Wall clock time and date at job start Wed Apr 1 2020 04:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53009 * 109.47338 * 2 1 4 4 C 1.52995 * 109.46970 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.46648 * 179.97438 * 4 3 2 6 6 H 1.09004 * 109.47045 * 55.00351 * 5 4 3 7 7 C 1.53001 * 109.47054 * 174.99936 * 5 4 3 8 8 N 1.46494 * 109.47243 * 175.00151 * 7 5 4 9 9 C 1.36935 * 120.00226 * 179.97438 * 8 7 5 10 10 H 1.08004 * 120.00031 * 359.72908 * 9 8 7 11 11 C 1.38811 * 120.00211 * 179.97438 * 9 8 7 12 12 N 1.31616 * 119.99952 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 120.00073 * 180.02562 * 11 9 8 14 14 H 1.48491 * 109.47176 * 59.99782 * 13 11 9 15 15 H 1.48494 * 109.47097 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.46727 * 299.99907 * 13 11 9 17 17 N 1.46497 * 109.47374 * 294.99920 * 5 4 3 18 18 C 1.34779 * 119.99799 * 84.99907 * 17 5 4 19 19 O 1.21580 * 120.00037 * 0.02562 * 18 17 5 20 20 C 1.47598 * 119.99737 * 179.97438 * 18 17 5 21 21 C 1.39743 * 120.07391 * 359.73307 * 20 18 17 22 22 C 1.37675 * 119.92445 * 179.76023 * 21 20 18 23 23 C 1.39133 * 120.06993 * 0.48677 * 22 21 20 24 24 N 1.39450 * 119.92202 * 179.74025 * 23 22 21 25 25 C 1.34775 * 119.99912 * 213.56146 * 24 23 22 26 26 C 1.50695 * 119.99964 * 185.28215 * 25 24 23 27 27 O 1.21273 * 119.99847 * 5.28397 * 25 24 23 28 28 C 1.39126 * 120.15108 * 359.76298 * 23 22 21 29 29 C 1.37664 * 120.07298 * 0.02562 * 28 23 22 30 30 H 1.09006 * 109.47025 * 300.00176 * 1 2 3 31 31 H 1.09002 * 109.47030 * 60.00227 * 1 2 3 32 32 H 1.08996 * 109.47176 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47189 * 239.99633 * 2 1 3 34 34 H 1.09002 * 109.47030 * 119.99773 * 2 1 3 35 35 H 1.08997 * 109.47281 * 59.99689 * 3 2 1 36 36 H 1.08996 * 109.46489 * 299.99725 * 3 2 1 37 37 H 1.09003 * 109.47177 * 60.00493 * 4 3 2 38 38 H 1.08996 * 109.47346 * 299.99268 * 4 3 2 39 39 H 1.09004 * 109.47229 * 55.00295 * 7 5 4 40 40 H 1.09003 * 109.46972 * 295.00355 * 7 5 4 41 41 H 0.97002 * 120.00080 * 0.02562 * 8 7 5 42 42 H 0.97006 * 120.00104 * 180.02562 * 12 11 9 43 43 H 0.96999 * 119.99965 * 265.00080 * 17 5 4 44 44 H 1.07998 * 120.04222 * 359.96832 * 21 20 18 45 45 H 1.08003 * 119.96230 * 180.23029 * 22 21 20 46 46 H 0.97000 * 119.99646 * 33.56785 * 24 23 22 47 47 H 1.08998 * 109.47521 * 59.99831 * 26 25 24 48 48 H 1.09000 * 109.47121 * 180.02562 * 26 25 24 49 49 H 1.09004 * 109.47249 * 299.99998 * 26 25 24 50 50 H 1.08005 * 119.96477 * 179.97438 * 28 23 22 51 51 H 1.08003 * 120.04130 * 179.97438 * 29 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0000 6 1 3.6450 3.4245 0.8414 7 6 5.6048 2.8869 0.1264 8 7 6.1030 4.2593 0.0060 9 6 7.4468 4.5095 0.0887 10 1 8.1389 3.6957 0.2469 11 6 7.9189 5.8098 -0.0259 12 7 7.0750 6.8023 -0.2134 13 14 9.7521 6.1511 0.0861 14 1 10.4593 5.4163 -0.9932 15 1 9.9945 7.6083 -0.0655 16 1 10.2598 5.7001 1.4068 17 7 3.6930 3.5393 -1.2523 18 6 2.4757 4.1061 -1.3683 19 8 1.6990 4.0748 -0.4335 20 6 2.0860 4.7658 -2.6298 21 6 2.9800 4.8084 -3.7030 22 6 2.6115 5.4202 -4.8800 23 6 1.3544 6.0044 -4.9982 24 7 0.9863 6.6280 -6.1899 25 6 0.1811 7.7085 -6.1644 26 6 -0.3130 8.3106 -7.4545 27 8 -0.1457 8.1962 -5.1033 28 6 0.4638 5.9683 -3.9299 29 6 0.8244 5.3544 -2.7517 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9564 0.8899 36 1 1.6767 1.9563 -0.8900 37 1 3.9337 0.9285 -0.8892 38 1 3.9329 0.9289 0.8909 39 1 6.0357 2.2733 -0.6648 40 1 5.8894 2.4808 1.0971 41 1 5.4810 4.9908 -0.1314 42 1 7.4050 7.7109 -0.2938 43 1 4.3128 3.5645 -1.9980 44 1 3.9577 4.3590 -3.6104 45 1 3.3006 5.4502 -5.7111 46 1 1.3098 6.2841 -7.0373 47 1 -0.8880 7.5667 -8.0059 48 1 -0.9462 9.1703 -7.2351 49 1 0.5381 8.6306 -8.0556 50 1 -0.5112 6.4232 -4.0248 51 1 0.1328 5.3270 -1.9226 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734097314.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:59 Heat of formation + Delta-G solvation = -74.131372 kcal Electronic energy + Delta-G solvation = -30475.646705 eV Core-core repulsion = 26373.585347 eV Total energy + Delta-G solvation = -4102.061358 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.75607 -41.04498 -39.25223 -37.81165 -36.26698 -35.88085 -35.12614 -33.22675 -32.18984 -31.96291 -31.37070 -29.62545 -28.61738 -25.90340 -24.86829 -24.00228 -23.74838 -22.17361 -21.79272 -21.76407 -21.15336 -19.40692 -19.01712 -18.38440 -18.03147 -17.51164 -16.75515 -16.55546 -16.47434 -15.95494 -15.81412 -15.47729 -15.38517 -15.17626 -15.08739 -14.72561 -14.50278 -14.43548 -14.17570 -14.00168 -13.81236 -13.67250 -13.44697 -13.27640 -13.14410 -13.01827 -12.85982 -12.75287 -12.51546 -12.31148 -12.17090 -11.99891 -11.85222 -11.83828 -11.51418 -11.40188 -11.33656 -11.09866 -10.96255 -10.82214 -10.05424 -9.95072 -9.21795 -9.00188 -7.92308 -5.22532 -0.26559 0.34351 1.41900 1.48561 1.51517 1.57653 1.92272 2.06834 2.25538 2.57213 2.86854 3.41468 3.61703 3.68326 3.82260 3.84366 3.92463 4.04709 4.09157 4.26070 4.26542 4.32316 4.34524 4.37861 4.46079 4.55665 4.56904 4.61962 4.66701 4.85699 4.92527 4.94944 4.95134 5.00313 5.03906 5.09269 5.10721 5.15266 5.19259 5.23670 5.31437 5.33997 5.38242 5.43306 5.51734 5.59238 5.65492 5.87000 6.27099 6.38080 6.61136 7.08456 7.28024 7.34628 8.08593 8.32271 9.30173 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.006354 B = 0.003440 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4405.775649 B = 8137.138166 C =11929.284378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C -0.106 4.106 4 C -0.116 4.116 5 C 0.147 3.853 6 H 0.056 0.944 7 C 0.146 3.854 8 N -0.744 5.744 9 C -0.244 4.244 10 H 0.080 0.920 11 C -0.074 4.074 12 N -0.968 5.968 13 Si 0.974 3.026 14 H -0.273 1.273 15 H -0.300 1.300 16 H -0.281 1.281 17 N -0.700 5.700 18 C 0.557 3.443 19 O -0.572 6.572 20 C -0.165 4.165 21 C -0.061 4.061 22 C -0.145 4.145 23 C 0.169 3.831 24 N -0.660 5.660 25 C 0.501 3.499 26 C -0.162 4.162 27 O -0.577 6.577 28 C -0.144 4.144 29 C -0.053 4.053 30 H 0.045 0.955 31 H 0.044 0.956 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.041 0.959 36 H 0.047 0.953 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.043 0.957 40 H 0.037 0.963 41 H 0.373 0.627 42 H 0.249 0.751 43 H 0.407 0.593 44 H 0.144 0.856 45 H 0.168 0.832 46 H 0.434 0.566 47 H 0.121 0.879 48 H 0.090 0.910 49 H 0.118 0.882 50 H 0.131 0.869 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.106 -8.906 -18.275 24.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.157 4.157 3 C -0.144 4.144 4 C -0.155 4.155 5 C 0.042 3.958 6 H 0.075 0.925 7 C 0.019 3.981 8 N -0.387 5.387 9 C -0.375 4.375 10 H 0.098 0.902 11 C -0.266 4.266 12 N -0.619 5.619 13 Si 0.803 3.197 14 H -0.199 1.199 15 H -0.226 1.226 16 H -0.208 1.208 17 N -0.350 5.350 18 C 0.345 3.655 19 O -0.454 6.454 20 C -0.169 4.169 21 C -0.080 4.080 22 C -0.165 4.165 23 C 0.073 3.927 24 N -0.307 5.307 25 C 0.293 3.707 26 C -0.220 4.220 27 O -0.455 6.455 28 C -0.165 4.165 29 C -0.072 4.072 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.098 0.902 38 H 0.103 0.897 39 H 0.061 0.939 40 H 0.055 0.945 41 H 0.205 0.795 42 H 0.058 0.942 43 H 0.244 0.756 44 H 0.162 0.838 45 H 0.185 0.815 46 H 0.275 0.725 47 H 0.139 0.861 48 H 0.109 0.891 49 H 0.136 0.864 50 H 0.149 0.851 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -14.722 -8.617 -16.914 24.022 hybrid contribution 1.102 0.922 -0.028 1.437 sum -13.619 -7.695 -16.942 23.060 Atomic orbital electron populations 1.21739 0.95951 1.01816 1.01171 1.21537 0.95930 0.95904 1.02376 1.21554 0.94839 0.96686 1.01272 1.21908 0.95866 0.94046 1.03648 1.21158 0.94264 0.94173 0.86232 0.92534 1.21122 0.90729 0.86884 0.99372 1.42545 1.04538 1.03802 1.87798 1.19597 0.84977 0.92712 1.40232 0.90199 1.25566 1.01812 0.95692 1.03574 1.69843 1.34759 0.99037 1.58240 0.85216 0.80293 0.76081 0.78153 1.19867 1.22648 1.20754 1.45801 1.15643 1.56681 1.16924 1.18396 0.81803 0.77659 0.87595 1.90725 1.52507 1.60861 1.41277 1.19953 0.96938 1.05321 0.94717 1.21354 0.98596 0.96358 0.91686 1.21116 0.94446 1.01399 0.99491 1.18018 0.92934 0.93995 0.87802 1.43537 1.49580 1.29324 1.08241 1.22064 0.76703 0.78710 0.93272 1.21967 1.04512 1.03235 0.92331 1.90775 1.57718 1.61849 1.35196 1.21038 1.00534 1.01500 0.93378 1.21080 0.95072 0.93736 0.97336 0.93604 0.93687 0.91389 0.91405 0.91385 0.93999 0.93442 0.90170 0.89723 0.93874 0.94478 0.79488 0.94233 0.75631 0.83835 0.81469 0.72532 0.86085 0.89071 0.86354 0.85139 0.85680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 9.91 71.98 0.71 -2.43 16 2 C -0.12 -2.62 5.93 30.60 0.18 -2.43 16 3 C -0.11 -2.97 3.82 30.60 0.12 -2.85 16 4 C -0.12 -3.08 4.89 30.59 0.15 -2.93 16 5 C 0.15 4.99 2.41 44.99 0.11 5.10 16 6 H 0.06 2.29 7.58 -2.38 -0.02 2.28 16 7 C 0.15 5.53 5.82 86.38 0.50 6.03 16 8 N -0.74 -36.98 5.43 -343.45 -1.87 -38.84 16 9 C -0.24 -13.26 9.99 84.03 0.84 -12.42 16 10 H 0.08 4.11 7.83 -2.91 -0.02 4.08 16 11 C -0.07 -4.21 5.50 84.86 0.47 -3.75 16 12 N -0.97 -59.61 13.06 21.65 0.28 -59.33 16 13 Si 0.97 45.68 29.55 68.60 2.03 47.71 16 14 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 15 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 16 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 17 N -0.70 -23.27 4.42 -445.63 -1.97 -25.24 16 18 C 0.56 20.03 6.33 86.71 0.55 20.58 16 19 O -0.57 -23.76 13.47 -3.97 -0.05 -23.81 16 20 C -0.17 -5.24 5.88 -20.08 -0.12 -5.35 16 21 C -0.06 -1.56 9.53 22.50 0.21 -1.35 16 22 C -0.14 -2.98 9.94 22.35 0.22 -2.76 16 23 C 0.17 3.75 6.27 38.36 0.24 4.00 16 24 N -0.66 -9.49 5.32 -303.50 -1.61 -11.11 16 25 C 0.50 8.78 7.67 87.66 0.67 9.46 16 26 C -0.16 -0.99 10.32 71.23 0.74 -0.25 16 27 O -0.58 -16.95 14.76 -3.01 -0.04 -16.99 16 28 C -0.14 -4.02 8.63 22.35 0.19 -3.83 16 29 C -0.05 -1.65 9.58 22.50 0.22 -1.43 16 30 H 0.04 1.02 8.14 -2.38 -0.02 1.00 16 31 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.04 1.37 7.85 -2.39 -0.02 1.35 16 36 H 0.05 1.50 5.64 -2.39 -0.01 1.49 16 37 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 40 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.37 20.43 7.33 -92.71 -0.68 19.75 16 42 H 0.25 15.02 8.31 -92.70 -0.77 14.25 16 43 H 0.41 12.50 6.62 -92.71 -0.61 11.88 16 44 H 0.14 3.32 6.39 -2.91 -0.02 3.30 16 45 H 0.17 2.19 8.06 -2.91 -0.02 2.17 16 46 H 0.43 2.22 8.81 -92.71 -0.82 1.40 16 47 H 0.12 0.09 8.14 -2.39 -0.02 0.07 16 48 H 0.09 0.73 8.12 -2.39 -0.02 0.71 16 49 H 0.12 0.15 8.14 -2.39 -0.02 0.14 16 50 H 0.13 3.75 6.41 -2.91 -0.02 3.73 16 51 H 0.13 4.09 7.64 -2.91 -0.02 4.07 16 Total: -1.00 -79.87 415.93 1.62 -78.26 By element: Atomic # 1 Polarization: 47.12 SS G_CDS: -1.15 Total: 45.97 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: 6.00 Total: 3.39 kcal Atomic # 7 Polarization: -129.35 SS G_CDS: -5.17 Total: -134.52 kcal Atomic # 8 Polarization: -40.71 SS G_CDS: -0.10 Total: -40.80 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -79.87 1.62 -78.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734097314.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.125 kcal (2) G-P(sol) polarization free energy of solvation -79.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds