Wall clock time and date at job start Wed Apr 1 2020 04:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47231 * 60.37480 * 3 2 1 5 5 C 1.53000 * 109.46972 * 179.97438 * 4 3 2 6 6 C 1.50704 * 109.46855 * 179.97438 * 5 4 3 7 7 O 1.21276 * 120.00232 * 0.02562 * 6 5 4 8 8 N 1.34773 * 119.99490 * 180.02562 * 6 5 4 9 9 C 1.47857 * 122.23557 * 0.02562 * 8 6 5 10 10 C 1.52716 * 111.06592 * 232.47613 * 9 8 6 11 11 C 1.53867 * 111.53212 * 311.48378 * 10 9 8 12 12 C 1.51106 * 107.32908 * 56.93834 * 11 10 9 13 13 H 1.09000 * 108.78494 * 51.52640 * 12 11 10 14 14 C 1.45721 * 122.23029 * 180.02562 * 8 6 5 15 15 H 1.08997 * 111.03110 * 240.43508 * 14 8 6 16 16 C 1.53411 * 116.41734 * 9.72972 * 14 8 6 17 17 C 1.55468 * 101.73818 * 152.97059 * 16 14 8 18 18 N 1.45467 * 119.09693 * 176.24074 * 12 11 10 19 19 C 1.46903 * 110.99727 * 272.09963 * 18 12 11 20 20 C 1.50705 * 109.46571 * 170.00074 * 19 18 12 21 21 O 1.21286 * 120.00534 * 0.02562 * 20 19 18 22 22 N 1.34783 * 119.99577 * 179.97438 * 20 19 18 23 23 C 1.37094 * 119.99743 * 180.02562 * 22 20 19 24 24 H 1.07996 * 120.00434 * 0.02562 * 23 22 20 25 25 C 1.38956 * 119.99884 * 180.02562 * 23 22 20 26 26 N 1.31406 * 119.99844 * 359.97438 * 25 23 22 27 27 Si 1.86798 * 120.00197 * 180.02562 * 25 23 22 28 28 H 1.48497 * 109.47387 * 59.99306 * 27 25 23 29 29 H 1.48491 * 109.47177 * 179.97438 * 27 25 23 30 30 H 1.48501 * 109.46662 * 299.99472 * 27 25 23 31 31 H 4.44650 * 5.63408 * 180.02562 * 4 1 2 32 32 H 1.08998 * 109.47268 * 300.37202 * 3 2 1 33 33 H 1.08999 * 109.46758 * 180.37451 * 3 2 1 34 34 H 1.09000 * 109.46702 * 59.99683 * 4 3 2 35 35 H 1.08999 * 109.47226 * 299.99685 * 4 3 2 36 36 H 1.08998 * 109.47089 * 59.99990 * 5 4 3 37 37 H 1.08999 * 109.47196 * 300.00081 * 5 4 3 38 38 H 1.08994 * 109.15608 * 112.06937 * 9 8 6 39 39 H 1.08998 * 109.11661 * 352.85775 * 9 8 6 40 40 H 1.09000 * 109.06444 * 190.95490 * 10 9 8 41 41 H 1.09003 * 109.06826 * 72.01620 * 10 9 8 42 42 H 1.08996 * 109.88646 * 297.48291 * 11 10 9 43 43 H 1.09000 * 109.94831 * 176.42858 * 11 10 9 44 44 H 1.08999 * 110.96874 * 271.08131 * 16 14 8 45 45 H 1.08992 * 110.97580 * 34.81582 * 16 14 8 46 46 H 1.08995 * 109.96923 * 96.67419 * 17 16 14 47 47 H 1.09006 * 109.96198 * 217.89523 * 17 16 14 48 48 H 1.08996 * 109.47153 * 289.99688 * 19 18 12 49 49 H 1.09001 * 109.47435 * 50.00399 * 19 18 12 50 50 H 0.96996 * 119.99964 * 0.02562 * 22 20 19 51 51 H 0.96999 * 120.00134 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1564 -0.7122 -1.2539 5 6 4.6864 -0.7109 -1.2542 6 6 5.1891 -1.4136 -2.4890 7 8 4.4012 -1.8700 -3.2901 8 7 6.5142 -1.5348 -2.7029 9 6 7.5178 -0.9977 -1.7592 10 6 8.5274 -0.1070 -2.4798 11 6 9.0773 -0.7864 -3.7461 12 6 7.8952 -1.1278 -4.6232 13 1 7.2831 -0.2349 -4.7504 14 6 7.0534 -2.2038 -3.8798 15 1 7.6648 -3.0607 -3.5968 16 6 6.0479 -2.5634 -4.9812 17 6 6.9508 -2.5607 -6.2468 18 7 8.1324 -1.7106 -5.9347 19 6 8.3131 -0.6649 -6.9505 20 6 8.7960 -1.2898 -8.2341 21 8 8.9718 -2.4882 -8.2967 22 7 9.0315 -0.5169 -9.3129 23 6 9.4703 -1.0853 -10.4807 24 1 9.6269 -2.1524 -10.5365 25 6 9.7136 -0.2884 -11.5928 26 7 9.5226 1.0099 -11.5252 27 14 10.3108 -1.0630 -13.1843 28 1 9.3082 -2.0489 -13.6618 29 1 10.4931 -0.0060 -14.2112 30 1 11.6055 -1.7499 -12.9450 31 1 -1.0499 0.0000 -0.0003 32 1 3.0096 -0.5188 0.8866 33 1 3.0089 1.0285 0.0067 34 1 2.7928 -0.1927 -2.1405 35 1 2.7936 -1.7400 -1.2606 36 1 5.0503 -1.2301 -0.3676 37 1 5.0489 0.3170 -1.2477 38 1 8.0449 -1.8270 -1.2875 39 1 7.0096 -0.4141 -0.9916 40 1 9.3550 0.1114 -1.8048 41 1 8.0416 0.8278 -2.7596 42 1 9.6133 -1.6962 -3.4757 43 1 9.7456 -0.1055 -4.2731 44 1 5.6186 -3.5506 -4.8103 45 1 5.2659 -1.8080 -5.0574 46 1 7.2725 -3.5764 -6.4768 47 1 6.4046 -2.1430 -7.0927 48 1 7.3626 -0.1614 -7.1267 49 1 9.0484 0.0592 -6.5998 50 1 8.8905 0.4415 -9.2630 51 1 9.6920 1.5662 -12.3015 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733601672.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:14 Heat of formation + Delta-G solvation = -8.520469 kcal Electronic energy + Delta-G solvation = -30712.866453 eV Core-core repulsion = 26613.650198 eV Total energy + Delta-G solvation = -4099.216255 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.04675 -39.01514 -37.82529 -36.11060 -35.93227 -33.84210 -33.14594 -32.73593 -31.38051 -30.94686 -29.08384 -28.34808 -26.46948 -25.17464 -24.18224 -22.91658 -22.12744 -21.38203 -20.11004 -19.44167 -18.95480 -18.33270 -17.79082 -16.66705 -16.45494 -16.33455 -15.91020 -15.54518 -15.05207 -14.88485 -14.63051 -14.50223 -14.31708 -14.05887 -13.80423 -13.72421 -13.64285 -13.34741 -12.95953 -12.70695 -12.70003 -12.40073 -12.12404 -12.00475 -11.83033 -11.55011 -11.48763 -11.36355 -11.16604 -11.15615 -11.05030 -10.92024 -10.69923 -10.56865 -10.54554 -10.43770 -10.41106 -10.17063 -9.52773 -9.43899 -8.77662 -8.40173 -7.91852 -7.83958 -6.37070 -3.77586 2.42794 2.44277 2.51624 2.71588 3.23229 3.28279 3.32941 3.89516 3.97188 4.00372 4.14267 4.24582 4.48246 4.55004 4.62592 4.66941 4.69967 4.76592 4.93850 5.03019 5.06111 5.11203 5.15701 5.19550 5.20717 5.27627 5.30637 5.35559 5.42206 5.48247 5.65430 5.68825 5.71082 5.73925 5.74461 5.84611 5.91482 5.93975 6.00022 6.12895 6.20048 6.21549 6.34875 6.42263 6.61344 7.19379 7.25099 7.29605 7.37511 7.59290 8.00556 8.11104 8.67447 9.23172 9.59954 10.12494 10.80849 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017077 B = 0.002012 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.256227 B =13912.017721 C =14589.787856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.187 4.187 3 C -0.013 4.013 4 C -0.100 4.100 5 C -0.140 4.140 6 C 0.517 3.483 7 O -0.530 6.530 8 N -0.607 5.607 9 C 0.109 3.891 10 C -0.132 4.132 11 C -0.103 4.103 12 C 0.058 3.942 13 H 0.041 0.959 14 C 0.135 3.865 15 H 0.091 0.909 16 C -0.128 4.128 17 C 0.052 3.948 18 N -0.493 5.493 19 C 0.043 3.957 20 C 0.446 3.554 21 O -0.575 6.575 22 N -0.567 5.567 23 C -0.297 4.297 24 H 0.102 0.898 25 C 0.021 3.979 26 N -0.904 5.904 27 Si 0.930 3.070 28 H -0.274 1.274 29 H -0.285 1.285 30 H -0.274 1.274 31 H 0.216 0.784 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.065 0.935 42 H 0.074 0.926 43 H 0.071 0.929 44 H 0.075 0.925 45 H 0.090 0.910 46 H 0.085 0.915 47 H 0.056 0.944 48 H 0.048 0.952 49 H 0.085 0.915 50 H 0.391 0.609 51 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.856 1.808 26.857 28.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.187 4.187 3 C -0.049 4.049 4 C -0.138 4.138 5 C -0.180 4.180 6 C 0.305 3.695 7 O -0.407 6.407 8 N -0.340 5.340 9 C -0.014 4.014 10 C -0.171 4.171 11 C -0.141 4.141 12 C -0.053 4.053 13 H 0.059 0.941 14 C 0.031 3.969 15 H 0.109 0.891 16 C -0.166 4.166 17 C -0.075 4.075 18 N -0.217 5.217 19 C -0.089 4.089 20 C 0.231 3.769 21 O -0.458 6.458 22 N -0.205 5.205 23 C -0.427 4.427 24 H 0.120 0.880 25 C -0.180 4.180 26 N -0.545 5.545 27 Si 0.758 3.242 28 H -0.200 1.200 29 H -0.210 1.210 30 H -0.199 1.199 31 H 0.233 0.767 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.089 0.911 39 H 0.102 0.898 40 H 0.099 0.901 41 H 0.084 0.916 42 H 0.092 0.908 43 H 0.090 0.910 44 H 0.094 0.906 45 H 0.109 0.891 46 H 0.104 0.896 47 H 0.074 0.926 48 H 0.066 0.934 49 H 0.104 0.896 50 H 0.224 0.776 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.685 0.601 26.227 27.634 hybrid contribution -0.522 0.986 -0.846 1.400 sum -9.207 1.587 25.381 27.046 Atomic orbital electron populations 1.24934 0.96042 1.01028 1.00722 1.23086 0.94580 1.00466 1.00564 1.18758 0.84933 1.02026 0.99226 1.21290 0.92877 1.02191 0.97436 1.21720 0.97381 1.01995 0.96905 1.20591 0.81343 0.79780 0.87764 1.90717 1.54785 1.48666 1.46535 1.48036 1.05346 1.56965 1.23687 1.21769 0.90246 0.97943 0.91437 1.21935 0.98631 0.98894 0.97663 1.21227 0.97215 1.01334 0.94361 1.22244 0.96254 0.96524 0.90243 0.94101 1.22022 0.95268 0.94836 0.84823 0.89071 1.22901 0.97242 1.03607 0.92888 1.23300 0.88688 0.99507 0.96036 1.62850 1.39657 1.19501 0.99713 1.22063 1.00435 0.93555 0.92817 1.19719 0.84728 0.87805 0.84635 1.90514 1.56566 1.14723 1.83992 1.41853 1.58970 1.09649 1.09984 1.19642 1.40667 0.94835 0.87539 0.88010 1.25246 0.97810 0.95283 0.99675 1.69603 1.49406 1.03871 1.31659 0.85924 0.79373 0.78297 0.80656 1.19966 1.21032 1.19923 0.76698 0.89520 0.89492 0.90656 0.90665 0.88740 0.88739 0.91090 0.89776 0.90063 0.91589 0.90765 0.91030 0.90587 0.89139 0.89632 0.92554 0.93385 0.89646 0.77590 0.91909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.66 19.25 29.55 0.57 -1.10 16 2 C -0.19 -1.59 13.34 -37.12 -0.50 -2.08 16 3 C -0.01 -0.08 5.70 -29.52 -0.17 -0.24 16 4 C -0.10 -0.75 4.46 -26.73 -0.12 -0.87 16 5 C -0.14 -0.88 4.12 -27.88 -0.11 -0.99 16 6 C 0.52 5.46 7.69 -10.99 -0.08 5.38 16 7 O -0.53 -7.66 12.82 5.56 0.07 -7.59 16 8 N -0.61 -5.98 2.91 -163.99 -0.48 -6.46 16 9 C 0.11 0.68 6.32 -3.44 -0.02 0.66 16 10 C -0.13 -0.92 5.93 -26.43 -0.16 -1.08 16 11 C -0.10 -1.08 5.98 -27.23 -0.16 -1.25 16 12 C 0.06 0.77 1.73 -68.09 -0.12 0.65 16 13 H 0.04 0.58 7.73 -51.93 -0.40 0.18 16 14 C 0.13 1.68 3.32 -66.79 -0.22 1.46 16 15 H 0.09 1.13 8.13 -51.93 -0.42 0.71 16 16 C -0.13 -1.86 5.00 -25.21 -0.13 -1.99 16 17 C 0.05 0.90 5.77 -1.42 -0.01 0.89 16 18 N -0.49 -8.50 4.83 -225.41 -1.09 -9.59 16 19 C 0.04 0.80 5.02 -4.97 -0.02 0.78 16 20 C 0.45 10.81 7.54 -10.98 -0.08 10.73 16 21 O -0.57 -15.86 15.21 5.55 0.08 -15.78 16 22 N -0.57 -14.70 5.29 -10.96 -0.06 -14.76 16 23 C -0.30 -8.43 9.68 -14.93 -0.14 -8.58 16 24 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 25 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 26 N -0.90 -24.96 13.05 55.50 0.72 -24.23 16 27 Si 0.93 21.41 29.55 -169.99 -5.02 16.39 16 28 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 29 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 30 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 31 H 0.22 1.01 7.80 -54.10 -0.42 0.59 16 32 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 35 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 36 H 0.09 0.38 8.01 -51.93 -0.42 -0.03 16 37 H 0.09 0.42 7.76 -51.93 -0.40 0.02 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.08 0.31 6.17 -51.93 -0.32 -0.01 16 40 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.79 8.11 -51.93 -0.42 0.36 16 43 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.09 1.45 6.21 -51.93 -0.32 1.13 16 46 H 0.09 1.58 8.14 -51.93 -0.42 1.15 16 47 H 0.06 1.04 7.42 -51.93 -0.39 0.66 16 48 H 0.05 0.85 7.90 -51.93 -0.41 0.44 16 49 H 0.09 1.44 8.07 -51.93 -0.42 1.02 16 50 H 0.39 9.71 7.90 -40.82 -0.32 9.39 16 51 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 409.36 15.07 6.17 6.17 Total: -1.00 -34.62 409.36 -9.58 -44.20 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -8.40 Total: 8.81 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: -1.58 Total: 2.83 kcal Atomic # 7 Polarization: -54.14 SS G_CDS: -0.90 Total: -55.04 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: 0.16 Total: -23.37 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -34.62 -9.58 -44.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733601672.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.679 kcal (2) G-P(sol) polarization free energy of solvation -34.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds