Wall clock time and date at job start Wed Apr 1 2020 04:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53009 * 109.47338 * 2 1 4 4 C 1.52995 * 109.46970 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.46648 * 179.97438 * 4 3 2 6 6 H 1.09004 * 109.47045 * 55.00351 * 5 4 3 7 7 C 1.53001 * 109.47054 * 174.99936 * 5 4 3 8 8 N 1.46494 * 109.47243 * 175.00151 * 7 5 4 9 9 C 1.36935 * 120.00226 * 179.97438 * 8 7 5 10 10 H 1.08004 * 120.00031 * 359.72908 * 9 8 7 11 11 C 1.38811 * 120.00211 * 179.97438 * 9 8 7 12 12 N 1.31616 * 119.99952 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 120.00073 * 180.02562 * 11 9 8 14 14 H 1.48491 * 109.47176 * 59.99782 * 13 11 9 15 15 H 1.48494 * 109.47097 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.46727 * 299.99907 * 13 11 9 17 17 N 1.46497 * 109.47374 * 294.99920 * 5 4 3 18 18 C 1.34779 * 119.99799 * 84.99907 * 17 5 4 19 19 O 1.21580 * 120.00037 * 0.02562 * 18 17 5 20 20 C 1.47598 * 119.99737 * 179.97438 * 18 17 5 21 21 C 1.39743 * 120.07391 * 359.73307 * 20 18 17 22 22 C 1.37675 * 119.92445 * 179.76023 * 21 20 18 23 23 C 1.39133 * 120.06993 * 0.48677 * 22 21 20 24 24 N 1.39450 * 119.92202 * 179.74025 * 23 22 21 25 25 C 1.34775 * 119.99912 * 213.56146 * 24 23 22 26 26 C 1.50695 * 119.99964 * 185.28215 * 25 24 23 27 27 O 1.21273 * 119.99847 * 5.28397 * 25 24 23 28 28 C 1.39126 * 120.15108 * 359.76298 * 23 22 21 29 29 C 1.37664 * 120.07298 * 0.02562 * 28 23 22 30 30 H 1.09006 * 109.47025 * 300.00176 * 1 2 3 31 31 H 1.09002 * 109.47030 * 60.00227 * 1 2 3 32 32 H 1.08996 * 109.47176 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47189 * 239.99633 * 2 1 3 34 34 H 1.09002 * 109.47030 * 119.99773 * 2 1 3 35 35 H 1.08997 * 109.47281 * 59.99689 * 3 2 1 36 36 H 1.08996 * 109.46489 * 299.99725 * 3 2 1 37 37 H 1.09003 * 109.47177 * 60.00493 * 4 3 2 38 38 H 1.08996 * 109.47346 * 299.99268 * 4 3 2 39 39 H 1.09004 * 109.47229 * 55.00295 * 7 5 4 40 40 H 1.09003 * 109.46972 * 295.00355 * 7 5 4 41 41 H 0.97002 * 120.00080 * 0.02562 * 8 7 5 42 42 H 0.97006 * 120.00104 * 180.02562 * 12 11 9 43 43 H 0.96999 * 119.99965 * 265.00080 * 17 5 4 44 44 H 1.07998 * 120.04222 * 359.96832 * 21 20 18 45 45 H 1.08003 * 119.96230 * 180.23029 * 22 21 20 46 46 H 0.97000 * 119.99646 * 33.56785 * 24 23 22 47 47 H 1.08998 * 109.47521 * 59.99831 * 26 25 24 48 48 H 1.09000 * 109.47121 * 180.02562 * 26 25 24 49 49 H 1.09004 * 109.47249 * 299.99998 * 26 25 24 50 50 H 1.08005 * 119.96477 * 179.97438 * 28 23 22 51 51 H 1.08003 * 120.04130 * 179.97438 * 29 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0000 6 1 3.6450 3.4245 0.8414 7 6 5.6048 2.8869 0.1264 8 7 6.1030 4.2593 0.0060 9 6 7.4468 4.5095 0.0887 10 1 8.1389 3.6957 0.2469 11 6 7.9189 5.8098 -0.0259 12 7 7.0750 6.8023 -0.2134 13 14 9.7521 6.1511 0.0861 14 1 10.4593 5.4163 -0.9932 15 1 9.9945 7.6083 -0.0655 16 1 10.2598 5.7001 1.4068 17 7 3.6930 3.5393 -1.2523 18 6 2.4757 4.1061 -1.3683 19 8 1.6990 4.0748 -0.4335 20 6 2.0860 4.7658 -2.6298 21 6 2.9800 4.8084 -3.7030 22 6 2.6115 5.4202 -4.8800 23 6 1.3544 6.0044 -4.9982 24 7 0.9863 6.6280 -6.1899 25 6 0.1811 7.7085 -6.1644 26 6 -0.3130 8.3106 -7.4545 27 8 -0.1457 8.1962 -5.1033 28 6 0.4638 5.9683 -3.9299 29 6 0.8244 5.3544 -2.7517 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9564 0.8899 36 1 1.6767 1.9563 -0.8900 37 1 3.9337 0.9285 -0.8892 38 1 3.9329 0.9289 0.8909 39 1 6.0357 2.2733 -0.6648 40 1 5.8894 2.4808 1.0971 41 1 5.4810 4.9908 -0.1314 42 1 7.4050 7.7109 -0.2938 43 1 4.3128 3.5645 -1.9980 44 1 3.9577 4.3590 -3.6104 45 1 3.3006 5.4502 -5.7111 46 1 1.3098 6.2841 -7.0373 47 1 -0.8880 7.5667 -8.0059 48 1 -0.9462 9.1703 -7.2351 49 1 0.5381 8.6306 -8.0556 50 1 -0.5112 6.4232 -4.0248 51 1 0.1328 5.3270 -1.9226 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734097314.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:00 Heat of formation + Delta-G solvation = -50.307667 kcal Electronic energy + Delta-G solvation = -30474.613631 eV Core-core repulsion = 26373.585347 eV Total energy + Delta-G solvation = -4101.028284 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.80722 -39.84948 -38.19283 -36.41922 -34.98211 -34.84555 -33.51948 -31.78380 -31.02340 -30.77946 -30.26325 -28.80019 -27.12271 -24.22858 -23.81078 -22.95759 -22.22593 -21.05574 -20.70065 -20.67271 -19.92675 -18.21402 -17.53125 -17.24338 -16.91241 -16.23933 -15.76405 -15.34677 -14.93947 -14.68549 -14.59956 -14.40758 -14.28296 -13.82570 -13.65856 -13.46792 -13.40093 -13.20311 -13.11228 -12.88979 -12.70338 -12.65222 -12.58847 -12.31212 -12.00916 -11.86692 -11.34109 -11.24331 -11.05156 -10.88679 -10.80545 -10.76197 -10.56178 -10.35545 -10.25288 -10.18060 -10.01275 -9.71405 -9.52719 -9.01498 -8.90612 -8.59674 -8.22709 -6.95336 -5.76545 -3.06892 0.80990 1.37946 2.21538 2.73499 3.13329 3.42718 3.47487 3.48858 3.55077 3.99902 4.32692 4.56408 4.75468 4.82648 4.87284 4.90211 4.91132 5.00967 5.11108 5.24812 5.29162 5.30585 5.41826 5.45091 5.48292 5.51735 5.56298 5.58941 5.87307 5.92663 5.95917 5.99942 6.01611 6.03517 6.09494 6.15774 6.20462 6.26248 6.32671 6.34498 6.43830 6.50306 6.52737 6.68799 6.74694 6.85506 7.01272 7.04198 7.68006 7.76579 7.93074 8.40762 8.60528 9.52475 10.08822 10.44214 11.45301 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.006354 B = 0.003440 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4405.775649 B = 8137.138166 C =11929.284378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C -0.113 4.113 4 C -0.126 4.126 5 C 0.138 3.862 6 H 0.088 0.912 7 C 0.144 3.856 8 N -0.731 5.731 9 C -0.244 4.244 10 H 0.070 0.930 11 C -0.011 4.011 12 N -0.929 5.929 13 Si 0.907 3.093 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.286 1.286 17 N -0.704 5.704 18 C 0.560 3.440 19 O -0.540 6.540 20 C -0.142 4.142 21 C -0.059 4.059 22 C -0.153 4.153 23 C 0.163 3.837 24 N -0.675 5.675 25 C 0.507 3.493 26 C -0.173 4.173 27 O -0.519 6.519 28 C -0.134 4.134 29 C -0.040 4.040 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.047 0.953 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.070 0.930 39 H 0.024 0.976 40 H 0.033 0.967 41 H 0.387 0.613 42 H 0.256 0.744 43 H 0.402 0.598 44 H 0.134 0.866 45 H 0.131 0.869 46 H 0.412 0.588 47 H 0.091 0.909 48 H 0.096 0.904 49 H 0.091 0.909 50 H 0.137 0.863 51 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.268 -7.295 -15.545 22.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.150 4.150 4 C -0.165 4.165 5 C 0.033 3.967 6 H 0.106 0.894 7 C 0.016 3.984 8 N -0.376 5.376 9 C -0.375 4.375 10 H 0.088 0.912 11 C -0.207 4.207 12 N -0.577 5.577 13 Si 0.738 3.262 14 H -0.213 1.213 15 H -0.217 1.217 16 H -0.213 1.213 17 N -0.355 5.355 18 C 0.347 3.653 19 O -0.419 6.419 20 C -0.146 4.146 21 C -0.078 4.078 22 C -0.173 4.173 23 C 0.068 3.932 24 N -0.320 5.320 25 C 0.296 3.704 26 C -0.232 4.232 27 O -0.393 6.393 28 C -0.154 4.154 29 C -0.060 4.060 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.041 0.959 40 H 0.051 0.949 41 H 0.221 0.779 42 H 0.066 0.934 43 H 0.237 0.763 44 H 0.151 0.849 45 H 0.148 0.852 46 H 0.248 0.752 47 H 0.110 0.890 48 H 0.115 0.885 49 H 0.110 0.890 50 H 0.154 0.846 51 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -15.908 -6.931 -14.128 22.376 hybrid contribution 1.525 0.441 -0.838 1.795 sum -14.383 -6.489 -14.967 21.748 Atomic orbital electron populations 1.21741 0.96289 1.00772 1.01890 1.21571 0.95607 0.97789 1.01281 1.21676 0.94757 0.95274 1.03313 1.21974 0.96126 0.96279 1.02115 1.21314 0.95997 0.92452 0.86894 0.89394 1.20967 0.89296 0.89373 0.98759 1.42355 1.05407 1.02044 1.87829 1.19157 0.83664 0.92476 1.42241 0.91235 1.24754 0.97608 0.95682 1.02704 1.69663 1.32924 0.99048 1.56066 0.86279 0.85211 0.76885 0.77833 1.21297 1.21718 1.21286 1.45874 1.15764 1.56828 1.17078 1.18056 0.82012 0.78043 0.87178 1.90751 1.51601 1.59581 1.39981 1.20034 0.96079 1.03788 0.94722 1.21173 0.98644 0.96339 0.91648 1.20780 0.94311 1.02991 0.99239 1.17890 0.93214 0.94931 0.87151 1.43546 1.50150 1.29956 1.08388 1.21051 0.77839 0.79232 0.92309 1.21932 1.03423 1.03026 0.94839 1.90788 1.55731 1.60122 1.32702 1.21032 1.00103 1.01283 0.92951 1.21128 0.95080 0.92811 0.96965 0.92793 0.92957 0.93383 0.92660 0.92473 0.91512 0.91686 0.92011 0.91163 0.95864 0.94909 0.77926 0.93423 0.76251 0.84851 0.85151 0.75212 0.88989 0.88494 0.89018 0.84570 0.84373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.91 37.15 0.37 -1.26 16 2 C -0.12 -1.44 5.93 -26.73 -0.16 -1.60 16 3 C -0.11 -1.57 3.82 -26.73 -0.10 -1.67 16 4 C -0.13 -1.73 4.89 -26.73 -0.13 -1.86 16 5 C 0.14 2.32 2.41 -67.93 -0.16 2.16 16 6 H 0.09 1.69 7.58 -51.93 -0.39 1.30 16 7 C 0.14 2.79 5.82 -4.04 -0.02 2.77 16 8 N -0.73 -18.12 5.43 -59.91 -0.33 -18.44 16 9 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 10 H 0.07 1.85 7.83 -52.48 -0.41 1.43 16 11 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 12 N -0.93 -28.11 13.06 55.49 0.72 -27.38 16 13 Si 0.91 22.27 29.55 -169.99 -5.02 17.24 16 14 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 15 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 16 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 17 N -0.70 -11.45 4.42 -54.83 -0.24 -11.69 16 18 C 0.56 9.55 6.33 -12.44 -0.08 9.47 16 19 O -0.54 -10.42 13.47 5.29 0.07 -10.35 16 20 C -0.14 -2.16 5.88 -104.95 -0.62 -2.77 16 21 C -0.06 -0.77 9.53 -39.22 -0.37 -1.14 16 22 C -0.15 -1.72 9.94 -39.45 -0.39 -2.12 16 23 C 0.16 1.90 6.27 -83.73 -0.53 1.37 16 24 N -0.67 -5.61 5.32 -9.86 -0.05 -5.66 16 25 C 0.51 4.80 7.67 -10.99 -0.08 4.72 16 26 C -0.17 -0.78 10.32 36.00 0.37 -0.41 16 27 O -0.52 -7.50 14.76 5.56 0.08 -7.42 16 28 C -0.13 -1.79 8.63 -39.46 -0.34 -2.13 16 29 C -0.04 -0.59 9.58 -39.23 -0.38 -0.96 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 1.04 7.85 -51.93 -0.41 0.63 16 36 H 0.06 1.00 5.64 -51.93 -0.29 0.70 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.39 10.32 7.33 -40.82 -0.30 10.02 16 42 H 0.26 7.55 8.31 -40.82 -0.34 7.22 16 43 H 0.40 6.17 6.62 -40.82 -0.27 5.90 16 44 H 0.13 1.61 6.39 -52.49 -0.34 1.27 16 45 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 46 H 0.41 1.80 8.81 -40.82 -0.36 1.44 16 47 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 48 H 0.10 0.48 8.12 -51.93 -0.42 0.06 16 49 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 50 H 0.14 1.84 6.41 -52.48 -0.34 1.50 16 51 H 0.14 2.01 7.64 -52.48 -0.40 1.61 16 LS Contribution 415.93 15.07 6.27 6.27 Total: -1.00 -35.29 415.93 -9.51 -44.80 By element: Atomic # 1 Polarization: 23.50 SS G_CDS: -8.14 Total: 15.36 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: -2.87 Total: -2.73 kcal Atomic # 7 Polarization: -63.28 SS G_CDS: 0.10 Total: -63.18 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: 0.15 Total: -17.77 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -35.29 -9.51 -44.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734097314.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.508 kcal (2) G-P(sol) polarization free energy of solvation -35.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds