Wall clock time and date at job start Wed Apr 1 2020 04:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47231 * 60.37480 * 3 2 1 5 5 C 1.53000 * 109.46972 * 179.97438 * 4 3 2 6 6 C 1.50704 * 109.46855 * 179.97438 * 5 4 3 7 7 O 1.21276 * 120.00232 * 0.02562 * 6 5 4 8 8 N 1.34773 * 119.99490 * 180.02562 * 6 5 4 9 9 C 1.47857 * 122.23557 * 0.02562 * 8 6 5 10 10 C 1.52716 * 111.06592 * 232.47613 * 9 8 6 11 11 C 1.53867 * 111.53212 * 311.48378 * 10 9 8 12 12 C 1.51106 * 107.32908 * 56.93834 * 11 10 9 13 13 H 1.09000 * 108.78494 * 51.52640 * 12 11 10 14 14 C 1.45721 * 122.23029 * 180.02562 * 8 6 5 15 15 H 1.08997 * 111.03110 * 240.43508 * 14 8 6 16 16 C 1.53411 * 116.41734 * 9.72972 * 14 8 6 17 17 C 1.55468 * 101.73818 * 152.97059 * 16 14 8 18 18 N 1.45467 * 119.09693 * 176.24074 * 12 11 10 19 19 C 1.46903 * 110.99727 * 272.09963 * 18 12 11 20 20 C 1.50705 * 109.46571 * 170.00074 * 19 18 12 21 21 O 1.21286 * 120.00534 * 0.02562 * 20 19 18 22 22 N 1.34783 * 119.99577 * 179.97438 * 20 19 18 23 23 C 1.37094 * 119.99743 * 180.02562 * 22 20 19 24 24 H 1.07996 * 120.00434 * 0.02562 * 23 22 20 25 25 C 1.38956 * 119.99884 * 180.02562 * 23 22 20 26 26 N 1.31406 * 119.99844 * 359.97438 * 25 23 22 27 27 Si 1.86798 * 120.00197 * 180.02562 * 25 23 22 28 28 H 1.48497 * 109.47387 * 59.99306 * 27 25 23 29 29 H 1.48491 * 109.47177 * 179.97438 * 27 25 23 30 30 H 1.48501 * 109.46662 * 299.99472 * 27 25 23 31 31 H 4.44650 * 5.63408 * 180.02562 * 4 1 2 32 32 H 1.08998 * 109.47268 * 300.37202 * 3 2 1 33 33 H 1.08999 * 109.46758 * 180.37451 * 3 2 1 34 34 H 1.09000 * 109.46702 * 59.99683 * 4 3 2 35 35 H 1.08999 * 109.47226 * 299.99685 * 4 3 2 36 36 H 1.08998 * 109.47089 * 59.99990 * 5 4 3 37 37 H 1.08999 * 109.47196 * 300.00081 * 5 4 3 38 38 H 1.08994 * 109.15608 * 112.06937 * 9 8 6 39 39 H 1.08998 * 109.11661 * 352.85775 * 9 8 6 40 40 H 1.09000 * 109.06444 * 190.95490 * 10 9 8 41 41 H 1.09003 * 109.06826 * 72.01620 * 10 9 8 42 42 H 1.08996 * 109.88646 * 297.48291 * 11 10 9 43 43 H 1.09000 * 109.94831 * 176.42858 * 11 10 9 44 44 H 1.08999 * 110.96874 * 271.08131 * 16 14 8 45 45 H 1.08992 * 110.97580 * 34.81582 * 16 14 8 46 46 H 1.08995 * 109.96923 * 96.67419 * 17 16 14 47 47 H 1.09006 * 109.96198 * 217.89523 * 17 16 14 48 48 H 1.08996 * 109.47153 * 289.99688 * 19 18 12 49 49 H 1.09001 * 109.47435 * 50.00399 * 19 18 12 50 50 H 0.96996 * 119.99964 * 0.02562 * 22 20 19 51 51 H 0.96999 * 120.00134 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1564 -0.7122 -1.2539 5 6 4.6864 -0.7109 -1.2542 6 6 5.1891 -1.4136 -2.4890 7 8 4.4012 -1.8700 -3.2901 8 7 6.5142 -1.5348 -2.7029 9 6 7.5178 -0.9977 -1.7592 10 6 8.5274 -0.1070 -2.4798 11 6 9.0773 -0.7864 -3.7461 12 6 7.8952 -1.1278 -4.6232 13 1 7.2831 -0.2349 -4.7504 14 6 7.0534 -2.2038 -3.8798 15 1 7.6648 -3.0607 -3.5968 16 6 6.0479 -2.5634 -4.9812 17 6 6.9508 -2.5607 -6.2468 18 7 8.1324 -1.7106 -5.9347 19 6 8.3131 -0.6649 -6.9505 20 6 8.7960 -1.2898 -8.2341 21 8 8.9718 -2.4882 -8.2967 22 7 9.0315 -0.5169 -9.3129 23 6 9.4703 -1.0853 -10.4807 24 1 9.6269 -2.1524 -10.5365 25 6 9.7136 -0.2884 -11.5928 26 7 9.5226 1.0099 -11.5252 27 14 10.3108 -1.0630 -13.1843 28 1 9.3082 -2.0489 -13.6618 29 1 10.4931 -0.0060 -14.2112 30 1 11.6055 -1.7499 -12.9450 31 1 -1.0499 0.0000 -0.0003 32 1 3.0096 -0.5188 0.8866 33 1 3.0089 1.0285 0.0067 34 1 2.7928 -0.1927 -2.1405 35 1 2.7936 -1.7400 -1.2606 36 1 5.0503 -1.2301 -0.3676 37 1 5.0489 0.3170 -1.2477 38 1 8.0449 -1.8270 -1.2875 39 1 7.0096 -0.4141 -0.9916 40 1 9.3550 0.1114 -1.8048 41 1 8.0416 0.8278 -2.7596 42 1 9.6133 -1.6962 -3.4757 43 1 9.7456 -0.1055 -4.2731 44 1 5.6186 -3.5506 -4.8103 45 1 5.2659 -1.8080 -5.0574 46 1 7.2725 -3.5764 -6.4768 47 1 6.4046 -2.1430 -7.0927 48 1 7.3626 -0.1614 -7.1267 49 1 9.0484 0.0592 -6.5998 50 1 8.8905 0.4415 -9.2630 51 1 9.6920 1.5662 -12.3015 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733601672.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:13 Heat of formation + Delta-G solvation = -32.243392 kcal Electronic energy + Delta-G solvation = -30713.895157 eV Core-core repulsion = 26613.650198 eV Total energy + Delta-G solvation = -4100.244958 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.00291 -40.36019 -39.36042 -37.13934 -36.49883 -35.90646 -34.03678 -33.46699 -33.25120 -32.26498 -30.03057 -29.05755 -28.03112 -26.05834 -25.94352 -23.70801 -22.98625 -22.35256 -21.31673 -20.87253 -20.08813 -19.77584 -18.89861 -17.78699 -17.47384 -17.32393 -17.02635 -16.67756 -16.52296 -16.10827 -15.74957 -15.61264 -15.46613 -15.35393 -15.05564 -14.76301 -14.56597 -14.37061 -14.10691 -13.82618 -13.53218 -13.48332 -13.38019 -13.31468 -13.00101 -12.92379 -12.63552 -12.51210 -12.43975 -12.27579 -12.13627 -12.00490 -11.89850 -11.88816 -11.72083 -11.59076 -11.50073 -11.12971 -10.95320 -10.42884 -10.34706 -10.02370 -9.63302 -9.26058 -8.47301 -5.96238 1.38699 1.40076 1.51370 1.67334 1.80396 1.93685 1.99641 2.03494 2.28045 2.72417 3.16466 3.19833 3.42797 3.52461 3.57851 3.82962 3.89937 4.03781 4.11110 4.11993 4.16207 4.17176 4.24182 4.28733 4.33035 4.37923 4.45913 4.52583 4.58879 4.67291 4.69815 4.75635 4.80148 4.85141 4.87719 4.93780 5.02205 5.09143 5.20540 5.22158 5.22904 5.24931 5.35797 5.39416 5.43808 5.53864 5.80234 5.96888 6.12534 6.50926 6.59519 6.73408 7.11609 7.23721 7.54397 8.10575 8.70042 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017077 B = 0.002012 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.256227 B =13912.017721 C =14589.787856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.215 4.215 3 C -0.009 4.009 4 C -0.095 4.095 5 C -0.128 4.128 6 C 0.506 3.494 7 O -0.581 6.581 8 N -0.605 5.605 9 C 0.102 3.898 10 C -0.125 4.125 11 C -0.104 4.104 12 C 0.059 3.941 13 H 0.035 0.965 14 C 0.141 3.859 15 H 0.094 0.906 16 C -0.114 4.114 17 C 0.055 3.945 18 N -0.509 5.509 19 C 0.058 3.942 20 C 0.443 3.557 21 O -0.613 6.613 22 N -0.575 5.575 23 C -0.334 4.334 24 H 0.079 0.921 25 C -0.014 4.014 26 N -0.921 5.921 27 Si 0.994 3.006 28 H -0.273 1.273 29 H -0.269 1.269 30 H -0.271 1.271 31 H 0.236 0.764 32 H 0.110 0.890 33 H 0.107 0.893 34 H 0.047 0.953 35 H 0.052 0.948 36 H 0.129 0.871 37 H 0.124 0.876 38 H 0.086 0.914 39 H 0.122 0.878 40 H 0.110 0.890 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.064 0.936 44 H 0.072 0.928 45 H 0.076 0.924 46 H 0.064 0.936 47 H 0.033 0.967 48 H 0.059 0.941 49 H 0.109 0.891 50 H 0.395 0.605 51 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.996 3.349 29.731 30.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.215 4.215 3 C -0.045 4.045 4 C -0.133 4.133 5 C -0.167 4.167 6 C 0.297 3.703 7 O -0.461 6.461 8 N -0.338 5.338 9 C -0.018 4.018 10 C -0.163 4.163 11 C -0.142 4.142 12 C -0.051 4.051 13 H 0.053 0.947 14 C 0.036 3.964 15 H 0.112 0.888 16 C -0.152 4.152 17 C -0.073 4.073 18 N -0.233 5.233 19 C -0.074 4.074 20 C 0.230 3.770 21 O -0.499 6.499 22 N -0.213 5.213 23 C -0.463 4.463 24 H 0.097 0.903 25 C -0.213 4.213 26 N -0.562 5.562 27 Si 0.817 3.183 28 H -0.199 1.199 29 H -0.193 1.193 30 H -0.196 1.196 31 H 0.253 0.747 32 H 0.128 0.872 33 H 0.125 0.875 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.147 0.853 37 H 0.142 0.858 38 H 0.105 0.895 39 H 0.140 0.860 40 H 0.129 0.871 41 H 0.085 0.915 42 H 0.091 0.909 43 H 0.083 0.917 44 H 0.090 0.910 45 H 0.095 0.905 46 H 0.083 0.917 47 H 0.052 0.948 48 H 0.077 0.923 49 H 0.127 0.873 50 H 0.229 0.771 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.810 2.184 29.148 30.255 hybrid contribution -0.824 0.481 -1.738 1.983 sum -8.634 2.665 27.410 28.861 Atomic orbital electron populations 1.25701 0.97180 1.00930 1.00495 1.23913 0.95972 1.00717 1.00866 1.18868 0.83469 1.03220 0.98978 1.21176 0.94148 1.00679 0.97309 1.21749 0.95934 1.03429 0.95595 1.21463 0.81051 0.79209 0.88552 1.90703 1.56058 1.50805 1.48525 1.48175 1.06037 1.56445 1.23109 1.22132 0.89695 0.98881 0.91131 1.21929 0.99704 0.98450 0.96232 1.21308 0.95919 1.01553 0.95421 1.22388 0.97976 0.96190 0.88498 0.94674 1.21800 0.94147 0.94924 0.85533 0.88843 1.22675 0.96750 1.03003 0.92781 1.23170 0.89152 0.98302 0.96715 1.62826 1.39727 1.19597 1.01176 1.21881 1.01229 0.93788 0.90490 1.20681 0.83151 0.87375 0.85837 1.90481 1.57883 1.16575 1.84927 1.41916 1.59388 1.09893 1.10062 1.19626 1.43088 0.94232 0.89365 0.90349 1.26053 0.97179 0.95767 1.02322 1.69667 1.49089 1.04653 1.32777 0.84977 0.78730 0.77782 0.76766 1.19881 1.19350 1.19572 0.74715 0.87204 0.87504 0.93364 0.92927 0.85274 0.85762 0.89536 0.85973 0.87130 0.91466 0.90855 0.91733 0.90954 0.90511 0.91732 0.94848 0.92350 0.87300 0.77134 0.91286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -3.44 19.25 74.32 1.43 -2.01 16 2 C -0.21 -3.43 13.34 31.13 0.42 -3.01 16 3 C -0.01 -0.09 5.70 28.79 0.16 0.08 16 4 C -0.09 -1.30 4.46 30.59 0.14 -1.17 16 5 C -0.13 -1.14 4.12 29.85 0.12 -1.02 16 6 C 0.51 9.83 7.69 87.66 0.67 10.51 16 7 O -0.58 -17.07 12.82 -3.02 -0.04 -17.10 16 8 N -0.60 -10.45 2.91 -791.12 -2.30 -12.75 16 9 C 0.10 0.81 6.32 86.02 0.54 1.35 16 10 C -0.12 -1.21 5.93 30.79 0.18 -1.03 16 11 C -0.10 -1.95 5.98 30.27 0.18 -1.76 16 12 C 0.06 1.53 1.73 45.44 0.08 1.60 16 13 H 0.04 0.96 7.73 -2.39 -0.02 0.94 16 14 C 0.14 3.43 3.32 46.15 0.15 3.58 16 15 H 0.09 2.24 8.13 -2.39 -0.02 2.22 16 16 C -0.11 -3.46 5.00 31.58 0.16 -3.31 16 17 C 0.05 1.99 5.77 86.77 0.50 2.49 16 18 N -0.51 -17.93 4.83 -867.07 -4.19 -22.11 16 19 C 0.06 2.18 5.02 85.56 0.43 2.61 16 20 C 0.44 22.25 7.54 87.66 0.66 22.91 16 21 O -0.61 -35.46 15.21 -3.05 -0.05 -35.51 16 22 N -0.57 -30.76 5.29 -306.98 -1.62 -32.38 16 23 C -0.33 -19.53 9.68 84.04 0.81 -18.71 16 24 H 0.08 4.87 7.16 -2.91 -0.02 4.85 16 25 C -0.01 -0.74 5.50 84.93 0.47 -0.28 16 26 N -0.92 -50.77 13.05 21.66 0.28 -50.49 16 27 Si 0.99 43.96 29.55 68.60 2.03 45.98 16 28 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 29 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 30 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 31 H 0.24 2.04 7.80 -4.42 -0.03 2.01 16 32 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.05 0.91 8.10 -2.39 -0.02 0.89 16 35 H 0.05 0.94 8.10 -2.39 -0.02 0.93 16 36 H 0.13 0.34 8.01 -2.39 -0.02 0.32 16 37 H 0.12 0.45 7.76 -2.39 -0.02 0.43 16 38 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.12 0.11 6.17 -2.39 -0.01 0.09 16 40 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.07 1.39 8.11 -2.39 -0.02 1.37 16 43 H 0.06 1.30 8.14 -2.39 -0.02 1.29 16 44 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 45 H 0.08 2.59 6.21 -2.39 -0.01 2.58 16 46 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 47 H 0.03 1.33 7.42 -2.38 -0.02 1.31 16 48 H 0.06 2.10 7.90 -2.39 -0.02 2.08 16 49 H 0.11 3.61 8.07 -2.39 -0.02 3.59 16 50 H 0.40 20.09 7.90 -92.71 -0.73 19.36 16 51 H 0.28 14.33 8.31 -92.71 -0.77 13.56 16 Total: -1.00 -80.45 409.36 1.41 -79.04 By element: Atomic # 1 Polarization: 32.30 SS G_CDS: 0.19 Total: 32.49 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: 7.11 Total: 12.84 kcal Atomic # 7 Polarization: -109.90 SS G_CDS: -7.83 Total: -117.73 kcal Atomic # 8 Polarization: -52.53 SS G_CDS: -0.09 Total: -52.62 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.98 kcal Total: -80.45 1.41 -79.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733601672.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.795 kcal (2) G-P(sol) polarization free energy of solvation -80.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds