Wall clock time and date at job start Wed Apr 1 2020 05:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46856 * 2 1 4 4 C 1.52996 * 109.46791 * 119.99621 * 2 1 3 5 5 H 1.09000 * 109.47264 * 305.54102 * 4 2 1 6 6 C 1.50699 * 109.47059 * 65.54716 * 4 2 1 7 7 O 1.21273 * 120.00534 * 106.77609 * 6 4 2 8 8 N 1.34783 * 119.99367 * 286.77009 * 6 4 2 9 9 C 1.46507 * 119.99388 * 176.43754 * 8 6 4 10 10 C 1.53004 * 109.46841 * 180.02562 * 9 8 6 11 11 O 1.42896 * 110.77962 * 298.21629 * 10 9 8 12 12 C 1.55155 * 110.72002 * 174.97591 * 10 9 8 13 13 C 1.54912 * 101.58064 * 206.13462 * 12 10 9 14 14 N 1.47433 * 104.83362 * 37.00828 * 13 12 10 15 15 C 1.36928 * 125.64517 * 155.89021 * 14 13 12 16 16 H 1.08006 * 119.99488 * 179.97438 * 15 14 13 17 17 C 1.38808 * 120.00605 * 359.97438 * 15 14 13 18 18 N 1.31620 * 119.99746 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00170 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47362 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47066 * 120.00545 * 19 17 15 22 22 H 1.48502 * 109.47369 * 239.99982 * 19 17 15 23 23 C 1.47022 * 108.69993 * 335.87352 * 14 13 12 24 24 C 1.50702 * 109.46718 * 185.54148 * 4 2 1 25 25 C 1.38672 * 120.41757 * 120.00602 * 24 4 2 26 26 C 1.38624 * 118.42042 * 180.02562 * 25 24 4 27 27 C 1.38229 * 119.16458 * 359.97438 * 26 25 24 28 28 N 1.31856 * 120.75816 * 0.02562 * 27 26 25 29 29 C 1.31890 * 121.72883 * 359.69910 * 28 27 26 30 30 H 1.08997 * 109.47503 * 307.26313 * 1 2 3 31 31 H 1.09002 * 109.47409 * 67.25897 * 1 2 3 32 32 H 1.08996 * 109.47094 * 187.26102 * 1 2 3 33 33 H 1.09000 * 109.46994 * 239.99574 * 2 1 3 34 34 H 1.09005 * 109.47060 * 299.99451 * 3 2 1 35 35 H 1.09000 * 109.47667 * 59.99986 * 3 2 1 36 36 H 1.09000 * 109.46980 * 179.97438 * 3 2 1 37 37 H 0.96992 * 120.00490 * 356.43808 * 8 6 4 38 38 H 1.08999 * 109.47185 * 60.00233 * 9 8 6 39 39 H 1.08996 * 109.47177 * 299.99762 * 9 8 6 40 40 H 0.96703 * 114.00347 * 61.78089 * 11 10 9 41 41 H 1.08999 * 111.00361 * 324.20872 * 12 10 9 42 42 H 1.09001 * 111.00517 * 88.06185 * 12 10 9 43 43 H 1.08999 * 110.36943 * 155.84453 * 13 12 10 44 44 H 1.09005 * 110.36598 * 278.17096 * 13 12 10 45 45 H 0.96999 * 119.99625 * 180.02562 * 18 17 15 46 46 H 1.08997 * 109.87846 * 241.64094 * 23 14 13 47 47 H 1.08997 * 109.88368 * 120.47616 * 23 14 13 48 48 H 1.08000 * 120.79257 * 0.02562 * 25 24 4 49 49 H 1.08002 * 120.41853 * 179.97438 * 26 25 24 50 50 H 1.07999 * 119.62276 * 179.97438 * 27 26 25 51 51 H 1.07997 * 119.61841 * 180.31306 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.5978 -0.2678 2.1365 6 6 1.6528 -2.1761 1.1826 7 8 2.4947 -3.0176 0.9507 8 7 0.3708 -2.5420 1.3808 9 6 -0.0201 -3.9468 1.2390 10 6 -1.5184 -4.0894 1.5145 11 8 -1.8278 -3.6934 2.8522 12 6 -1.9892 -5.5439 1.2498 13 6 -3.4856 -5.3296 0.9111 14 7 -3.5228 -4.0699 0.1461 15 6 -4.4969 -3.7056 -0.7446 16 1 -4.4331 -2.7567 -1.2564 17 6 -5.5665 -4.5558 -0.9896 18 7 -5.6445 -5.7120 -0.3655 19 14 -6.8957 -4.0585 -2.2042 20 1 -6.5773 -2.7216 -2.7667 21 1 -6.9599 -5.0550 -3.3033 22 1 -8.2066 -4.0039 -1.5085 23 6 -2.3409 -3.2694 0.4983 24 6 3.5407 -0.6034 1.3198 25 6 4.1464 0.0119 2.4048 26 6 5.5298 0.0980 2.4269 27 6 6.2544 -0.4291 1.3743 28 7 5.6444 -1.0075 0.3585 29 6 4.3307 -1.1120 0.3066 30 1 -0.3634 0.6222 0.8178 31 1 -0.3634 0.3973 -0.9478 32 1 -0.3633 -1.0194 0.1299 33 1 1.8933 -0.5139 -0.8900 34 1 1.6766 1.9563 -0.8901 35 1 1.6766 1.9564 0.8900 36 1 3.1299 1.4425 0.0005 37 1 -0.2928 -1.8753 1.6172 38 1 0.5399 -4.5534 1.9507 39 1 0.1961 -4.2836 0.2252 40 1 -1.6241 -2.7680 3.0456 41 1 -1.4559 -5.9795 0.4049 42 1 -1.8748 -6.1600 2.1417 43 1 -3.8587 -6.1538 0.3031 44 1 -4.0718 -5.2357 1.8253 45 1 -6.3917 -6.3063 -0.5370 46 1 -2.6524 -2.3267 0.9481 47 1 -1.7439 -3.0778 -0.3933 48 1 3.5546 0.4146 3.2135 49 1 6.0352 0.5710 3.2560 50 1 7.3325 -0.3658 1.3837 51 1 3.8668 -1.5971 -0.5396 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733495393.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:21 Heat of formation + Delta-G solvation = -49.177522 kcal Electronic energy + Delta-G solvation = -31602.001842 eV Core-core repulsion = 27501.022565 eV Total energy + Delta-G solvation = -4100.979277 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.93702 -40.75345 -39.82449 -37.25822 -36.83039 -35.41159 -33.98758 -33.43904 -32.30344 -31.44364 -30.09973 -28.53615 -27.93734 -27.25037 -25.24251 -24.57117 -23.51556 -22.41458 -21.74209 -21.38931 -20.94998 -18.98919 -18.75825 -18.08595 -17.68864 -17.10291 -16.91294 -16.75344 -16.43831 -16.11050 -15.84846 -15.59619 -15.40559 -15.14133 -14.82149 -14.58178 -14.41920 -14.26889 -13.93404 -13.91858 -13.83875 -13.64888 -13.39354 -13.29246 -12.99189 -12.92591 -12.83000 -12.79974 -12.39571 -12.11214 -12.03971 -11.98540 -11.84023 -11.76233 -11.69007 -11.59910 -11.02592 -10.88697 -10.75096 -10.57313 -10.34508 -10.13875 -9.85432 -8.90352 -7.77661 -5.22359 0.19214 0.40929 1.47459 1.48162 1.54983 1.58263 2.06762 2.48830 2.92607 3.14817 3.32532 3.39650 3.42600 3.60980 3.70723 3.72107 3.84251 3.91562 3.95279 4.03450 4.10180 4.12329 4.23216 4.34857 4.47753 4.49160 4.59505 4.64939 4.67448 4.72667 4.79790 4.82828 4.90125 4.94369 4.97898 4.99676 5.02297 5.09102 5.22469 5.22668 5.29555 5.31502 5.41129 5.42228 5.47227 5.60778 5.79651 5.82538 6.29037 6.41905 6.78769 7.08654 7.09386 7.16047 7.76766 8.40322 9.24711 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018594 B = 0.002481 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.501263 B =11284.335812 C =12069.204459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.077 4.077 3 C -0.137 4.137 4 C -0.050 4.050 5 H 0.137 0.863 6 C 0.519 3.481 7 O -0.573 6.573 8 N -0.713 5.713 9 C 0.118 3.882 10 C 0.126 3.874 11 O -0.553 6.553 12 C -0.122 4.122 13 C 0.160 3.840 14 N -0.622 5.622 15 C -0.235 4.235 16 H 0.085 0.915 17 C -0.069 4.069 18 N -0.950 5.950 19 Si 0.980 3.020 20 H -0.264 1.264 21 H -0.293 1.293 22 H -0.294 1.294 23 C 0.115 3.885 24 C -0.122 4.122 25 C -0.070 4.070 26 C -0.170 4.170 27 C 0.079 3.921 28 N -0.522 5.522 29 C 0.114 3.886 30 H 0.084 0.916 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.045 0.955 37 H 0.412 0.588 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.385 0.615 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.074 0.926 44 H -0.015 1.015 45 H 0.246 0.754 46 H 0.039 0.961 47 H 0.037 0.963 48 H 0.166 0.834 49 H 0.168 0.832 50 H 0.174 0.826 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.659 16.923 7.776 27.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.096 4.096 3 C -0.195 4.195 4 C -0.072 4.072 5 H 0.155 0.845 6 C 0.307 3.693 7 O -0.451 6.451 8 N -0.367 5.367 9 C -0.007 4.007 10 C 0.084 3.916 11 O -0.360 6.360 12 C -0.161 4.161 13 C 0.035 3.965 14 N -0.348 5.348 15 C -0.364 4.364 16 H 0.103 0.897 17 C -0.262 4.262 18 N -0.600 5.600 19 Si 0.808 3.192 20 H -0.188 1.188 21 H -0.220 1.220 22 H -0.221 1.221 23 C -0.011 4.011 24 C -0.124 4.124 25 C -0.096 4.096 26 C -0.189 4.189 27 C -0.078 4.078 28 N -0.232 5.232 29 C -0.043 4.043 30 H 0.103 0.897 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.064 0.936 37 H 0.252 0.748 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.234 0.766 41 H 0.102 0.898 42 H 0.102 0.898 43 H 0.092 0.908 44 H 0.003 0.997 45 H 0.056 0.944 46 H 0.057 0.943 47 H 0.055 0.945 48 H 0.183 0.817 49 H 0.185 0.815 50 H 0.191 0.809 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 20.373 15.311 6.866 26.394 hybrid contribution -1.614 0.673 -0.125 1.753 sum 18.759 15.984 6.742 25.551 Atomic orbital electron populations 1.22191 0.93583 1.02762 1.03867 1.21010 0.96626 0.97039 0.94926 1.21778 1.00433 0.93985 1.03267 1.20391 0.92272 0.91239 1.03276 0.84478 1.20908 0.81616 0.91558 0.75260 1.90726 1.50560 1.54258 1.49601 1.46116 1.10009 1.09562 1.71060 1.21745 0.93446 0.83289 1.02177 1.22190 0.91087 0.96073 0.82232 1.86606 1.88023 1.33132 1.28251 1.22905 0.97510 0.94012 1.01675 1.21644 0.91396 0.90385 0.93080 1.44698 1.23843 1.18278 1.47995 1.19484 0.99708 1.02016 1.15144 0.89733 1.25651 1.01167 0.97042 1.02320 1.70059 1.32094 1.11233 1.46603 0.84986 0.78516 0.77725 0.77957 1.18813 1.22021 1.22121 1.22131 0.88549 0.94213 0.96158 1.20354 0.95200 1.00449 0.96386 1.21880 0.95523 0.95364 0.96799 1.22459 0.94662 1.01155 1.00648 1.23268 1.01758 0.93301 0.89438 1.67666 1.11675 1.16205 1.27615 1.22419 0.89130 0.94709 0.98020 0.89719 0.91952 0.92626 0.92401 0.91915 0.90438 0.93592 0.74836 0.90695 0.91304 0.76608 0.89757 0.89758 0.90822 0.99654 0.94375 0.94344 0.94478 0.81655 0.81478 0.80892 0.85143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.30 8.69 71.98 0.63 -1.68 16 2 C -0.08 -1.12 2.25 -10.80 -0.02 -1.15 16 3 C -0.14 -1.60 8.86 71.98 0.64 -0.97 16 4 C -0.05 -0.77 2.01 -12.29 -0.02 -0.79 16 5 H 0.14 1.17 7.93 -2.39 -0.02 1.15 16 6 C 0.52 11.72 6.79 87.66 0.60 12.31 16 7 O -0.57 -18.09 14.71 -3.01 -0.04 -18.13 16 8 N -0.71 -14.55 3.93 -463.04 -1.82 -16.37 16 9 C 0.12 3.12 4.74 86.38 0.41 3.53 16 10 C 0.13 3.93 0.91 -9.60 -0.01 3.92 16 11 O -0.55 -16.27 13.09 -148.98 -1.95 -18.22 16 12 C -0.12 -4.56 6.26 31.99 0.20 -4.36 16 13 C 0.16 7.93 5.88 86.85 0.51 8.44 16 14 N -0.62 -30.97 3.39 -691.97 -2.35 -33.32 16 15 C -0.23 -12.78 10.27 84.03 0.86 -11.92 16 16 H 0.08 4.36 7.83 -2.91 -0.02 4.33 16 17 C -0.07 -3.89 5.49 84.86 0.47 -3.43 16 18 N -0.95 -56.54 10.09 21.65 0.22 -56.32 16 19 Si 0.98 45.04 29.55 68.60 2.03 47.07 16 20 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 21 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 22 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 23 C 0.11 4.23 6.03 86.73 0.52 4.76 16 24 C -0.12 -2.21 3.03 -19.77 -0.06 -2.27 16 25 C -0.07 -0.92 9.81 22.47 0.22 -0.70 16 26 C -0.17 -2.13 10.11 22.36 0.23 -1.91 16 27 C 0.08 1.37 11.18 84.69 0.95 2.32 16 28 N -0.52 -12.95 10.36 -195.84 -2.03 -14.98 16 29 C 0.11 2.77 9.04 84.67 0.77 3.53 16 30 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.06 0.93 8.14 -2.39 -0.02 0.92 16 32 H 0.05 0.93 4.93 -2.39 -0.01 0.92 16 33 H 0.06 1.09 7.63 -2.39 -0.02 1.07 16 34 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 35 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.04 0.64 7.02 -2.39 -0.02 0.62 16 37 H 0.41 6.34 5.52 -92.71 -0.51 5.82 16 38 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.07 2.01 8.13 -2.39 -0.02 1.99 16 40 H 0.38 7.55 8.14 -74.06 -0.60 6.94 16 41 H 0.08 2.99 8.04 -2.39 -0.02 2.97 16 42 H 0.08 2.91 8.14 -2.39 -0.02 2.89 16 43 H 0.07 4.16 5.87 -2.39 -0.01 4.15 16 44 H -0.01 -0.80 8.14 -2.38 -0.02 -0.82 16 45 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 46 H 0.04 1.31 8.05 -2.39 -0.02 1.29 16 47 H 0.04 1.34 7.82 -2.39 -0.02 1.32 16 48 H 0.17 1.03 8.00 -2.91 -0.02 1.00 16 49 H 0.17 0.91 8.06 -2.91 -0.02 0.89 16 50 H 0.17 2.02 8.06 -2.91 -0.02 2.00 16 51 H 0.13 3.54 7.28 -2.91 -0.02 3.52 16 Total: -1.00 -77.08 401.41 0.76 -76.32 By element: Atomic # 1 Polarization: 24.47 SS G_CDS: -0.17 Total: 24.30 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: 6.87 Total: 9.65 kcal Atomic # 7 Polarization: -115.01 SS G_CDS: -5.98 Total: -120.98 kcal Atomic # 8 Polarization: -34.36 SS G_CDS: -2.00 Total: -36.35 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -77.08 0.76 -76.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733495393.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.143 kcal (2) G-P(sol) polarization free energy of solvation -77.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds