 C -0.353 4.353 16 H 0.095 0.905 17 C -0.206 4.206 18 N -0.568 5.568 19 Si 0.746 3.254 20 H -0.205 1.205 21 H -0.217 1.217 22 H -0.217 1.217 23 C -0.010 4.010 24 C -0.118 4.118 25 C -0.096 4.096 26 C -0.198 4.198 27 C -0.062 4.062 28 N -0.195 5.195 29 C -0.018 4.018 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.237 0.763 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.209 0.791 41 H 0.094 0.906 42 H 0.089 0.911 43 H 0.126 0.874 44 H 0.036 0.964 45 H 0.063 0.937 46 H 0.040 0.960 47 H 0.049 0.951 48 H 0.150 0.850 49 H 0.151 0.849 50 H 0.170 0.830 51 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 19.371 12.321 5.234 23.547 hybrid contribution -1.381 1.540 0.343 2.097 sum 17.990 13.861 5.578 23.386 Atomic orbital electron populations 1.22202 0.93912 1.03321 1.03130 1.21074 0.96539 0.96487 0.95995 1.21835 1.01106 0.94915 1.02251 1.20373 0.92595 0.93604 1.01678 0.87873 1.20337 0.82208 0.90440 0.76528 1.90732 1.49387 1.52766 1.47843 1.46263 1.09690 1.10484 1.71362 1.22109 0.95539 0.81588 1.02837 1.22577 0.90224 0.98449 0.82449 1.86641 1.87801 1.31076 1.29129 1.23054 1.01187 0.91740 1.00740 1.21949 0.88391 0.91283 0.95270 1.44417 1.22728 1.17160 1.48230 1.19084 0.99210 1.01932 1.15092 0.90476 1.24803 0.98741 0.96798 1.00217 1.69801 1.31727 1.10220 1.45036 0.85994 0.81558 0.77555 0.80330 1.20542 1.21666 1.21705 1.21932 0.90052 0.93901 0.95075 1.20275 0.94910 1.00295 0.96324 1.21450 0.94933 0.96335 0.96862 1.22068 0.94611 1.02516 1.00583 1.22785 1.00467 0.93499 0.89486 1.67752 1.11250 1.14711 1.25767 1.22587 0.88669 0.93181 0.97411 0.92037 0.91457 0.91154 0.90273 0.92036 0.92360 0.92612 0.76344 0.90696 0.90216 0.79112 0.90567 0.91068 0.87403 0.96366 0.93660 0.96024 0.95146 0.84975 0.84886 0.82985 0.82955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.37 8.69 37.16 0.32 -1.05 16 2 C -0.08 -0.67 2.25 -90.62 -0.20 -0.87 16 3 C -0.14 -1.01 8.86 37.16 0.33 -0.68 16 4 C -0.06 -0.53 2.01 -92.93 -0.19 -0.72 16 5 H 0.10 0.69 7.93 -51.93 -0.41 0.27 16 6 C 0.52 6.23 6.79 -10.98 -0.07 6.16 16 7 O -0.53 -8.41 14.71 5.56 0.08 -8.33 16 8 N -0.72 -8.16 3.93 -60.29 -0.24 -8.40 16 9 C 0.10 1.44 4.74 -4.04 -0.02 1.42 16 10 C 0.10 1.71 0.91 -88.78 -0.08 1.63 16 11 O -0.54 -8.62 13.09 -35.23 -0.46 -9.08 16 12 C -0.13 -2.41 6.26 -24.58 -0.15 -2.56 16 13 C 0.16 3.75 5.88 -2.52 -0.01 3.73 16 14 N -0.60 -14.84 3.39 -170.07 -0.58 -15.42 16 15 C -0.23 -6.10 10.27 -15.06 -0.15 -6.26 16 16 H 0.08 2.01 7.83 -52.48 -0.41 1.60 16 17 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 18 N -0.92 -26.46 10.09 55.49 0.56 -25.90 16 19 Si 0.92 21.69 29.55 -169.99 -5.02 16.66 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 C 0.12 2.23 6.03 -3.06 -0.02 2.22 16 24 C -0.12 -1.15 3.03 -104.48 -0.32 -1.47 16 25 C -0.07 -0.58 9.81 -39.28 -0.39 -0.96 16 26 C -0.18 -1.40 10.11 -39.44 -0.40 -1.80 16 27 C 0.09 0.89 11.18 -17.54 -0.20 0.69 16 28 N -0.49 -5.96 10.36 -13.25 -0.14 -6.10 16 29 C 0.14 1.65 9.04 -17.55 -0.16 1.49 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.67 4.93 -51.93 -0.26 0.41 16 33 H 0.08 0.73 7.63 -51.93 -0.40 0.34 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.05 0.43 7.02 -51.93 -0.36 0.07 16 37 H 0.40 3.71 5.52 -40.82 -0.23 3.48 16 38 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 39 H 0.08 1.20 8.13 -51.93 -0.42 0.77 16 40 H 0.36 4.18 8.14 45.56 0.37 4.56 16 41 H 0.08 1.36 8.04 -51.93 -0.42 0.94 16 42 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.11 2.90 5.87 -51.93 -0.31 2.60 16 44 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 46 H 0.02 0.40 8.05 -51.93 -0.42 -0.02 16 47 H 0.03 0.58 7.82 -51.93 -0.41 0.17 16 48 H 0.13 0.77 8.00 -52.49 -0.42 0.35 16 49 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 50 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 51 H 0.15 1.88 7.28 -52.49 -0.38 1.50 16 LS Contribution 401.41 15.07 6.05 6.05 Total: -1.00 -33.82 401.41 -8.96 -42.78 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -7.40 Total: 7.12 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: -1.81 Total: 0.60 kcal Atomic # 7 Polarization: -55.42 SS G_CDS: -0.39 Total: -55.81 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: -0.38 Total: -17.40 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.82 -8.96 -42.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733495393.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.485 kcal (2) G-P(sol) polarization free energy of solvation -33.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds