Wall clock time and date at job start Wed Apr 1 2020 04:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53004 * 109.46904 * 218.43743 * 3 2 1 5 5 C 1.53008 * 109.46649 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.46419 * 179.97438 * 5 4 3 7 7 O 1.21283 * 120.00650 * 0.02562 * 6 5 4 8 8 N 1.34781 * 119.99733 * 179.97438 * 6 5 4 9 9 C 1.47910 * 122.25395 * 354.32997 * 8 6 5 10 10 C 1.52704 * 111.02286 * 127.97753 * 9 8 6 11 11 C 1.53843 * 111.61938 * 48.38372 * 10 9 8 12 12 C 1.51321 * 107.27622 * 302.72543 * 11 10 9 13 13 H 1.08998 * 109.57995 * 307.18465 * 12 11 10 14 14 C 1.45495 * 122.25381 * 174.34270 * 8 6 5 15 15 H 1.09002 * 110.77469 * 120.68107 * 14 8 6 16 16 C 1.52659 * 117.36283 * 352.80444 * 14 8 6 17 17 C 1.55127 * 103.84449 * 216.67140 * 16 14 8 18 18 N 1.46347 * 118.13223 * 180.58945 * 12 11 10 19 19 C 1.46894 * 111.00111 * 79.55890 * 18 12 11 20 20 C 1.50700 * 109.47028 * 169.99677 * 19 18 12 21 21 O 1.21296 * 120.00304 * 0.02562 * 20 19 18 22 22 N 1.34776 * 120.00059 * 179.97438 * 20 19 18 23 23 C 1.37096 * 120.00338 * 180.02562 * 22 20 19 24 24 H 1.08002 * 119.99671 * 0.02562 * 23 22 20 25 25 C 1.38947 * 120.00459 * 179.72677 * 23 22 20 26 26 N 1.31419 * 119.99730 * 0.27527 * 25 23 22 27 27 Si 1.86800 * 120.00384 * 180.27742 * 25 23 22 28 28 H 1.48505 * 109.47299 * 89.99934 * 27 25 23 29 29 H 1.48501 * 109.47383 * 210.00026 * 27 25 23 30 30 H 1.48502 * 109.46846 * 329.99881 * 27 25 23 31 31 H 4.44643 * 5.63349 * 179.97438 * 4 1 2 32 32 H 1.09002 * 109.47414 * 98.43239 * 3 2 1 33 33 H 1.09008 * 109.47119 * 338.43275 * 3 2 1 34 34 H 1.08993 * 109.47137 * 60.00299 * 4 3 2 35 35 H 1.08995 * 109.46856 * 299.99480 * 4 3 2 36 36 H 1.08993 * 109.47041 * 60.00320 * 5 4 3 37 37 H 1.08995 * 109.47133 * 299.99391 * 5 4 3 38 38 H 1.08998 * 109.16672 * 248.38089 * 9 8 6 39 39 H 1.09002 * 109.16540 * 7.63091 * 9 8 6 40 40 H 1.09001 * 109.05020 * 168.93762 * 10 9 8 41 41 H 1.09004 * 109.05389 * 287.83587 * 10 9 8 42 42 H 1.08995 * 109.89820 * 183.27777 * 11 10 9 43 43 H 1.08997 * 109.88922 * 62.16470 * 11 10 9 44 44 H 1.09000 * 110.54922 * 335.26150 * 16 14 8 45 45 H 1.09005 * 110.55295 * 97.93212 * 16 14 8 46 46 H 1.09005 * 109.99177 * 243.58569 * 17 16 14 47 47 H 1.08994 * 109.99392 * 122.25486 * 17 16 14 48 48 H 1.09004 * 109.46989 * 50.00364 * 19 18 12 49 49 H 1.08998 * 109.47432 * 289.99833 * 19 18 12 50 50 H 0.96999 * 120.00172 * 0.02562 * 22 20 19 51 51 H 0.96997 * 119.99706 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1555 1.1308 0.8968 5 6 4.6856 1.1311 0.8972 6 6 5.1873 2.2446 1.7800 7 8 4.3989 2.9666 2.3528 8 7 6.5123 2.4376 1.9339 9 6 7.5162 1.5147 1.3610 10 6 8.5529 2.2756 0.5375 11 6 9.1014 3.4928 1.3018 12 6 7.9200 4.3671 1.6619 13 1 7.3369 4.5804 0.7660 14 6 7.0515 3.5676 2.6750 15 1 7.6614 3.2259 3.5113 16 6 6.0656 4.6361 3.1405 17 6 6.8550 5.9625 2.9851 18 7 8.1778 5.6098 2.3905 19 6 8.6450 6.6655 1.4821 20 6 8.6646 7.9838 2.2120 21 8 8.3234 8.0385 3.3747 22 7 9.0621 9.1019 1.5731 23 6 9.0805 10.3012 2.2372 24 1 8.7767 10.3498 3.2725 25 6 9.4957 11.4530 1.5802 26 7 9.8658 11.3937 0.3206 27 14 9.5281 13.0856 2.4873 28 1 10.8556 13.2704 3.1268 29 1 9.2836 14.1909 1.5262 30 1 8.4709 13.0935 3.5301 31 1 -1.0501 -0.0001 -0.0004 32 1 3.0093 0.1515 -1.0166 33 1 3.0098 -0.9550 0.3778 34 1 2.7923 0.9798 1.9133 35 1 2.7918 2.0863 0.5190 36 1 5.0491 1.2818 -0.1191 37 1 5.0489 0.1755 1.2753 38 1 8.0197 0.9863 2.1705 39 1 7.0124 0.7909 0.7203 40 1 9.3779 1.6051 0.2969 41 1 8.0910 2.6160 -0.3893 42 1 9.7938 4.0473 0.6684 43 1 9.6091 3.1635 2.2083 44 1 5.1795 4.6416 2.5058 45 1 5.7881 4.4731 4.1819 46 1 6.9970 6.4281 3.9605 47 1 6.3174 6.6407 2.3226 48 1 7.9719 6.7334 0.6274 49 1 9.6504 6.4274 1.1349 50 1 9.3353 9.0582 0.6434 51 1 10.1553 12.1978 -0.1381 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733601686.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:24 Heat of formation + Delta-G solvation = -30.153146 kcal Electronic energy + Delta-G solvation = -30774.749427 eV Core-core repulsion = 26674.595109 eV Total energy + Delta-G solvation = -4100.154319 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.00636 -40.44363 -39.33395 -37.11635 -36.50674 -35.91975 -34.06008 -33.46478 -33.28080 -32.28597 -29.98249 -29.06177 -28.03149 -26.07117 -25.93147 -23.63758 -22.97929 -22.26472 -21.45252 -20.94437 -20.10543 -19.76789 -18.89333 -17.79193 -17.44511 -17.35704 -16.97286 -16.56144 -16.49002 -16.12840 -15.83993 -15.64842 -15.50755 -15.40419 -15.07721 -14.75292 -14.58940 -14.36600 -14.10157 -13.81480 -13.60086 -13.53628 -13.33944 -13.25060 -12.96936 -12.91320 -12.59963 -12.50026 -12.44231 -12.30585 -12.14031 -11.99064 -11.91798 -11.82742 -11.76322 -11.55836 -11.50894 -11.12831 -10.95424 -10.34857 -10.29341 -10.04110 -9.62296 -9.38144 -8.49342 -5.98137 1.35601 1.39380 1.52251 1.65481 1.80927 1.93529 1.99634 2.01132 2.26998 2.78794 3.13652 3.17757 3.40244 3.52320 3.58797 3.89919 3.91745 4.04083 4.10618 4.13969 4.16231 4.19131 4.25279 4.29270 4.35584 4.41349 4.47735 4.52800 4.60273 4.68042 4.69196 4.75998 4.80149 4.87126 4.93757 4.99080 5.04940 5.15542 5.21203 5.21681 5.23079 5.24161 5.35673 5.38295 5.43460 5.51917 5.78534 5.93238 6.08723 6.51700 6.57144 6.73273 7.09563 7.23497 7.51465 8.07399 8.68141 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015772 B = 0.002065 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.834605 B =13555.225461 C =14393.052782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.215 4.215 3 C -0.009 4.009 4 C -0.095 4.095 5 C -0.128 4.128 6 C 0.506 3.494 7 O -0.581 6.581 8 N -0.604 5.604 9 C 0.102 3.898 10 C -0.125 4.125 11 C -0.103 4.103 12 C 0.050 3.950 13 H 0.038 0.962 14 C 0.147 3.853 15 H 0.087 0.913 16 C -0.124 4.124 17 C 0.055 3.945 18 N -0.493 5.493 19 C 0.051 3.949 20 C 0.438 3.562 21 O -0.615 6.615 22 N -0.572 5.572 23 C -0.334 4.334 24 H 0.078 0.922 25 C -0.013 4.013 26 N -0.919 5.919 27 Si 0.994 3.006 28 H -0.269 1.269 29 H -0.269 1.269 30 H -0.275 1.275 31 H 0.236 0.764 32 H 0.107 0.893 33 H 0.111 0.889 34 H 0.052 0.948 35 H 0.047 0.953 36 H 0.124 0.876 37 H 0.131 0.869 38 H 0.086 0.914 39 H 0.122 0.878 40 H 0.112 0.888 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.087 0.913 45 H 0.065 0.935 46 H 0.066 0.934 47 H 0.019 0.981 48 H 0.060 0.940 49 H 0.115 0.885 50 H 0.396 0.604 51 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.099 -29.317 -6.787 30.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.215 4.215 3 C -0.045 4.045 4 C -0.134 4.134 5 C -0.167 4.167 6 C 0.297 3.703 7 O -0.461 6.461 8 N -0.337 5.337 9 C -0.018 4.018 10 C -0.164 4.164 11 C -0.141 4.141 12 C -0.060 4.060 13 H 0.056 0.944 14 C 0.042 3.958 15 H 0.105 0.895 16 C -0.163 4.163 17 C -0.073 4.073 18 N -0.218 5.218 19 C -0.080 4.080 20 C 0.225 3.775 21 O -0.501 6.501 22 N -0.209 5.209 23 C -0.463 4.463 24 H 0.096 0.904 25 C -0.212 4.212 26 N -0.560 5.560 27 Si 0.817 3.183 28 H -0.194 1.194 29 H -0.194 1.194 30 H -0.200 1.200 31 H 0.253 0.747 32 H 0.125 0.875 33 H 0.129 0.871 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.142 0.858 37 H 0.149 0.851 38 H 0.104 0.896 39 H 0.140 0.860 40 H 0.130 0.870 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.094 0.906 44 H 0.106 0.894 45 H 0.084 0.916 46 H 0.084 0.916 47 H 0.037 0.963 48 H 0.078 0.922 49 H 0.133 0.867 50 H 0.230 0.770 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.255 -28.831 -5.463 30.003 hybrid contribution -0.771 1.881 -0.413 2.074 sum -7.026 -26.950 -5.876 28.464 Atomic orbital electron populations 1.25709 0.97182 1.00616 1.00800 1.23914 0.95976 1.00826 1.00766 1.18868 0.83474 1.00181 1.01983 1.21181 0.94178 0.98182 0.99826 1.21755 0.95933 0.97899 1.01120 1.21497 0.81088 0.86103 0.81636 1.90659 1.56169 1.49168 1.50120 1.48110 1.06050 1.26382 1.53183 1.22157 0.89513 0.91329 0.98837 1.21922 0.99506 0.96653 0.98319 1.21352 0.95691 0.95715 1.01371 1.22766 0.98224 0.89919 0.95073 0.94377 1.21413 0.93963 0.86381 0.94092 0.89492 1.22559 0.98582 0.92638 1.02486 1.23143 0.87982 0.96116 1.00070 1.64454 1.26013 1.02340 1.28961 1.21958 1.03094 0.89213 0.93745 1.20693 0.82668 0.86193 0.87906 1.90488 1.53917 1.86798 1.18904 1.41903 1.58661 1.06524 1.13806 1.19654 1.43709 0.85614 0.97326 0.90398 1.26049 0.95958 1.02617 0.96621 1.69673 1.44366 1.31446 1.10529 0.84922 0.78799 0.76768 0.77800 1.19448 1.19410 1.19984 0.74698 0.87535 0.87121 0.92891 0.93455 0.85811 0.85137 0.89622 0.85967 0.87020 0.91379 0.91167 0.90618 0.89430 0.91642 0.91553 0.96281 0.92184 0.86726 0.77022 0.91239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -3.53 19.25 74.32 1.43 -2.10 16 2 C -0.21 -3.52 13.34 31.12 0.42 -3.10 16 3 C -0.01 -0.09 5.70 28.79 0.16 0.08 16 4 C -0.10 -1.37 4.46 30.60 0.14 -1.23 16 5 C -0.13 -1.21 4.12 29.85 0.12 -1.09 16 6 C 0.51 10.25 7.66 87.66 0.67 10.92 16 7 O -0.58 -17.75 12.76 -3.04 -0.04 -17.79 16 8 N -0.60 -10.85 2.92 -792.83 -2.31 -13.17 16 9 C 0.10 0.81 6.34 86.01 0.55 1.36 16 10 C -0.13 -1.13 5.94 30.78 0.18 -0.94 16 11 C -0.10 -1.80 5.94 30.33 0.18 -1.62 16 12 C 0.05 1.28 1.69 45.35 0.08 1.36 16 13 H 0.04 1.05 7.83 -2.39 -0.02 1.03 16 14 C 0.15 3.71 3.20 45.95 0.15 3.86 16 15 H 0.09 2.19 8.07 -2.39 -0.02 2.17 16 16 C -0.12 -4.07 5.51 31.21 0.17 -3.90 16 17 C 0.05 2.15 5.16 86.57 0.45 2.60 16 18 N -0.49 -17.37 5.20 -864.14 -4.49 -21.87 16 19 C 0.05 1.91 5.43 85.56 0.46 2.38 16 20 C 0.44 21.85 7.40 87.66 0.65 22.50 16 21 O -0.61 -35.21 13.55 -3.08 -0.04 -35.25 16 22 N -0.57 -30.34 5.29 -306.98 -1.62 -31.97 16 23 C -0.33 -19.44 9.68 84.04 0.81 -18.63 16 24 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 25 C -0.01 -0.69 5.50 84.92 0.47 -0.22 16 26 N -0.92 -50.33 13.05 21.66 0.28 -50.05 16 27 Si 0.99 43.87 29.55 68.60 2.03 45.90 16 28 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 29 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 30 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 31 H 0.24 2.13 7.80 -4.41 -0.03 2.09 16 32 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.11 0.56 8.14 -2.38 -0.02 0.54 16 34 H 0.05 0.98 8.10 -2.39 -0.02 0.96 16 35 H 0.05 0.93 8.10 -2.39 -0.02 0.91 16 36 H 0.12 0.54 7.97 -2.39 -0.02 0.52 16 37 H 0.13 0.36 7.81 -2.39 -0.02 0.34 16 38 H 0.09 0.51 8.14 -2.39 -0.02 0.50 16 39 H 0.12 0.11 6.18 -2.39 -0.01 0.09 16 40 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 41 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.08 1.33 8.06 -2.39 -0.02 1.31 16 44 H 0.09 3.13 5.54 -2.39 -0.01 3.12 16 45 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 46 H 0.07 3.02 6.86 -2.38 -0.02 3.00 16 47 H 0.02 0.80 7.66 -2.39 -0.02 0.78 16 48 H 0.06 2.09 7.89 -2.39 -0.02 2.07 16 49 H 0.11 3.70 8.14 -2.39 -0.02 3.69 16 50 H 0.40 19.91 7.90 -92.71 -0.73 19.17 16 51 H 0.28 14.21 8.31 -92.71 -0.77 13.44 16 Total: -1.00 -80.32 406.33 1.08 -79.24 By element: Atomic # 1 Polarization: 32.55 SS G_CDS: 0.19 Total: 32.75 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: 7.09 Total: 12.20 kcal Atomic # 7 Polarization: -108.90 SS G_CDS: -8.15 Total: -117.04 kcal Atomic # 8 Polarization: -52.96 SS G_CDS: -0.08 Total: -53.04 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -80.32 1.08 -79.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733601686.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.085 kcal (2) G-P(sol) polarization free energy of solvation -80.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds