Wall clock time and date at job start Wed Apr 1 2020 04:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53010 * 109.46839 * 322.73966 * 3 2 1 5 5 C 1.53001 * 109.46686 * 179.97438 * 4 3 2 6 6 C 1.50708 * 109.46786 * 179.97438 * 5 4 3 7 7 O 1.21281 * 119.99867 * 0.02562 * 6 5 4 8 8 N 1.34776 * 119.99675 * 180.02562 * 6 5 4 9 9 C 1.45663 * 117.38494 * 359.97438 * 8 6 5 10 10 C 1.53283 * 108.70276 * 154.20592 * 9 8 6 11 11 C 1.52744 * 107.78353 * 58.24155 * 10 9 8 12 12 C 1.51426 * 111.42791 * 294.76709 * 11 10 9 13 13 H 1.09007 * 107.40139 * 275.25283 * 12 11 10 14 14 C 1.43824 * 117.37938 * 180.02562 * 8 6 5 15 15 H 1.09004 * 107.56563 * 297.47250 * 14 8 6 16 16 C 1.54174 * 110.88383 * 54.42665 * 14 8 6 17 17 C 1.54269 * 103.98786 * 146.34011 * 16 14 8 18 18 N 1.47680 * 109.90243 * 158.08414 * 12 11 10 19 19 C 1.46903 * 111.00185 * 93.57013 * 18 12 11 20 20 C 1.50699 * 109.46994 * 189.31204 * 19 18 12 21 21 O 1.21293 * 119.99999 * 0.02562 * 20 19 18 22 22 N 1.34777 * 119.99772 * 179.97438 * 20 19 18 23 23 C 1.37092 * 120.00123 * 179.97438 * 22 20 19 24 24 H 1.08002 * 120.00160 * 0.02562 * 23 22 20 25 25 C 1.38951 * 120.00419 * 180.02562 * 23 22 20 26 26 N 1.31414 * 119.99798 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 120.00536 * 179.97438 * 25 23 22 28 28 H 1.48490 * 109.47339 * 180.02562 * 27 25 23 29 29 H 1.48493 * 109.47239 * 300.00506 * 27 25 23 30 30 H 1.48504 * 109.46636 * 60.00065 * 27 25 23 31 31 H 4.44643 * 5.63318 * 180.02562 * 4 1 2 32 32 H 1.09000 * 109.47011 * 202.74295 * 3 2 1 33 33 H 1.08999 * 109.47234 * 82.73495 * 3 2 1 34 34 H 1.09000 * 109.47051 * 60.00353 * 4 3 2 35 35 H 1.08999 * 109.46822 * 299.99780 * 4 3 2 36 36 H 1.09000 * 109.46971 * 60.00446 * 5 4 3 37 37 H 1.08990 * 109.47543 * 300.00149 * 5 4 3 38 38 H 1.09007 * 109.60006 * 273.97456 * 9 8 6 39 39 H 1.09003 * 109.59877 * 34.27893 * 9 8 6 40 40 H 1.08996 * 109.79898 * 177.81313 * 10 9 8 41 41 H 1.08997 * 109.79774 * 298.61656 * 10 9 8 42 42 H 1.08997 * 109.08778 * 55.24896 * 11 10 9 43 43 H 1.09004 * 109.08387 * 174.32070 * 11 10 9 44 44 H 1.09002 * 110.52218 * 27.71620 * 16 14 8 45 45 H 1.09001 * 110.53054 * 264.96848 * 16 14 8 46 46 H 1.08998 * 110.26396 * 212.22225 * 17 16 14 47 47 H 1.09001 * 110.34247 * 90.20901 * 17 16 14 48 48 H 1.08997 * 109.46851 * 69.30965 * 19 18 12 49 49 H 1.09007 * 109.46610 * 309.31309 * 19 18 12 50 50 H 0.97000 * 119.99732 * 0.02562 * 22 20 19 51 51 H 0.96996 * 120.00340 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1565 -1.1473 0.8734 5 6 4.6865 -1.1470 0.8729 6 6 5.1893 -2.2772 1.7337 7 8 4.4015 -3.0110 2.2921 8 7 6.5145 -2.4726 1.8828 9 6 7.4091 -1.5582 1.1862 10 6 8.7425 -1.5051 1.9404 11 6 9.3023 -2.9251 1.9988 12 6 8.4183 -3.8346 2.8261 13 1 8.7083 -3.7101 3.8695 14 6 6.9319 -3.5679 2.7162 15 1 6.5683 -3.3710 3.7248 16 6 6.2900 -4.8895 2.2492 17 6 7.3657 -5.9535 2.5505 18 7 8.6571 -5.2433 2.4527 19 6 9.6639 -5.8568 3.3291 20 6 10.0483 -7.2080 2.7836 21 8 9.5344 -7.6193 1.7647 22 7 10.9638 -7.9590 3.4273 23 6 11.3131 -9.1885 2.9314 24 1 10.8550 -9.5551 2.0246 25 6 12.2566 -9.9630 3.5952 26 7 12.8137 -9.5172 4.6988 27 14 12.7320 -11.6385 2.9200 28 1 13.7495 -12.2588 3.8060 29 1 11.5299 -12.5084 2.8626 30 1 13.2942 -11.4804 1.5546 31 1 -1.0497 -0.0004 0.0000 32 1 3.0089 0.9486 0.3973 33 1 3.0094 -0.1291 -1.0194 34 1 2.7936 -2.0952 0.4761 35 1 2.7931 -1.0175 1.8928 36 1 5.0498 -0.1991 1.2699 37 1 5.0496 -1.2769 -0.1465 38 1 7.5777 -1.9148 0.1700 39 1 6.9640 -0.5637 1.1553 40 1 9.4398 -0.8549 1.4122 41 1 8.5805 -1.1295 2.9507 42 1 9.3733 -3.3222 0.9862 43 1 10.2979 -2.8978 2.4416 44 1 6.0762 -4.8540 1.1810 45 1 5.3811 -5.0940 2.8153 46 1 7.3189 -6.7564 1.8149 47 1 7.2313 -6.3543 3.5552 48 1 9.2508 -5.9735 4.3310 49 1 10.5461 -5.2179 3.3719 50 1 11.3750 -7.6299 4.2419 51 1 13.4720 -10.0580 5.1625 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733601681.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:16 Heat of formation + Delta-G solvation = -37.154736 kcal Electronic energy + Delta-G solvation = -30593.515504 eV Core-core repulsion = 26493.057574 eV Total energy + Delta-G solvation = -4100.457930 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.06105 -40.43026 -39.34998 -37.14823 -36.50454 -35.90089 -34.31673 -33.48331 -33.25338 -32.30007 -30.31830 -29.04279 -28.00670 -26.03724 -25.91543 -23.83118 -23.10506 -22.58310 -21.07143 -20.95906 -19.91615 -19.33789 -18.89680 -18.16361 -17.71379 -17.25077 -17.08456 -16.89874 -16.50580 -16.14413 -15.77661 -15.63408 -15.52291 -15.32215 -14.98482 -14.71297 -14.61835 -14.22207 -14.08497 -13.95536 -13.61737 -13.51062 -13.34830 -13.24527 -13.00864 -12.83902 -12.71478 -12.47097 -12.42929 -12.35178 -12.19104 -12.11677 -11.96479 -11.78194 -11.57803 -11.52322 -11.48378 -11.12819 -10.94412 -10.64450 -10.32366 -10.01243 -9.61793 -9.31345 -8.46601 -5.95282 1.39048 1.40762 1.51653 1.66158 1.83917 1.94519 2.04965 2.06309 2.27883 2.68429 3.19209 3.24343 3.40016 3.54825 3.63034 3.70873 3.87683 3.99450 4.05527 4.08907 4.15418 4.19109 4.23668 4.32199 4.33064 4.42072 4.48286 4.54146 4.55714 4.66602 4.71097 4.75737 4.82419 4.87776 4.94667 4.95816 4.97484 5.08247 5.17523 5.19810 5.23493 5.23983 5.36448 5.39974 5.43105 5.71122 5.82919 5.97243 6.09077 6.41623 6.60724 6.74190 7.12887 7.23894 7.55995 8.12427 8.70583 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.024354 B = 0.001877 C = 0.001794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.413454 B =14912.508479 C =15601.726454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.215 4.215 3 C -0.010 4.010 4 C -0.095 4.095 5 C -0.128 4.128 6 C 0.495 3.505 7 O -0.582 6.582 8 N -0.593 5.593 9 C 0.100 3.900 10 C -0.119 4.119 11 C -0.109 4.109 12 C 0.076 3.924 13 H 0.062 0.938 14 C 0.161 3.839 15 H 0.059 0.941 16 C -0.112 4.112 17 C 0.051 3.949 18 N -0.511 5.511 19 C 0.054 3.946 20 C 0.442 3.558 21 O -0.616 6.616 22 N -0.574 5.574 23 C -0.334 4.334 24 H 0.077 0.923 25 C -0.011 4.011 26 N -0.920 5.920 27 Si 0.992 3.008 28 H -0.269 1.269 29 H -0.274 1.274 30 H -0.272 1.272 31 H 0.237 0.763 32 H 0.111 0.889 33 H 0.106 0.894 34 H 0.047 0.953 35 H 0.053 0.947 36 H 0.132 0.868 37 H 0.122 0.878 38 H 0.072 0.928 39 H 0.120 0.880 40 H 0.110 0.890 41 H 0.075 0.925 42 H 0.060 0.940 43 H 0.072 0.928 44 H 0.059 0.941 45 H 0.074 0.926 46 H 0.060 0.940 47 H 0.036 0.964 48 H 0.067 0.933 49 H 0.113 0.887 50 H 0.396 0.604 51 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.791 26.568 -5.239 29.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.215 4.215 3 C -0.046 4.046 4 C -0.133 4.133 5 C -0.167 4.167 6 C 0.285 3.715 7 O -0.462 6.462 8 N -0.325 5.325 9 C -0.021 4.021 10 C -0.157 4.157 11 C -0.147 4.147 12 C -0.032 4.032 13 H 0.080 0.920 14 C 0.055 3.945 15 H 0.077 0.923 16 C -0.151 4.151 17 C -0.077 4.077 18 N -0.236 5.236 19 C -0.077 4.077 20 C 0.230 3.770 21 O -0.502 6.502 22 N -0.211 5.211 23 C -0.464 4.464 24 H 0.095 0.905 25 C -0.211 4.211 26 N -0.561 5.561 27 Si 0.816 3.184 28 H -0.194 1.194 29 H -0.199 1.199 30 H -0.197 1.197 31 H 0.253 0.747 32 H 0.129 0.871 33 H 0.124 0.876 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.150 0.850 37 H 0.140 0.860 38 H 0.090 0.910 39 H 0.138 0.862 40 H 0.129 0.871 41 H 0.094 0.906 42 H 0.079 0.921 43 H 0.091 0.909 44 H 0.077 0.923 45 H 0.092 0.908 46 H 0.079 0.921 47 H 0.055 0.945 48 H 0.085 0.915 49 H 0.131 0.869 50 H 0.230 0.770 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.116 25.788 -5.980 29.543 hybrid contribution -0.034 -1.565 1.228 1.990 sum -13.150 24.222 -4.752 27.968 Atomic orbital electron populations 1.25697 0.97163 1.00597 1.00810 1.23902 0.95951 1.00835 1.00767 1.18870 0.83516 1.00050 1.02150 1.21181 0.94081 0.98059 0.99969 1.21780 0.96021 0.97531 1.01383 1.21600 0.81633 0.86599 0.81650 1.90694 1.56241 1.49279 1.49980 1.47185 1.06788 1.29754 1.48821 1.21983 0.90523 0.93936 0.95678 1.21772 0.96400 0.95547 1.02024 1.21158 0.98336 0.94735 1.00494 1.21625 0.93226 0.88645 0.99712 0.91979 1.20106 0.93762 0.86709 0.93945 0.92343 1.22591 0.97397 0.93750 1.01361 1.22740 0.88300 0.97008 0.99681 1.63490 1.07253 1.01529 1.51308 1.21941 0.97792 0.93437 0.94538 1.20702 0.82410 0.87975 0.85961 1.90486 1.57503 1.74612 1.27560 1.41898 1.37251 1.16599 1.25398 1.19610 1.22415 0.94572 1.09762 0.90465 1.26010 0.95958 1.03188 0.95972 1.69662 1.28744 1.40045 1.17606 0.85002 0.78085 0.77148 0.78170 1.19357 1.19944 1.19685 0.74671 0.87134 0.87633 0.93394 0.92766 0.85003 0.86020 0.90987 0.86186 0.87144 0.90604 0.92088 0.90914 0.92251 0.90779 0.92120 0.94548 0.91514 0.86860 0.77034 0.91302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -3.41 19.25 74.32 1.43 -1.98 16 2 C -0.21 -3.43 13.34 31.13 0.42 -3.01 16 3 C -0.01 -0.09 5.70 28.79 0.16 0.07 16 4 C -0.09 -1.33 4.46 30.60 0.14 -1.19 16 5 C -0.13 -1.25 4.20 29.85 0.13 -1.12 16 6 C 0.49 9.99 7.21 87.66 0.63 10.62 16 7 O -0.58 -17.31 14.08 -3.03 -0.04 -17.36 16 8 N -0.59 -11.07 2.99 -806.16 -2.41 -13.48 16 9 C 0.10 1.01 5.73 86.63 0.50 1.50 16 10 C -0.12 -1.26 6.08 30.60 0.19 -1.07 16 11 C -0.11 -2.09 5.48 29.99 0.16 -1.92 16 12 C 0.08 1.87 2.57 43.73 0.11 1.99 16 13 H 0.06 1.41 7.61 -2.38 -0.02 1.39 16 14 C 0.16 3.98 2.72 45.36 0.12 4.10 16 15 H 0.06 1.52 8.12 -2.38 -0.02 1.50 16 16 C -0.11 -3.43 5.19 31.42 0.16 -3.27 16 17 C 0.05 1.82 5.84 86.58 0.51 2.33 16 18 N -0.51 -17.31 4.49 -874.83 -3.93 -21.24 16 19 C 0.05 1.93 5.07 85.56 0.43 2.37 16 20 C 0.44 21.60 7.58 87.66 0.66 22.27 16 21 O -0.62 -35.04 14.55 -3.07 -0.04 -35.09 16 22 N -0.57 -29.96 5.29 -306.99 -1.62 -31.58 16 23 C -0.33 -19.28 9.68 84.04 0.81 -18.46 16 24 H 0.08 4.76 7.16 -2.91 -0.02 4.73 16 25 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 26 N -0.92 -49.95 13.05 21.66 0.28 -49.66 16 27 Si 0.99 43.50 29.55 68.60 2.03 45.53 16 28 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 29 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 30 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 31 H 0.24 1.99 7.80 -4.43 -0.03 1.95 16 32 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.05 0.92 8.10 -2.39 -0.02 0.90 16 35 H 0.05 0.97 8.10 -2.39 -0.02 0.95 16 36 H 0.13 0.37 7.24 -2.39 -0.02 0.36 16 37 H 0.12 0.65 8.04 -2.39 -0.02 0.63 16 38 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 39 H 0.12 0.31 6.29 -2.39 -0.02 0.29 16 40 H 0.11 0.64 8.14 -2.39 -0.02 0.63 16 41 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.06 1.43 8.08 -2.39 -0.02 1.41 16 43 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.06 1.93 8.02 -2.39 -0.02 1.91 16 45 H 0.07 2.39 7.44 -2.39 -0.02 2.37 16 46 H 0.06 2.61 7.20 -2.39 -0.02 2.59 16 47 H 0.04 1.30 7.66 -2.39 -0.02 1.28 16 48 H 0.07 2.17 7.83 -2.39 -0.02 2.15 16 49 H 0.11 3.47 8.09 -2.38 -0.02 3.45 16 50 H 0.40 19.55 7.90 -92.71 -0.73 18.82 16 51 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 Total: -1.00 -79.36 408.74 1.48 -77.88 By element: Atomic # 1 Polarization: 31.76 SS G_CDS: 0.19 Total: 31.95 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: 7.03 Total: 13.06 kcal Atomic # 7 Polarization: -108.29 SS G_CDS: -7.68 Total: -115.97 kcal Atomic # 8 Polarization: -52.36 SS G_CDS: -0.09 Total: -52.44 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -79.36 1.48 -77.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733601681.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.722 kcal (2) G-P(sol) polarization free energy of solvation -79.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds