Wall clock time and date at job start Wed Apr 1 2020 04:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53004 * 109.46904 * 218.43743 * 3 2 1 5 5 C 1.53008 * 109.46649 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.46419 * 179.97438 * 5 4 3 7 7 O 1.21283 * 120.00650 * 0.02562 * 6 5 4 8 8 N 1.34781 * 119.99733 * 179.97438 * 6 5 4 9 9 C 1.47910 * 122.25395 * 354.32997 * 8 6 5 10 10 C 1.52704 * 111.02286 * 127.97753 * 9 8 6 11 11 C 1.53843 * 111.61938 * 48.38372 * 10 9 8 12 12 C 1.51321 * 107.27622 * 302.72543 * 11 10 9 13 13 H 1.08998 * 109.57995 * 307.18465 * 12 11 10 14 14 C 1.45495 * 122.25381 * 174.34270 * 8 6 5 15 15 H 1.09002 * 110.77469 * 120.68107 * 14 8 6 16 16 C 1.52659 * 117.36283 * 352.80444 * 14 8 6 17 17 C 1.55127 * 103.84449 * 216.67140 * 16 14 8 18 18 N 1.46347 * 118.13223 * 180.58945 * 12 11 10 19 19 C 1.46894 * 111.00111 * 79.55890 * 18 12 11 20 20 C 1.50700 * 109.47028 * 169.99677 * 19 18 12 21 21 O 1.21296 * 120.00304 * 0.02562 * 20 19 18 22 22 N 1.34776 * 120.00059 * 179.97438 * 20 19 18 23 23 C 1.37096 * 120.00338 * 180.02562 * 22 20 19 24 24 H 1.08002 * 119.99671 * 0.02562 * 23 22 20 25 25 C 1.38947 * 120.00459 * 179.72677 * 23 22 20 26 26 N 1.31419 * 119.99730 * 0.27527 * 25 23 22 27 27 Si 1.86800 * 120.00384 * 180.27742 * 25 23 22 28 28 H 1.48505 * 109.47299 * 89.99934 * 27 25 23 29 29 H 1.48501 * 109.47383 * 210.00026 * 27 25 23 30 30 H 1.48502 * 109.46846 * 329.99881 * 27 25 23 31 31 H 4.44643 * 5.63349 * 179.97438 * 4 1 2 32 32 H 1.09002 * 109.47414 * 98.43239 * 3 2 1 33 33 H 1.09008 * 109.47119 * 338.43275 * 3 2 1 34 34 H 1.08993 * 109.47137 * 60.00299 * 4 3 2 35 35 H 1.08995 * 109.46856 * 299.99480 * 4 3 2 36 36 H 1.08993 * 109.47041 * 60.00320 * 5 4 3 37 37 H 1.08995 * 109.47133 * 299.99391 * 5 4 3 38 38 H 1.08998 * 109.16672 * 248.38089 * 9 8 6 39 39 H 1.09002 * 109.16540 * 7.63091 * 9 8 6 40 40 H 1.09001 * 109.05020 * 168.93762 * 10 9 8 41 41 H 1.09004 * 109.05389 * 287.83587 * 10 9 8 42 42 H 1.08995 * 109.89820 * 183.27777 * 11 10 9 43 43 H 1.08997 * 109.88922 * 62.16470 * 11 10 9 44 44 H 1.09000 * 110.54922 * 335.26150 * 16 14 8 45 45 H 1.09005 * 110.55295 * 97.93212 * 16 14 8 46 46 H 1.09005 * 109.99177 * 243.58569 * 17 16 14 47 47 H 1.08994 * 109.99392 * 122.25486 * 17 16 14 48 48 H 1.09004 * 109.46989 * 50.00364 * 19 18 12 49 49 H 1.08998 * 109.47432 * 289.99833 * 19 18 12 50 50 H 0.96999 * 120.00172 * 0.02562 * 22 20 19 51 51 H 0.96997 * 119.99706 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1555 1.1308 0.8968 5 6 4.6856 1.1311 0.8972 6 6 5.1873 2.2446 1.7800 7 8 4.3989 2.9666 2.3528 8 7 6.5123 2.4376 1.9339 9 6 7.5162 1.5147 1.3610 10 6 8.5529 2.2756 0.5375 11 6 9.1014 3.4928 1.3018 12 6 7.9200 4.3671 1.6619 13 1 7.3369 4.5804 0.7660 14 6 7.0515 3.5676 2.6750 15 1 7.6614 3.2259 3.5113 16 6 6.0656 4.6361 3.1405 17 6 6.8550 5.9625 2.9851 18 7 8.1778 5.6098 2.3905 19 6 8.6450 6.6655 1.4821 20 6 8.6646 7.9838 2.2120 21 8 8.3234 8.0385 3.3747 22 7 9.0621 9.1019 1.5731 23 6 9.0805 10.3012 2.2372 24 1 8.7767 10.3498 3.2725 25 6 9.4957 11.4530 1.5802 26 7 9.8658 11.3937 0.3206 27 14 9.5281 13.0856 2.4873 28 1 10.8556 13.2704 3.1268 29 1 9.2836 14.1909 1.5262 30 1 8.4709 13.0935 3.5301 31 1 -1.0501 -0.0001 -0.0004 32 1 3.0093 0.1515 -1.0166 33 1 3.0098 -0.9550 0.3778 34 1 2.7923 0.9798 1.9133 35 1 2.7918 2.0863 0.5190 36 1 5.0491 1.2818 -0.1191 37 1 5.0489 0.1755 1.2753 38 1 8.0197 0.9863 2.1705 39 1 7.0124 0.7909 0.7203 40 1 9.3779 1.6051 0.2969 41 1 8.0910 2.6160 -0.3893 42 1 9.7938 4.0473 0.6684 43 1 9.6091 3.1635 2.2083 44 1 5.1795 4.6416 2.5058 45 1 5.7881 4.4731 4.1819 46 1 6.9970 6.4281 3.9605 47 1 6.3174 6.6407 2.3226 48 1 7.9719 6.7334 0.6274 49 1 9.6504 6.4274 1.1349 50 1 9.3353 9.0582 0.6434 51 1 10.1553 12.1978 -0.1381 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733601686.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:25 Heat of formation + Delta-G solvation = -6.498511 kcal Electronic energy + Delta-G solvation = -30773.723685 eV Core-core repulsion = 26674.595109 eV Total energy + Delta-G solvation = -4099.128577 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.02038 -39.04345 -37.86440 -36.04303 -35.91939 -33.89067 -33.14390 -32.71701 -31.41292 -30.97580 -29.00783 -28.33677 -26.46362 -25.15307 -24.19999 -22.84252 -22.10763 -21.19470 -20.30185 -19.43985 -18.97350 -18.31721 -17.80373 -16.68654 -16.41601 -16.26344 -15.93088 -15.31251 -15.12843 -14.89413 -14.64614 -14.51358 -14.27907 -14.04298 -13.89539 -13.76989 -13.66471 -13.33447 -12.97402 -12.70287 -12.56393 -12.39976 -12.24341 -12.01594 -11.77963 -11.53060 -11.39562 -11.32322 -11.15141 -11.12982 -11.04005 -10.87518 -10.69312 -10.58191 -10.52458 -10.42239 -10.37866 -10.20597 -9.49321 -9.37428 -8.71899 -8.39874 -7.98408 -7.90520 -6.40484 -3.81091 2.43842 2.46056 2.53037 2.74659 3.18941 3.27445 3.33557 3.90675 3.96193 4.03865 4.15651 4.24157 4.49599 4.57202 4.63497 4.68570 4.71429 4.79297 4.95106 5.01710 5.07852 5.15945 5.16716 5.21578 5.22889 5.26393 5.29741 5.41382 5.47740 5.52235 5.66420 5.70028 5.74117 5.75269 5.76256 5.87496 5.93684 5.98409 5.99476 6.14053 6.22155 6.29694 6.37937 6.57481 6.72735 7.20056 7.25184 7.31032 7.37330 7.56635 8.03310 8.07449 8.62949 9.19364 9.55413 10.07182 10.77324 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015772 B = 0.002065 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.834605 B =13555.225461 C =14393.052782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.187 4.187 3 C -0.013 4.013 4 C -0.100 4.100 5 C -0.141 4.141 6 C 0.517 3.483 7 O -0.529 6.529 8 N -0.606 5.606 9 C 0.109 3.891 10 C -0.133 4.133 11 C -0.104 4.104 12 C 0.046 3.954 13 H 0.045 0.955 14 C 0.141 3.859 15 H 0.086 0.914 16 C -0.135 4.135 17 C 0.049 3.951 18 N -0.482 5.482 19 C 0.037 3.963 20 C 0.443 3.557 21 O -0.579 6.579 22 N -0.564 5.564 23 C -0.298 4.298 24 H 0.103 0.897 25 C 0.022 3.978 26 N -0.902 5.902 27 Si 0.930 3.070 28 H -0.278 1.278 29 H -0.284 1.284 30 H -0.270 1.270 31 H 0.216 0.784 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.065 0.935 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.099 0.901 45 H 0.072 0.928 46 H 0.101 0.899 47 H 0.043 0.957 48 H 0.047 0.953 49 H 0.089 0.911 50 H 0.392 0.608 51 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.372 -26.434 -4.820 27.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.187 4.187 3 C -0.049 4.049 4 C -0.138 4.138 5 C -0.181 4.181 6 C 0.305 3.695 7 O -0.405 6.405 8 N -0.340 5.340 9 C -0.013 4.013 10 C -0.172 4.172 11 C -0.142 4.142 12 C -0.064 4.064 13 H 0.063 0.937 14 C 0.036 3.964 15 H 0.104 0.896 16 C -0.173 4.173 17 C -0.078 4.078 18 N -0.206 5.206 19 C -0.094 4.094 20 C 0.228 3.772 21 O -0.463 6.463 22 N -0.200 5.200 23 C -0.427 4.427 24 H 0.121 0.879 25 C -0.180 4.180 26 N -0.544 5.544 27 Si 0.757 3.243 28 H -0.204 1.204 29 H -0.210 1.210 30 H -0.194 1.194 31 H 0.233 0.767 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.089 0.911 39 H 0.102 0.898 40 H 0.099 0.901 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.093 0.907 44 H 0.117 0.883 45 H 0.090 0.910 46 H 0.119 0.881 47 H 0.061 0.939 48 H 0.065 0.935 49 H 0.107 0.893 50 H 0.225 0.775 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.563 -25.902 -3.451 27.204 hybrid contribution -0.333 0.996 -1.055 1.489 sum -7.896 -24.907 -4.507 26.514 Atomic orbital electron populations 1.24938 0.96041 1.00813 1.00954 1.23086 0.94581 1.00531 1.00485 1.18760 0.84934 0.99977 1.01270 1.21293 0.92891 0.98783 1.00849 1.21728 0.97390 0.98337 1.00602 1.20601 0.81354 0.85668 0.81840 1.90676 1.54846 1.47041 1.47981 1.47963 1.05322 1.26942 1.53760 1.21770 0.90086 0.91673 0.97784 1.21921 0.98471 0.97789 0.98980 1.21267 0.97141 0.94957 1.00791 1.22642 0.96338 0.91573 0.95860 0.93679 1.21647 0.95133 0.85798 0.93778 0.89606 1.22754 0.98785 0.92812 1.02969 1.23374 0.86959 0.95129 1.02371 1.64465 1.26816 1.01220 1.28114 1.22088 1.01250 0.91941 0.94150 1.19710 0.84571 0.84782 0.88110 1.90503 1.52879 1.85905 1.16998 1.41849 1.58012 1.06501 1.13659 1.19702 1.41478 0.83801 0.97751 0.87900 1.25262 0.97065 0.99848 0.95814 1.69617 1.44763 1.30224 1.09775 0.85855 0.78782 0.80765 0.78873 1.20398 1.20962 1.19426 0.76695 0.89496 0.89529 0.90660 0.90633 0.88726 0.88778 0.91086 0.89778 0.90125 0.91589 0.91158 0.90680 0.88266 0.90960 0.88071 0.93890 0.93522 0.89272 0.77518 0.91908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.70 19.25 29.55 0.57 -1.13 16 2 C -0.19 -1.62 13.34 -37.12 -0.50 -2.12 16 3 C -0.01 -0.08 5.70 -29.52 -0.17 -0.25 16 4 C -0.10 -0.78 4.46 -26.72 -0.12 -0.90 16 5 C -0.14 -0.91 4.12 -27.88 -0.11 -1.03 16 6 C 0.52 5.63 7.66 -10.98 -0.08 5.55 16 7 O -0.53 -7.85 12.76 5.55 0.07 -7.78 16 8 N -0.61 -6.16 2.92 -164.53 -0.48 -6.64 16 9 C 0.11 0.70 6.34 -3.42 -0.02 0.68 16 10 C -0.13 -0.91 5.94 -26.44 -0.16 -1.06 16 11 C -0.10 -1.05 5.94 -27.14 -0.16 -1.21 16 12 C 0.05 0.62 1.69 -67.50 -0.11 0.50 16 13 H 0.05 0.65 7.83 -51.93 -0.41 0.24 16 14 C 0.14 1.82 3.20 -67.28 -0.22 1.60 16 15 H 0.09 1.12 8.07 -51.93 -0.42 0.70 16 16 C -0.14 -2.09 5.51 -25.78 -0.14 -2.23 16 17 C 0.05 0.89 5.16 -1.39 -0.01 0.89 16 18 N -0.48 -8.33 5.20 -224.48 -1.17 -9.50 16 19 C 0.04 0.69 5.43 -4.98 -0.03 0.67 16 20 C 0.44 10.63 7.40 -10.99 -0.08 10.54 16 21 O -0.58 -15.67 13.55 5.54 0.08 -15.59 16 22 N -0.56 -14.49 5.29 -10.96 -0.06 -14.54 16 23 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 24 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 25 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 26 N -0.90 -24.76 13.05 55.50 0.72 -24.03 16 27 Si 0.93 21.30 29.55 -169.99 -5.02 16.28 16 28 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 29 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 30 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 31 H 0.22 1.05 7.80 -54.09 -0.42 0.63 16 32 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.09 0.39 8.14 -51.92 -0.42 -0.04 16 34 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 35 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 36 H 0.09 0.45 7.97 -51.93 -0.41 0.04 16 37 H 0.09 0.39 7.81 -51.93 -0.41 -0.01 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.08 0.32 6.18 -51.93 -0.32 0.00 16 40 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.07 0.77 8.06 -51.93 -0.42 0.35 16 44 H 0.10 1.66 5.54 -51.93 -0.29 1.37 16 45 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 46 H 0.10 2.10 6.86 -51.93 -0.36 1.74 16 47 H 0.04 0.84 7.66 -51.93 -0.40 0.44 16 48 H 0.05 0.81 7.89 -51.93 -0.41 0.40 16 49 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 50 H 0.39 9.64 7.90 -40.82 -0.32 9.32 16 51 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 406.33 15.07 6.12 6.12 Total: -1.00 -34.06 406.33 -9.63 -43.69 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -8.31 Total: 9.53 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: -1.58 Total: 2.46 kcal Atomic # 7 Polarization: -53.73 SS G_CDS: -0.98 Total: -54.71 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: 0.15 Total: -23.37 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.06 -9.63 -43.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733601686.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.194 kcal (2) G-P(sol) polarization free energy of solvation -34.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds