Wall clock time and date at job start Wed Apr 1 2020 04:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53010 * 109.46839 * 322.73966 * 3 2 1 5 5 C 1.53001 * 109.46686 * 179.97438 * 4 3 2 6 6 C 1.50708 * 109.46786 * 179.97438 * 5 4 3 7 7 O 1.21281 * 119.99867 * 0.02562 * 6 5 4 8 8 N 1.34776 * 119.99675 * 180.02562 * 6 5 4 9 9 C 1.45663 * 117.38494 * 359.97438 * 8 6 5 10 10 C 1.53283 * 108.70276 * 154.20592 * 9 8 6 11 11 C 1.52744 * 107.78353 * 58.24155 * 10 9 8 12 12 C 1.51426 * 111.42791 * 294.76709 * 11 10 9 13 13 H 1.09007 * 107.40139 * 275.25283 * 12 11 10 14 14 C 1.43824 * 117.37938 * 180.02562 * 8 6 5 15 15 H 1.09004 * 107.56563 * 297.47250 * 14 8 6 16 16 C 1.54174 * 110.88383 * 54.42665 * 14 8 6 17 17 C 1.54269 * 103.98786 * 146.34011 * 16 14 8 18 18 N 1.47680 * 109.90243 * 158.08414 * 12 11 10 19 19 C 1.46903 * 111.00185 * 93.57013 * 18 12 11 20 20 C 1.50699 * 109.46994 * 189.31204 * 19 18 12 21 21 O 1.21293 * 119.99999 * 0.02562 * 20 19 18 22 22 N 1.34777 * 119.99772 * 179.97438 * 20 19 18 23 23 C 1.37092 * 120.00123 * 179.97438 * 22 20 19 24 24 H 1.08002 * 120.00160 * 0.02562 * 23 22 20 25 25 C 1.38951 * 120.00419 * 180.02562 * 23 22 20 26 26 N 1.31414 * 119.99798 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 120.00536 * 179.97438 * 25 23 22 28 28 H 1.48490 * 109.47339 * 180.02562 * 27 25 23 29 29 H 1.48493 * 109.47239 * 300.00506 * 27 25 23 30 30 H 1.48504 * 109.46636 * 60.00065 * 27 25 23 31 31 H 4.44643 * 5.63318 * 180.02562 * 4 1 2 32 32 H 1.09000 * 109.47011 * 202.74295 * 3 2 1 33 33 H 1.08999 * 109.47234 * 82.73495 * 3 2 1 34 34 H 1.09000 * 109.47051 * 60.00353 * 4 3 2 35 35 H 1.08999 * 109.46822 * 299.99780 * 4 3 2 36 36 H 1.09000 * 109.46971 * 60.00446 * 5 4 3 37 37 H 1.08990 * 109.47543 * 300.00149 * 5 4 3 38 38 H 1.09007 * 109.60006 * 273.97456 * 9 8 6 39 39 H 1.09003 * 109.59877 * 34.27893 * 9 8 6 40 40 H 1.08996 * 109.79898 * 177.81313 * 10 9 8 41 41 H 1.08997 * 109.79774 * 298.61656 * 10 9 8 42 42 H 1.08997 * 109.08778 * 55.24896 * 11 10 9 43 43 H 1.09004 * 109.08387 * 174.32070 * 11 10 9 44 44 H 1.09002 * 110.52218 * 27.71620 * 16 14 8 45 45 H 1.09001 * 110.53054 * 264.96848 * 16 14 8 46 46 H 1.08998 * 110.26396 * 212.22225 * 17 16 14 47 47 H 1.09001 * 110.34247 * 90.20901 * 17 16 14 48 48 H 1.08997 * 109.46851 * 69.30965 * 19 18 12 49 49 H 1.09007 * 109.46610 * 309.31309 * 19 18 12 50 50 H 0.97000 * 119.99732 * 0.02562 * 22 20 19 51 51 H 0.96996 * 120.00340 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1565 -1.1473 0.8734 5 6 4.6865 -1.1470 0.8729 6 6 5.1893 -2.2772 1.7337 7 8 4.4015 -3.0110 2.2921 8 7 6.5145 -2.4726 1.8828 9 6 7.4091 -1.5582 1.1862 10 6 8.7425 -1.5051 1.9404 11 6 9.3023 -2.9251 1.9988 12 6 8.4183 -3.8346 2.8261 13 1 8.7083 -3.7101 3.8695 14 6 6.9319 -3.5679 2.7162 15 1 6.5683 -3.3710 3.7248 16 6 6.2900 -4.8895 2.2492 17 6 7.3657 -5.9535 2.5505 18 7 8.6571 -5.2433 2.4527 19 6 9.6639 -5.8568 3.3291 20 6 10.0483 -7.2080 2.7836 21 8 9.5344 -7.6193 1.7647 22 7 10.9638 -7.9590 3.4273 23 6 11.3131 -9.1885 2.9314 24 1 10.8550 -9.5551 2.0246 25 6 12.2566 -9.9630 3.5952 26 7 12.8137 -9.5172 4.6988 27 14 12.7320 -11.6385 2.9200 28 1 13.7495 -12.2588 3.8060 29 1 11.5299 -12.5084 2.8626 30 1 13.2942 -11.4804 1.5546 31 1 -1.0497 -0.0004 0.0000 32 1 3.0089 0.9486 0.3973 33 1 3.0094 -0.1291 -1.0194 34 1 2.7936 -2.0952 0.4761 35 1 2.7931 -1.0175 1.8928 36 1 5.0498 -0.1991 1.2699 37 1 5.0496 -1.2769 -0.1465 38 1 7.5777 -1.9148 0.1700 39 1 6.9640 -0.5637 1.1553 40 1 9.4398 -0.8549 1.4122 41 1 8.5805 -1.1295 2.9507 42 1 9.3733 -3.3222 0.9862 43 1 10.2979 -2.8978 2.4416 44 1 6.0762 -4.8540 1.1810 45 1 5.3811 -5.0940 2.8153 46 1 7.3189 -6.7564 1.8149 47 1 7.2313 -6.3543 3.5552 48 1 9.2508 -5.9735 4.3310 49 1 10.5461 -5.2179 3.3719 50 1 11.3750 -7.6299 4.2419 51 1 13.4720 -10.0580 5.1625 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733601681.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:17 Heat of formation + Delta-G solvation = -13.949618 kcal Electronic energy + Delta-G solvation = -30592.509255 eV Core-core repulsion = 26493.057574 eV Total energy + Delta-G solvation = -4099.451681 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.12177 -39.07904 -37.82179 -36.12338 -35.92607 -33.87512 -33.40387 -32.74348 -31.42486 -30.99961 -29.31142 -28.31476 -26.50097 -25.08964 -24.26523 -23.03907 -22.31567 -21.33246 -20.14311 -19.23682 -18.64322 -18.21321 -17.86540 -17.30940 -16.50487 -16.18018 -15.95253 -15.79848 -15.13384 -14.77904 -14.65309 -14.38704 -14.27629 -13.99873 -13.91444 -13.79638 -13.72401 -13.22105 -13.06668 -12.70545 -12.57951 -12.36891 -12.30973 -11.98762 -11.76506 -11.56505 -11.51691 -11.35928 -11.23662 -11.08488 -11.03251 -10.84278 -10.67738 -10.55552 -10.48504 -10.42607 -10.42039 -10.19235 -9.78067 -9.46290 -8.77127 -8.43647 -7.96124 -7.89144 -6.39422 -3.80093 2.44388 2.46905 2.52404 2.81405 3.21606 3.26993 3.31469 3.91140 3.94676 3.99432 4.14688 4.24809 4.46508 4.58746 4.59101 4.69508 4.72825 4.79474 4.87182 4.99656 5.06931 5.09852 5.17078 5.22925 5.25247 5.28931 5.31684 5.36639 5.42717 5.48735 5.63960 5.69077 5.70343 5.75295 5.76537 5.87513 5.91935 5.94231 5.98563 6.14459 6.20427 6.24720 6.32834 6.50870 6.59765 7.14408 7.25418 7.27655 7.30327 7.57084 8.03487 8.08443 8.64615 9.20659 9.57047 10.09381 10.78368 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.024354 B = 0.001877 C = 0.001794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.413454 B =14912.508479 C =15601.726454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.186 4.186 3 C -0.013 4.013 4 C -0.100 4.100 5 C -0.139 4.139 6 C 0.504 3.496 7 O -0.533 6.533 8 N -0.593 5.593 9 C 0.108 3.892 10 C -0.128 4.128 11 C -0.110 4.110 12 C 0.075 3.925 13 H 0.050 0.950 14 C 0.153 3.847 15 H 0.064 0.936 16 C -0.124 4.124 17 C 0.048 3.952 18 N -0.494 5.494 19 C 0.041 3.959 20 C 0.446 3.554 21 O -0.576 6.576 22 N -0.566 5.566 23 C -0.298 4.298 24 H 0.102 0.898 25 C 0.022 3.978 26 N -0.903 5.903 27 Si 0.930 3.070 28 H -0.285 1.285 29 H -0.274 1.274 30 H -0.274 1.274 31 H 0.216 0.784 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.068 0.932 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.068 0.932 42 H 0.080 0.920 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.083 0.917 46 H 0.098 0.902 47 H 0.040 0.960 48 H 0.049 0.951 49 H 0.087 0.913 50 H 0.391 0.609 51 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.693 23.562 -4.974 27.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.186 4.186 3 C -0.050 4.050 4 C -0.138 4.138 5 C -0.179 4.179 6 C 0.292 3.708 7 O -0.410 6.410 8 N -0.326 5.326 9 C -0.015 4.015 10 C -0.167 4.167 11 C -0.148 4.148 12 C -0.034 4.034 13 H 0.068 0.932 14 C 0.048 3.952 15 H 0.082 0.918 16 C -0.164 4.164 17 C -0.080 4.080 18 N -0.218 5.218 19 C -0.091 4.091 20 C 0.231 3.769 21 O -0.460 6.460 22 N -0.203 5.203 23 C -0.428 4.428 24 H 0.120 0.880 25 C -0.179 4.179 26 N -0.545 5.545 27 Si 0.758 3.242 28 H -0.210 1.210 29 H -0.200 1.200 30 H -0.199 1.199 31 H 0.233 0.767 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.086 0.914 39 H 0.098 0.902 40 H 0.101 0.899 41 H 0.087 0.913 42 H 0.099 0.901 43 H 0.086 0.914 44 H 0.089 0.911 45 H 0.101 0.899 46 H 0.117 0.883 47 H 0.058 0.942 48 H 0.067 0.933 49 H 0.105 0.895 50 H 0.224 0.776 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.042 22.731 -5.718 27.324 hybrid contribution 0.297 -0.624 1.156 1.346 sum -13.745 22.108 -4.563 26.429 Atomic orbital electron populations 1.24924 0.96036 1.00867 1.01034 1.23100 0.94591 1.00477 1.00424 1.18768 0.84895 0.99889 1.01440 1.21295 0.92978 0.98585 1.00949 1.21735 0.97303 0.97980 1.00875 1.20732 0.81983 0.86127 0.81963 1.90709 1.55036 1.47302 1.47925 1.47053 1.06151 1.30212 1.49184 1.21626 0.90920 0.92866 0.96078 1.21770 0.95998 0.97821 1.01069 1.21130 0.98371 0.93021 1.02266 1.21503 0.92622 0.90874 0.98441 0.93160 1.20344 0.94270 0.86917 0.93684 0.91823 1.22776 0.98458 0.92811 1.02305 1.22918 0.86819 0.97089 1.01159 1.63534 1.07861 0.99544 1.50907 1.22086 0.96301 0.96530 0.94151 1.19679 0.83947 0.86426 0.86839 1.90510 1.56506 1.73215 1.25735 1.41841 1.36540 1.16845 1.25051 1.19643 1.20858 0.92747 1.09538 0.88007 1.25243 0.96703 1.00071 0.95906 1.69603 1.28777 1.38873 1.17201 0.85923 0.78262 0.81496 0.78567 1.21008 1.19962 1.19920 0.76720 0.89518 0.89427 0.90636 0.90755 0.88679 0.88562 0.91352 0.90217 0.89887 0.91305 0.90138 0.91368 0.91085 0.89888 0.88348 0.94174 0.93260 0.89453 0.77557 0.91881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.66 19.25 29.55 0.57 -1.09 16 2 C -0.19 -1.57 13.34 -37.12 -0.50 -2.07 16 3 C -0.01 -0.08 5.70 -29.51 -0.17 -0.25 16 4 C -0.10 -0.76 4.46 -26.73 -0.12 -0.88 16 5 C -0.14 -0.90 4.20 -27.88 -0.12 -1.02 16 6 C 0.50 5.44 7.21 -10.98 -0.08 5.36 16 7 O -0.53 -7.78 14.08 5.56 0.08 -7.70 16 8 N -0.59 -6.14 2.99 -168.74 -0.50 -6.65 16 9 C 0.11 0.76 5.73 -4.35 -0.02 0.74 16 10 C -0.13 -0.94 6.08 -26.72 -0.16 -1.10 16 11 C -0.11 -1.18 5.48 -27.66 -0.15 -1.33 16 12 C 0.07 0.97 2.57 -68.88 -0.18 0.79 16 13 H 0.05 0.63 7.61 -51.93 -0.40 0.23 16 14 C 0.15 1.94 2.72 -69.54 -0.19 1.75 16 15 H 0.06 0.85 8.12 -51.93 -0.42 0.42 16 16 C -0.12 -1.83 5.19 -25.45 -0.13 -1.96 16 17 C 0.05 0.81 5.84 -2.72 -0.02 0.80 16 18 N -0.49 -8.30 4.49 -227.86 -1.02 -9.32 16 19 C 0.04 0.73 5.07 -4.97 -0.03 0.71 16 20 C 0.45 10.59 7.58 -10.99 -0.08 10.50 16 21 O -0.58 -15.66 14.55 5.55 0.08 -15.58 16 22 N -0.57 -14.41 5.29 -10.96 -0.06 -14.47 16 23 C -0.30 -8.36 9.68 -14.94 -0.14 -8.51 16 24 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 25 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 26 N -0.90 -24.64 13.05 55.50 0.72 -23.92 16 27 Si 0.93 21.20 29.55 -169.99 -5.02 16.18 16 28 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 29 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 30 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 31 H 0.22 0.99 7.80 -54.10 -0.42 0.57 16 32 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 35 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 36 H 0.09 0.39 7.24 -51.93 -0.38 0.02 16 37 H 0.10 0.46 8.04 -51.93 -0.42 0.05 16 38 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 39 H 0.08 0.34 6.29 -51.93 -0.33 0.02 16 40 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.08 1.00 8.08 -51.93 -0.42 0.58 16 43 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.07 1.09 8.02 -51.93 -0.42 0.68 16 45 H 0.08 1.25 7.44 -51.93 -0.39 0.87 16 46 H 0.10 1.95 7.20 -51.93 -0.37 1.57 16 47 H 0.04 0.68 7.66 -51.93 -0.40 0.28 16 48 H 0.05 0.82 7.83 -51.93 -0.41 0.41 16 49 H 0.09 1.41 8.09 -51.93 -0.42 0.99 16 50 H 0.39 9.53 7.90 -40.82 -0.32 9.21 16 51 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 408.74 15.07 6.16 6.16 Total: -1.00 -34.18 408.74 -9.57 -43.75 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: -8.39 Total: 8.59 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: -1.61 Total: 2.95 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: -0.86 Total: -54.36 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: 0.16 Total: -23.28 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -34.18 -9.57 -43.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733601681.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.799 kcal (2) G-P(sol) polarization free energy of solvation -34.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds