Wall clock time and date at job start Wed Apr 1 2020 04:33:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17404 * 1
3 3 C 1.47198 * 179.97438 * 2 1
4 4 C 1.53004 * 109.46904 * 218.43743 * 3 2 1
5 5 C 1.53008 * 109.46649 * 179.97438 * 4 3 2
6 6 C 1.50700 * 109.46419 * 179.97438 * 5 4 3
7 7 O 1.21283 * 120.00650 * 0.02562 * 6 5 4
8 8 N 1.34781 * 119.99733 * 179.97438 * 6 5 4
9 9 C 1.47910 * 122.25395 * 354.32997 * 8 6 5
10 10 C 1.52704 * 111.02286 * 127.97753 * 9 8 6
11 11 C 1.53843 * 111.61938 * 48.38372 * 10 9 8
12 12 C 1.51321 * 107.27622 * 302.72543 * 11 10 9
13 13 H 1.08998 * 109.57995 * 307.18465 * 12 11 10
14 14 C 1.45495 * 122.25381 * 174.34270 * 8 6 5
15 15 H 1.09002 * 110.77469 * 120.68107 * 14 8 6
16 16 C 1.52659 * 117.36283 * 352.80444 * 14 8 6
17 17 C 1.55127 * 103.84449 * 216.67140 * 16 14 8
18 18 N 1.46347 * 118.13223 * 180.58945 * 12 11 10
19 19 C 1.46894 * 111.00111 * 79.55890 * 18 12 11
20 20 C 1.50700 * 109.47028 * 169.99677 * 19 18 12
21 21 O 1.21296 * 120.00304 * 0.02562 * 20 19 18
22 22 N 1.34776 * 120.00059 * 179.97438 * 20 19 18
23 23 C 1.37096 * 120.00338 * 180.02562 * 22 20 19
24 24 H 1.08002 * 119.99671 * 0.02562 * 23 22 20
25 25 C 1.38947 * 120.00459 * 179.72677 * 23 22 20
26 26 N 1.31419 * 119.99730 * 0.27527 * 25 23 22
27 27 Si 1.86800 * 120.00384 * 180.27742 * 25 23 22
28 28 H 1.48505 * 109.47299 * 89.99934 * 27 25 23
29 29 H 1.48501 * 109.47383 * 210.00026 * 27 25 23
30 30 H 1.48502 * 109.46846 * 329.99881 * 27 25 23
31 31 H 4.44643 * 5.63349 * 179.97438 * 4 1 2
32 32 H 1.09002 * 109.47414 * 98.43239 * 3 2 1
33 33 H 1.09008 * 109.47119 * 338.43275 * 3 2 1
34 34 H 1.08993 * 109.47137 * 60.00299 * 4 3 2
35 35 H 1.08995 * 109.46856 * 299.99480 * 4 3 2
36 36 H 1.08993 * 109.47041 * 60.00320 * 5 4 3
37 37 H 1.08995 * 109.47133 * 299.99391 * 5 4 3
38 38 H 1.08998 * 109.16672 * 248.38089 * 9 8 6
39 39 H 1.09002 * 109.16540 * 7.63091 * 9 8 6
40 40 H 1.09001 * 109.05020 * 168.93762 * 10 9 8
41 41 H 1.09004 * 109.05389 * 287.83587 * 10 9 8
42 42 H 1.08995 * 109.89820 * 183.27777 * 11 10 9
43 43 H 1.08997 * 109.88922 * 62.16470 * 11 10 9
44 44 H 1.09000 * 110.54922 * 335.26150 * 16 14 8
45 45 H 1.09005 * 110.55295 * 97.93212 * 16 14 8
46 46 H 1.09005 * 109.99177 * 243.58569 * 17 16 14
47 47 H 1.08994 * 109.99392 * 122.25486 * 17 16 14
48 48 H 1.09004 * 109.46989 * 50.00364 * 19 18 12
49 49 H 1.08998 * 109.47432 * 289.99833 * 19 18 12
50 50 H 0.96999 * 120.00172 * 0.02562 * 22 20 19
51 51 H 0.96997 * 119.99706 * 179.97438 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6460 0.0007 0.0000
4 6 3.1555 1.1308 0.8968
5 6 4.6856 1.1311 0.8972
6 6 5.1873 2.2446 1.7800
7 8 4.3989 2.9666 2.3528
8 7 6.5123 2.4376 1.9339
9 6 7.5162 1.5147 1.3610
10 6 8.5529 2.2756 0.5375
11 6 9.1014 3.4928 1.3018
12 6 7.9200 4.3671 1.6619
13 1 7.3369 4.5804 0.7660
14 6 7.0515 3.5676 2.6750
15 1 7.6614 3.2259 3.5113
16 6 6.0656 4.6361 3.1405
17 6 6.8550 5.9625 2.9851
18 7 8.1778 5.6098 2.3905
19 6 8.6450 6.6655 1.4821
20 6 8.6646 7.9838 2.2120
21 8 8.3234 8.0385 3.3747
22 7 9.0621 9.1019 1.5731
23 6 9.0805 10.3012 2.2372
24 1 8.7767 10.3498 3.2725
25 6 9.4957 11.4530 1.5802
26 7 9.8658 11.3937 0.3206
27 14 9.5281 13.0856 2.4873
28 1 10.8556 13.2704 3.1268
29 1 9.2836 14.1909 1.5262
30 1 8.4709 13.0935 3.5301
31 1 -1.0501 -0.0001 -0.0004
32 1 3.0093 0.1515 -1.0166
33 1 3.0098 -0.9550 0.3778
34 1 2.7923 0.9798 1.9133
35 1 2.7918 2.0863 0.5190
36 1 5.0491 1.2818 -0.1191
37 1 5.0489 0.1755 1.2753
38 1 8.0197 0.9863 2.1705
39 1 7.0124 0.7909 0.7203
40 1 9.3779 1.6051 0.2969
41 1 8.0910 2.6160 -0.3893
42 1 9.7938 4.0473 0.6684
43 1 9.6091 3.1635 2.2083
44 1 5.1795 4.6416 2.5058
45 1 5.7881 4.4731 4.1819
46 1 6.9970 6.4281 3.9605
47 1 6.3174 6.6407 2.3226
48 1 7.9719 6.7334 0.6274
49 1 9.6504 6.4274 1.1349
50 1 9.3353 9.0582 0.6434
51 1 10.1553 12.1978 -0.1381
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001733601686.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:33:25
Heat of formation + Delta-G solvation = -6.498511 kcal
Electronic energy + Delta-G solvation = -30773.723685 eV
Core-core repulsion = 26674.595109 eV
Total energy + Delta-G solvation = -4099.128577 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.90 seconds
Orbital eigenvalues (eV)
-41.02038 -39.04345 -37.86440 -36.04303 -35.91939 -33.89067 -33.14390 -32.71701
-31.41292 -30.97580 -29.00783 -28.33677 -26.46362 -25.15307 -24.19999 -22.84252
-22.10763 -21.19470 -20.30185 -19.43985 -18.97350 -18.31721 -17.80373 -16.68654
-16.41601 -16.26344 -15.93088 -15.31251 -15.12843 -14.89413 -14.64614 -14.51358
-14.27907 -14.04298 -13.89539 -13.76989 -13.66471 -13.33447 -12.97402 -12.70287
-12.56393 -12.39976 -12.24341 -12.01594 -11.77963 -11.53060 -11.39562 -11.32322
-11.15141 -11.12982 -11.04005 -10.87518 -10.69312 -10.58191 -10.52458 -10.42239
-10.37866 -10.20597 -9.49321 -9.37428 -8.71899 -8.39874 -7.98408 -7.90520
-6.40484 -3.81091 2.43842 2.46056 2.53037 2.74659 3.18941 3.27445
3.33557 3.90675 3.96193 4.03865 4.15651 4.24157 4.49599 4.57202
4.63497 4.68570 4.71429 4.79297 4.95106 5.01710 5.07852 5.15945
5.16716 5.21578 5.22889 5.26393 5.29741 5.41382 5.47740 5.52235
5.66420 5.70028 5.74117 5.75269 5.76256 5.87496 5.93684 5.98409
5.99476 6.14053 6.22155 6.29694 6.37937 6.57481 6.72735 7.20056
7.25184 7.31032 7.37330 7.56635 8.03310 8.07449 8.62949 9.19364
9.55413 10.07182 10.77324
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.015772 B = 0.002065 C = 0.001945
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1774.834605 B =13555.225461 C =14393.052782
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.211 4.211
2 C -0.187 4.187
3 C -0.013 4.013
4 C -0.100 4.100
5 C -0.141 4.141
6 C 0.517 3.483
7 O -0.529 6.529
8 N -0.606 5.606
9 C 0.109 3.891
10 C -0.133 4.133
11 C -0.104 4.104
12 C 0.046 3.954
13 H 0.045 0.955
14 C 0.141 3.859
15 H 0.086 0.914
16 C -0.135 4.135
17 C 0.049 3.951
18 N -0.482 5.482
19 C 0.037 3.963
20 C 0.443 3.557
21 O -0.579 6.579
22 N -0.564 5.564
23 C -0.298 4.298
24 H 0.103 0.897
25 C 0.022 3.978
26 N -0.902 5.902
27 Si 0.930 3.070
28 H -0.278 1.278
29 H -0.284 1.284
30 H -0.270 1.270
31 H 0.216 0.784
32 H 0.087 0.913
33 H 0.086 0.914
34 H 0.075 0.925
35 H 0.075 0.925
36 H 0.094 0.906
37 H 0.094 0.906
38 H 0.071 0.929
39 H 0.084 0.916
40 H 0.080 0.920
41 H 0.065 0.935
42 H 0.070 0.930
43 H 0.075 0.925
44 H 0.099 0.901
45 H 0.072 0.928
46 H 0.101 0.899
47 H 0.043 0.957
48 H 0.047 0.953
49 H 0.089 0.911
50 H 0.392 0.608
51 H 0.271 0.729
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.372 -26.434 -4.820 27.863
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.227 4.227
2 C -0.187 4.187
3 C -0.049 4.049
4 C -0.138 4.138
5 C -0.181 4.181
6 C 0.305 3.695
7 O -0.405 6.405
8 N -0.340 5.340
9 C -0.013 4.013
10 C -0.172 4.172
11 C -0.142 4.142
12 C -0.064 4.064
13 H 0.063 0.937
14 C 0.036 3.964
15 H 0.104 0.896
16 C -0.173 4.173
17 C -0.078 4.078
18 N -0.206 5.206
19 C -0.094 4.094
20 C 0.228 3.772
21 O -0.463 6.463
22 N -0.200 5.200
23 C -0.427 4.427
24 H 0.121 0.879
25 C -0.180 4.180
26 N -0.544 5.544
27 Si 0.757 3.243
28 H -0.204 1.204
29 H -0.210 1.210
30 H -0.194 1.194
31 H 0.233 0.767
32 H 0.105 0.895
33 H 0.105 0.895
34 H 0.093 0.907
35 H 0.094 0.906
36 H 0.113 0.887
37 H 0.112 0.888
38 H 0.089 0.911
39 H 0.102 0.898
40 H 0.099 0.901
41 H 0.084 0.916
42 H 0.088 0.912
43 H 0.093 0.907
44 H 0.117 0.883
45 H 0.090 0.910
46 H 0.119 0.881
47 H 0.061 0.939
48 H 0.065 0.935
49 H 0.107 0.893
50 H 0.225 0.775
51 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges -7.563 -25.902 -3.451 27.204
hybrid contribution -0.333 0.996 -1.055 1.489
sum -7.896 -24.907 -4.507 26.514
Atomic orbital electron populations
1.24938 0.96041 1.00813 1.00954 1.23086 0.94581 1.00531 1.00485
1.18760 0.84934 0.99977 1.01270 1.21293 0.92891 0.98783 1.00849
1.21728 0.97390 0.98337 1.00602 1.20601 0.81354 0.85668 0.81840
1.90676 1.54846 1.47041 1.47981 1.47963 1.05322 1.26942 1.53760
1.21770 0.90086 0.91673 0.97784 1.21921 0.98471 0.97789 0.98980
1.21267 0.97141 0.94957 1.00791 1.22642 0.96338 0.91573 0.95860
0.93679 1.21647 0.95133 0.85798 0.93778 0.89606 1.22754 0.98785
0.92812 1.02969 1.23374 0.86959 0.95129 1.02371 1.64465 1.26816
1.01220 1.28114 1.22088 1.01250 0.91941 0.94150 1.19710 0.84571
0.84782 0.88110 1.90503 1.52879 1.85905 1.16998 1.41849 1.58012
1.06501 1.13659 1.19702 1.41478 0.83801 0.97751 0.87900 1.25262
0.97065 0.99848 0.95814 1.69617 1.44763 1.30224 1.09775 0.85855
0.78782 0.80765 0.78873 1.20398 1.20962 1.19426 0.76695 0.89496
0.89529 0.90660 0.90633 0.88726 0.88778 0.91086 0.89778 0.90125
0.91589 0.91158 0.90680 0.88266 0.90960 0.88071 0.93890 0.93522
0.89272 0.77518 0.91908
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.21 -1.70 19.25 29.55 0.57 -1.13 16
2 C -0.19 -1.62 13.34 -37.12 -0.50 -2.12 16
3 C -0.01 -0.08 5.70 -29.52 -0.17 -0.25 16
4 C -0.10 -0.78 4.46 -26.72 -0.12 -0.90 16
5 C -0.14 -0.91 4.12 -27.88 -0.11 -1.03 16
6 C 0.52 5.63 7.66 -10.98 -0.08 5.55 16
7 O -0.53 -7.85 12.76 5.55 0.07 -7.78 16
8 N -0.61 -6.16 2.92 -164.53 -0.48 -6.64 16
9 C 0.11 0.70 6.34 -3.42 -0.02 0.68 16
10 C -0.13 -0.91 5.94 -26.44 -0.16 -1.06 16
11 C -0.10 -1.05 5.94 -27.14 -0.16 -1.21 16
12 C 0.05 0.62 1.69 -67.50 -0.11 0.50 16
13 H 0.05 0.65 7.83 -51.93 -0.41 0.24 16
14 C 0.14 1.82 3.20 -67.28 -0.22 1.60 16
15 H 0.09 1.12 8.07 -51.93 -0.42 0.70 16
16 C -0.14 -2.09 5.51 -25.78 -0.14 -2.23 16
17 C 0.05 0.89 5.16 -1.39 -0.01 0.89 16
18 N -0.48 -8.33 5.20 -224.48 -1.17 -9.50 16
19 C 0.04 0.69 5.43 -4.98 -0.03 0.67 16
20 C 0.44 10.63 7.40 -10.99 -0.08 10.54 16
21 O -0.58 -15.67 13.55 5.54 0.08 -15.59 16
22 N -0.56 -14.49 5.29 -10.96 -0.06 -14.54 16
23 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16
24 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16
25 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16
26 N -0.90 -24.76 13.05 55.50 0.72 -24.03 16
27 Si 0.93 21.30 29.55 -169.99 -5.02 16.28 16
28 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16
29 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16
30 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16
31 H 0.22 1.05 7.80 -54.09 -0.42 0.63 16
32 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16
33 H 0.09 0.39 8.14 -51.92 -0.42 -0.04 16
34 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16
35 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16
36 H 0.09 0.45 7.97 -51.93 -0.41 0.04 16
37 H 0.09 0.39 7.81 -51.93 -0.41 -0.01 16
38 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16
39 H 0.08 0.32 6.18 -51.93 -0.32 0.00 16
40 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16
41 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16
42 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16
43 H 0.07 0.77 8.06 -51.93 -0.42 0.35 16
44 H 0.10 1.66 5.54 -51.93 -0.29 1.37 16
45 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16
46 H 0.10 2.10 6.86 -51.93 -0.36 1.74 16
47 H 0.04 0.84 7.66 -51.93 -0.40 0.44 16
48 H 0.05 0.81 7.89 -51.93 -0.41 0.40 16
49 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16
50 H 0.39 9.64 7.90 -40.82 -0.32 9.32 16
51 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16
LS Contribution 406.33 15.07 6.12 6.12
Total: -1.00 -34.06 406.33 -9.63 -43.69
By element:
Atomic # 1 Polarization: 17.85 SS G_CDS: -8.31 Total: 9.53 kcal
Atomic # 6 Polarization: 4.04 SS G_CDS: -1.58 Total: 2.46 kcal
Atomic # 7 Polarization: -53.73 SS G_CDS: -0.98 Total: -54.71 kcal
Atomic # 8 Polarization: -23.52 SS G_CDS: 0.15 Total: -23.37 kcal
Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal
Total LS contribution 6.12 Total: 6.12 kcal
Total: -34.06 -9.63 -43.69 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001733601686.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 37.194 kcal
(2) G-P(sol) polarization free energy of solvation -34.064 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.130 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.629 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.692 kcal
(6) G-S(sol) free energy of system = (1) + (5) -6.499 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.90 seconds