Wall clock time and date at job start Wed Apr 1 2020 05:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32873 * 1 3 3 C 1.47119 * 119.99843 * 2 1 4 4 C 1.50700 * 120.00028 * 0.02562 * 3 2 1 5 5 C 1.32873 * 119.99843 * 179.97438 * 3 2 1 6 6 C 1.50705 * 119.99618 * 186.55276 * 5 3 2 7 7 C 1.50701 * 109.46965 * 125.99773 * 6 5 3 8 8 O 1.21281 * 120.00048 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00148 * 179.97438 * 7 6 5 10 10 C 1.46497 * 120.00263 * 179.72062 * 9 7 6 11 11 C 1.53001 * 109.47204 * 180.27400 * 10 9 7 12 12 C 1.52998 * 117.44217 * 177.24504 * 11 10 9 13 13 H 1.08997 * 119.52576 * 220.94292 * 12 11 10 14 14 C 1.54384 * 118.13024 * 15.97964 * 12 11 10 15 15 N 1.48560 * 104.59268 * 87.22717 * 14 12 11 16 16 C 1.46904 * 110.99990 * 200.96035 * 15 14 12 17 17 C 1.50698 * 109.47338 * 190.00331 * 16 15 14 18 18 O 1.21295 * 119.99549 * 359.97438 * 17 16 15 19 19 N 1.34774 * 120.00215 * 179.97438 * 17 16 15 20 20 C 1.37100 * 120.00250 * 179.97438 * 19 17 16 21 21 H 1.07996 * 119.99586 * 0.02562 * 20 19 17 22 22 C 1.38948 * 119.99637 * 180.02562 * 20 19 17 23 23 N 1.31405 * 120.00377 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99167 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47093 * 60.00127 * 24 22 20 26 26 H 1.48503 * 109.46525 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47211 * 299.99682 * 24 22 20 28 28 C 1.48558 * 104.22610 * 320.51720 * 15 14 12 29 29 C 1.52999 * 117.44252 * 246.47570 * 11 10 9 30 30 H 1.08996 * 119.52794 * 140.61852 * 29 11 10 31 31 H 1.08000 * 120.00226 * 0.02562 * 1 2 3 32 32 H 1.07991 * 120.00160 * 180.02562 * 1 2 3 33 33 H 1.08000 * 120.00226 * 179.97438 * 2 1 3 34 34 H 1.09003 * 109.46997 * 206.13644 * 4 3 2 35 35 H 1.09000 * 109.47255 * 326.13454 * 4 3 2 36 36 H 1.08998 * 109.47416 * 86.13600 * 4 3 2 37 37 H 1.07994 * 120.00120 * 6.54632 * 5 3 2 38 38 H 1.08994 * 109.47585 * 5.99353 * 6 5 3 39 39 H 1.09002 * 109.46664 * 245.98937 * 6 5 3 40 40 H 0.96997 * 119.99732 * 359.97438 * 9 7 6 41 41 H 1.08999 * 109.46973 * 300.27682 * 10 9 7 42 42 H 1.09001 * 109.46811 * 60.27532 * 10 9 7 43 43 H 1.08995 * 115.51596 * 31.82844 * 11 10 9 44 44 H 1.08995 * 110.41037 * 206.00542 * 14 12 11 45 45 H 1.08997 * 110.40688 * 328.44985 * 14 12 11 46 46 H 1.09010 * 109.46809 * 310.00368 * 16 15 14 47 47 H 1.08996 * 109.46946 * 70.00184 * 16 15 14 48 48 H 0.97005 * 119.99632 * 0.02562 * 19 17 16 49 49 H 0.97006 * 119.99726 * 180.02562 * 23 22 20 50 50 H 1.08996 * 110.41255 * 158.26191 * 28 15 14 51 51 H 1.08997 * 110.41216 * 280.58856 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2741 0.0000 4 6 1.3108 2.5792 0.0006 5 6 3.3930 1.2741 0.0005 6 6 4.1464 2.5708 0.1495 7 6 5.1203 2.4573 1.2939 8 8 5.1950 1.4253 1.9265 9 7 5.9084 3.5026 1.6143 10 6 6.8508 3.3944 2.7307 11 6 7.6123 4.7125 2.8850 12 6 8.6040 4.8222 4.0449 13 1 8.6605 5.7480 4.6175 14 6 9.0551 3.5210 4.7424 15 7 10.2175 3.0523 3.9448 16 6 10.4536 1.6172 4.1515 17 6 11.7711 1.2302 3.5306 18 8 12.4467 2.0676 2.9705 19 7 12.1987 -0.0461 3.5977 20 6 13.3970 -0.3983 3.0324 21 1 13.9985 0.3472 2.5337 22 6 13.8374 -1.7143 3.1011 23 7 13.1052 -2.6215 3.7075 24 14 15.4706 -2.1938 2.3314 25 1 16.5645 -1.4157 2.9663 26 1 15.7095 -3.6445 2.5410 27 1 15.4363 -1.9026 0.8757 28 6 9.8309 3.3310 2.5377 29 6 9.1143 4.6972 2.5944 30 1 9.5688 5.5385 2.0712 31 1 -0.5400 0.9353 -0.0004 32 1 -0.5400 -0.9352 0.0004 33 1 1.8688 -0.9353 0.0004 34 1 1.9279 3.3553 -0.4522 35 1 0.3899 2.4673 -0.5717 36 1 1.0695 2.8590 1.0260 37 1 3.9330 0.3449 -0.1057 38 1 3.4429 3.3789 0.3498 39 1 4.6905 2.7826 -0.7710 40 1 5.8490 4.3279 1.1081 41 1 6.3035 3.1813 3.6489 42 1 7.5569 2.5878 2.5331 43 1 7.0574 5.6100 2.6118 44 1 9.3566 3.7253 5.7698 45 1 8.2554 2.7808 4.7200 46 1 10.4788 1.4034 5.2202 47 1 9.6507 1.0461 3.6855 48 1 11.6581 -0.7158 4.0453 49 1 13.4130 -3.5401 3.7557 50 1 10.7164 3.3921 1.9052 51 1 9.1543 2.5598 2.1696 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734165116.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:23 Heat of formation + Delta-G solvation = -21.178352 kcal Electronic energy + Delta-G solvation = -29521.713637 eV Core-core repulsion = 25421.948495 eV Total energy + Delta-G solvation = -4099.765142 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.61640 -40.62984 -39.81987 -37.83897 -36.38711 -35.84963 -34.74865 -33.43349 -33.27686 -30.24762 -29.46467 -29.37935 -28.22644 -26.94984 -26.37232 -23.68213 -22.45937 -21.33175 -21.28577 -20.88651 -20.27083 -19.89020 -18.79606 -18.13203 -17.90265 -17.56247 -17.06922 -16.66965 -16.65051 -16.29676 -16.23171 -15.85001 -15.48811 -15.18837 -14.94955 -14.74549 -14.69523 -14.35127 -14.15291 -13.93438 -13.76188 -13.49570 -13.42110 -13.22272 -13.15538 -12.96089 -12.59269 -12.54468 -12.46161 -12.32800 -12.31683 -12.14856 -11.95850 -11.75198 -11.51378 -11.39991 -11.24419 -10.97993 -10.81203 -10.35382 -10.10755 -10.04302 -9.36032 -9.13599 -8.48576 -5.98111 0.40833 1.37778 1.38817 1.50713 1.62613 1.97707 2.01353 2.25258 2.29082 2.62090 2.77329 3.17098 3.33449 3.44770 3.60504 3.70808 3.86736 3.91984 4.00853 4.01329 4.12287 4.19565 4.28587 4.31933 4.35474 4.42102 4.45088 4.46397 4.51767 4.58318 4.62240 4.67972 4.70409 4.80203 4.89176 4.90088 5.01189 5.11520 5.12964 5.20110 5.22394 5.37658 5.43267 5.46271 5.58447 5.77618 5.79061 5.84990 6.03672 6.03769 6.56156 6.57252 7.09576 7.27131 7.52387 8.08095 8.68821 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009613 B = 0.002061 C = 0.001769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2912.053116 B =13583.339300 C =15825.319225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.149 4.149 3 C -0.107 4.107 4 C -0.124 4.124 5 C -0.147 4.147 6 C -0.105 4.105 7 C 0.508 3.492 8 O -0.592 6.592 9 N -0.712 5.712 10 C 0.138 3.862 11 C -0.110 4.110 12 C -0.141 4.141 13 H 0.149 0.851 14 C 0.049 3.951 15 N -0.503 5.503 16 C 0.046 3.954 17 C 0.443 3.557 18 O -0.614 6.614 19 N -0.575 5.575 20 C -0.334 4.334 21 H 0.080 0.920 22 C -0.016 4.016 23 N -0.922 5.922 24 Si 0.996 3.004 25 H -0.270 1.270 26 H -0.270 1.270 27 H -0.271 1.271 28 C 0.060 3.940 29 C -0.158 4.158 30 H 0.134 0.866 31 H 0.116 0.884 32 H 0.111 0.889 33 H 0.103 0.897 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.134 0.866 39 H 0.128 0.872 40 H 0.421 0.579 41 H 0.066 0.934 42 H 0.043 0.957 43 H 0.160 0.840 44 H 0.098 0.902 45 H 0.047 0.953 46 H 0.110 0.890 47 H 0.058 0.942 48 H 0.394 0.606 49 H 0.278 0.722 50 H 0.060 0.940 51 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.846 16.040 -5.570 31.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.167 4.167 3 C -0.107 4.107 4 C -0.180 4.180 5 C -0.166 4.166 6 C -0.144 4.144 7 C 0.296 3.704 8 O -0.472 6.472 9 N -0.365 5.365 10 C 0.014 3.986 11 C -0.129 4.129 12 C -0.160 4.160 13 H 0.166 0.834 14 C -0.078 4.078 15 N -0.227 5.227 16 C -0.086 4.086 17 C 0.230 3.770 18 O -0.499 6.499 19 N -0.213 5.213 20 C -0.463 4.463 21 H 0.098 0.902 22 C -0.215 4.215 23 N -0.563 5.563 24 Si 0.819 3.181 25 H -0.195 1.195 26 H -0.194 1.194 27 H -0.196 1.196 28 C -0.067 4.067 29 C -0.177 4.177 30 H 0.151 0.849 31 H 0.134 0.866 32 H 0.129 0.871 33 H 0.121 0.879 34 H 0.106 0.894 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.110 0.890 38 H 0.152 0.848 39 H 0.145 0.855 40 H 0.258 0.742 41 H 0.084 0.916 42 H 0.061 0.939 43 H 0.177 0.823 44 H 0.116 0.884 45 H 0.066 0.934 46 H 0.128 0.872 47 H 0.076 0.924 48 H 0.228 0.772 49 H 0.087 0.913 50 H 0.079 0.921 51 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -25.784 15.921 -5.288 30.761 hybrid contribution 0.367 -1.636 -0.366 1.716 sum -25.416 14.285 -5.654 29.699 Atomic orbital electron populations 1.24633 0.95072 1.03273 0.97709 1.22008 0.96198 0.96192 1.02311 1.20851 0.93785 0.95540 1.00522 1.20986 1.00724 0.93367 1.02912 1.22770 0.94479 0.97916 1.01415 1.20821 0.97727 0.98474 0.97340 1.21263 0.81181 0.82643 0.85339 1.90726 1.70105 1.31268 1.55121 1.45829 1.39120 1.17112 1.34478 1.20916 0.90998 0.96872 0.89770 1.22692 0.90040 0.98821 1.01319 1.23498 1.02591 0.99586 0.90352 0.83359 1.22825 0.90817 0.95439 0.98728 1.65261 1.37739 1.13827 1.05887 1.21891 0.94070 0.90345 1.02272 1.20659 0.89369 0.82412 0.84576 1.90469 1.59676 1.50669 1.49130 1.41946 1.20032 1.08384 1.50920 1.19641 0.97801 0.94777 1.34123 0.90202 1.26109 1.03036 0.94859 0.97533 1.69681 1.39814 1.03401 1.43398 0.84949 0.77155 0.77448 0.78531 1.19517 1.19409 1.19649 1.22585 0.97817 0.95889 0.90456 1.23470 0.95547 0.97756 1.00953 0.84857 0.86620 0.87112 0.87891 0.89425 0.90355 0.91014 0.89039 0.84815 0.85463 0.74154 0.91589 0.93878 0.82273 0.88379 0.93435 0.87220 0.92373 0.77200 0.91277 0.92147 0.94613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.10 14.11 66.64 0.94 -1.16 16 2 C -0.15 -2.50 9.83 23.43 0.23 -2.27 16 3 C -0.11 -1.72 5.98 -18.71 -0.11 -1.83 16 4 C -0.12 -1.13 8.60 71.24 0.61 -0.52 16 5 C -0.15 -2.74 8.45 24.51 0.21 -2.54 16 6 C -0.10 -1.35 5.75 29.10 0.17 -1.18 16 7 C 0.51 10.74 7.82 87.66 0.69 11.43 16 8 O -0.59 -19.51 16.03 -3.03 -0.05 -19.56 16 9 N -0.71 -11.09 5.56 -463.06 -2.57 -13.67 16 10 C 0.14 2.78 4.55 86.38 0.39 3.17 16 11 C -0.11 -1.63 5.79 -10.79 -0.06 -1.69 16 12 C -0.14 -2.60 7.10 -9.89 -0.07 -2.67 16 13 H 0.15 2.02 8.14 -2.39 -0.02 2.00 16 14 C 0.05 1.21 5.99 86.45 0.52 1.73 16 15 N -0.50 -17.43 4.98 -886.04 -4.41 -21.84 16 16 C 0.05 1.77 5.32 85.56 0.45 2.23 16 17 C 0.44 22.59 7.63 87.66 0.67 23.26 16 18 O -0.61 -35.65 14.80 -3.08 -0.05 -35.70 16 19 N -0.58 -31.40 5.29 -306.99 -1.62 -33.02 16 20 C -0.33 -19.78 9.68 84.04 0.81 -18.97 16 21 H 0.08 4.99 7.16 -2.91 -0.02 4.97 16 22 C -0.02 -0.88 5.50 84.93 0.47 -0.42 16 23 N -0.92 -51.89 13.05 21.66 0.28 -51.61 16 24 Si 1.00 44.40 29.55 68.60 2.03 46.43 16 25 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 26 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 27 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 28 C 0.06 1.97 5.41 86.45 0.47 2.44 16 29 C -0.16 -3.44 7.10 -9.90 -0.07 -3.52 16 30 H 0.13 2.55 8.14 -2.39 -0.02 2.53 16 31 H 0.12 1.05 6.25 -2.91 -0.02 1.03 16 32 H 0.11 1.11 8.06 -2.92 -0.02 1.08 16 33 H 0.10 1.87 8.06 -2.91 -0.02 1.85 16 34 H 0.09 0.46 6.21 -2.39 -0.01 0.45 16 35 H 0.08 0.56 6.64 -2.39 -0.02 0.54 16 36 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.09 2.15 8.05 -2.91 -0.02 2.13 16 38 H 0.13 0.87 5.64 -2.39 -0.01 0.86 16 39 H 0.13 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.42 3.01 8.43 -92.71 -0.78 2.23 16 41 H 0.07 1.44 7.98 -2.39 -0.02 1.42 16 42 H 0.04 1.20 5.23 -2.39 -0.01 1.19 16 43 H 0.16 1.13 8.08 -2.39 -0.02 1.12 16 44 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 45 H 0.05 1.17 6.69 -2.39 -0.02 1.15 16 46 H 0.11 3.76 8.08 -2.38 -0.02 3.74 16 47 H 0.06 2.15 7.77 -2.39 -0.02 2.13 16 48 H 0.39 20.66 7.90 -92.70 -0.73 19.93 16 49 H 0.28 14.63 8.31 -92.70 -0.77 13.86 16 50 H 0.06 2.44 7.23 -2.39 -0.02 2.43 16 51 H 0.04 1.22 5.42 -2.39 -0.01 1.21 16 Total: -1.00 -82.09 413.06 -0.63 -82.72 By element: Atomic # 1 Polarization: 39.29 SS G_CDS: -0.55 Total: 38.74 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: 6.31 Total: 7.50 kcal Atomic # 7 Polarization: -111.81 SS G_CDS: -8.32 Total: -120.14 kcal Atomic # 8 Polarization: -55.17 SS G_CDS: -0.09 Total: -55.26 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -82.09 -0.63 -82.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734165116.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.542 kcal (2) G-P(sol) polarization free energy of solvation -82.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds