Wall clock time and date at job start Wed Apr 1 2020 05:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47239 * 2 1 4 4 H 1.09001 * 109.47388 * 54.99796 * 3 2 1 5 5 C 1.53003 * 109.46884 * 294.99969 * 3 2 1 6 6 N 1.46499 * 109.46945 * 174.99750 * 3 2 1 7 7 N 1.39936 * 125.75305 * 60.02678 * 6 3 2 8 8 C 1.30443 * 108.89475 * 179.97438 * 7 6 3 9 9 C 1.41293 * 108.02669 * 359.97438 * 8 7 6 10 10 C 1.47427 * 126.41546 * 180.02562 * 9 8 7 11 11 O 1.21606 * 119.99858 * 234.65213 * 10 9 8 12 12 N 1.34780 * 120.00052 * 54.65612 * 10 9 8 13 13 C 1.47428 * 125.64411 * 4.94043 * 12 10 9 14 14 C 1.54906 * 104.82811 * 204.08996 * 13 12 10 15 15 C 1.55157 * 101.58476 * 322.99553 * 14 13 12 16 16 O 1.42907 * 110.71978 * 277.13591 * 15 14 13 17 17 C 1.50699 * 110.72446 * 154.04365 * 15 14 13 18 18 H 1.08003 * 119.99860 * 359.97438 * 17 15 14 19 19 C 1.37872 * 120.00083 * 179.97438 * 17 15 14 20 20 N 1.31509 * 120.00650 * 359.97438 * 19 17 15 21 21 Si 1.86810 * 119.99678 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47150 * 90.00252 * 21 19 17 23 23 H 1.48500 * 109.46830 * 209.99941 * 21 19 17 24 24 H 1.48496 * 109.47184 * 329.99786 * 21 19 17 25 25 C 1.47020 * 125.64821 * 184.63044 * 12 10 9 26 26 C 1.34257 * 125.75479 * 239.71209 * 6 3 2 27 27 C 1.50705 * 126.29119 * 0.02562 * 26 6 3 28 28 C 1.52996 * 117.49980 * 196.07204 * 27 26 6 29 29 C 1.52995 * 117.49938 * 127.44826 * 27 26 6 30 30 H 1.09000 * 109.46935 * 300.00702 * 1 2 3 31 31 H 1.09004 * 109.47110 * 59.99962 * 1 2 3 32 32 H 1.08995 * 109.47529 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46935 * 239.99298 * 2 1 3 34 34 H 1.08998 * 109.46302 * 119.99737 * 2 1 3 35 35 H 1.08991 * 109.47732 * 59.99966 * 5 3 2 36 36 H 1.09003 * 109.46951 * 180.02562 * 5 3 2 37 37 H 1.09001 * 109.47003 * 299.99529 * 5 3 2 38 38 H 1.08005 * 125.98615 * 179.97438 * 8 7 6 39 39 H 1.08996 * 110.36704 * 322.92921 * 13 12 10 40 40 H 1.08998 * 110.36386 * 85.14913 * 13 12 10 41 41 H 1.09000 * 111.00666 * 81.06646 * 14 13 12 42 42 H 1.08997 * 111.00656 * 204.91820 * 14 13 12 43 43 H 0.96698 * 114.00274 * 179.97438 * 16 15 14 44 44 H 0.97000 * 120.00697 * 179.97438 * 20 19 17 45 45 H 1.08993 * 109.88473 * 298.39922 * 25 12 10 46 46 H 1.08998 * 109.87872 * 59.56380 * 25 12 10 47 47 H 1.09002 * 115.55019 * 341.78103 * 27 26 6 48 48 H 1.09002 * 117.49806 * 359.97438 * 28 27 26 49 49 H 1.09004 * 117.49944 * 145.02175 * 28 27 26 50 50 H 1.09002 * 117.49990 * 214.98133 * 29 27 26 51 51 H 1.08996 * 117.50032 * 359.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6353 2.1265 -1.3074 6 7 3.5001 1.4441 0.1204 7 7 4.3951 0.8494 -0.7759 8 6 5.6126 1.0497 -0.3526 9 6 5.5416 1.7916 0.8478 10 6 6.6815 2.2405 1.6679 11 8 6.7304 1.9552 2.8491 12 7 7.6694 2.9670 1.1086 13 6 7.6878 3.4687 -0.2775 14 6 9.1885 3.6624 -0.6092 15 6 9.7437 4.1736 0.7464 16 8 9.5293 5.5799 0.8826 17 6 11.2081 3.8442 0.8812 18 1 11.7187 3.3189 0.0876 19 6 11.8960 4.2133 2.0176 20 7 11.2745 4.8534 2.9838 21 14 13.7110 3.8042 2.1849 22 1 14.5225 4.9182 1.6321 23 1 14.0451 3.6128 3.6191 24 1 14.0083 2.5565 1.4366 25 6 8.9042 3.3958 1.7817 26 6 4.2053 2.0217 1.1062 27 6 3.6414 2.7794 2.2805 28 6 4.6010 3.6679 3.0746 29 6 4.0961 2.3560 3.6786 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8900 35 1 0.5491 2.1252 -1.3970 36 1 1.9990 3.1540 -1.3076 37 1 2.0700 1.5874 -2.1492 38 1 6.5165 0.7083 -0.8351 39 1 7.2415 2.7376 -0.9515 40 1 7.1573 4.4186 -0.3441 41 1 9.6519 2.7164 -0.8894 42 1 9.3224 4.4083 -1.3925 43 1 9.8581 5.9493 1.7136 44 1 11.7584 5.1128 3.7835 45 1 8.6614 4.0415 2.6256 46 1 9.4599 2.5240 2.1272 47 1 2.6131 3.1231 2.1683 48 1 5.6403 3.7040 2.7479 49 1 4.2041 4.5965 3.4849 50 1 3.3671 2.4215 4.4863 51 1 4.8027 1.5291 3.7492 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592846607.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:56:08 Heat of formation + Delta-G solvation = 17.504183 kcal Electronic energy + Delta-G solvation = -32095.558397 eV Core-core repulsion = 27997.470655 eV Total energy + Delta-G solvation = -4098.087742 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.55837 -39.13066 -37.48008 -36.65737 -36.37884 -34.20285 -32.14233 -31.84221 -30.35503 -29.76227 -29.06776 -27.72171 -25.58240 -24.81420 -23.72359 -22.71000 -22.32960 -22.15486 -20.79291 -19.59030 -19.37945 -18.36996 -17.42657 -17.13980 -16.31041 -15.59231 -15.40536 -15.25962 -14.89037 -14.73680 -14.63024 -14.32234 -14.13991 -13.87209 -13.47749 -13.17343 -13.08273 -12.91957 -12.81030 -12.58851 -12.23100 -12.09738 -12.02189 -11.62704 -11.58491 -11.45077 -11.40940 -11.18266 -11.11124 -11.04049 -10.84996 -10.77463 -10.70558 -10.57487 -10.47580 -10.28083 -10.12861 -9.37246 -9.26028 -9.16902 -8.64741 -8.37730 -8.25084 -7.78105 -6.27725 -4.36004 1.68659 2.28829 2.49490 3.21977 3.29707 3.32347 3.39251 3.82232 4.00198 4.16520 4.28367 4.34593 4.47339 4.60589 4.78673 4.86290 4.90783 4.96919 4.99205 5.05996 5.12171 5.15149 5.27979 5.38710 5.46776 5.49320 5.60547 5.61027 5.62883 5.69404 5.81013 5.82699 5.89491 5.90628 5.91828 6.01002 6.13259 6.25367 6.31735 6.45198 6.54692 6.57155 6.81059 6.88967 6.92244 7.05821 7.30095 7.41252 7.68156 7.75419 8.02371 8.29757 8.66640 8.84364 9.33008 9.46333 10.79964 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020659 B = 0.002773 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.991938 B =10095.984076 C =10599.713187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.131 4.131 3 C 0.158 3.842 4 H 0.100 0.900 5 C -0.162 4.162 6 N -0.356 5.356 7 N -0.296 5.296 8 C 0.082 3.918 9 C -0.276 4.276 10 C 0.600 3.400 11 O -0.547 6.547 12 N -0.604 5.604 13 C 0.105 3.895 14 C -0.119 4.119 15 C 0.249 3.751 16 O -0.587 6.587 17 C -0.536 4.536 18 H 0.067 0.933 19 C 0.070 3.930 20 N -0.896 5.896 21 Si 0.903 3.097 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.272 1.272 25 C 0.103 3.897 26 C 0.169 3.831 27 C -0.125 4.125 28 C -0.157 4.157 29 C -0.147 4.147 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.187 0.813 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.386 0.614 44 H 0.271 0.729 45 H 0.064 0.936 46 H 0.065 0.935 47 H 0.112 0.888 48 H 0.114 0.886 49 H 0.096 0.904 50 H 0.094 0.906 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.132 -5.187 -5.009 21.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.169 4.169 3 C 0.057 3.943 4 H 0.118 0.882 5 C -0.220 4.220 6 N -0.136 5.136 7 N -0.115 5.115 8 C -0.105 4.105 9 C -0.291 4.291 10 C 0.388 3.612 11 O -0.427 6.427 12 N -0.336 5.336 13 C -0.018 4.018 14 C -0.157 4.157 15 C 0.208 3.792 16 O -0.397 6.397 17 C -0.574 4.574 18 H 0.085 0.915 19 C -0.132 4.132 20 N -0.535 5.535 21 Si 0.730 3.270 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.197 1.197 25 C -0.018 4.018 26 C 0.039 3.961 27 C -0.145 4.145 28 C -0.195 4.195 29 C -0.184 4.184 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.080 0.920 37 H 0.091 0.909 38 H 0.204 0.796 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.238 0.762 44 H 0.081 0.919 45 H 0.083 0.917 46 H 0.084 0.916 47 H 0.130 0.870 48 H 0.132 0.868 49 H 0.115 0.885 50 H 0.112 0.888 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -21.265 -5.913 -5.718 22.800 hybrid contribution 1.725 0.238 1.260 2.150 sum -19.540 -5.675 -4.458 20.830 Atomic orbital electron populations 1.21802 0.94447 1.02447 1.02170 1.21847 0.96358 0.94901 1.03799 1.21401 0.74353 0.98264 1.00297 0.88199 1.22177 1.02011 1.01071 0.96729 1.48410 1.06207 1.41298 1.17670 1.77056 0.99041 1.20535 1.14880 1.23895 0.95923 0.97117 0.93539 1.20003 0.92594 1.14627 1.01828 1.16832 0.80647 0.77690 0.86000 1.90726 1.78148 1.58175 1.15668 1.48659 1.20043 1.51026 1.13829 1.22297 0.98526 0.98184 0.82779 1.22766 0.92706 1.01080 0.99129 1.19482 0.92136 0.79308 0.88233 1.86077 1.84456 1.23508 1.45642 1.21531 0.94091 1.38253 1.03559 0.91530 1.25065 0.99112 0.93965 0.95104 1.69569 1.36897 1.39292 1.07748 0.86409 0.84223 0.78917 0.77403 1.20409 1.21009 1.19713 1.23017 0.82200 0.99363 0.97238 1.20398 0.90306 0.94904 0.90501 1.20488 0.99259 1.04980 0.89745 1.23279 1.00346 0.94403 1.01452 1.23199 1.02775 1.00646 0.91826 0.92448 0.92049 0.91998 0.90375 0.91321 0.90509 0.91981 0.90916 0.79582 0.91968 0.92039 0.90557 0.90624 0.76247 0.91936 0.91737 0.91635 0.86969 0.86772 0.88516 0.88780 0.86275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.67 37.16 0.36 -0.50 16 2 C -0.13 -1.08 5.65 -26.73 -0.15 -1.24 16 3 C 0.16 1.46 3.10 -67.93 -0.21 1.25 16 4 H 0.10 0.78 6.59 -51.93 -0.34 0.44 16 5 C -0.16 -1.30 9.20 37.16 0.34 -0.96 16 6 N -0.36 -4.64 3.25 -50.16 -0.16 -4.80 16 7 N -0.30 -4.28 12.33 30.86 0.38 -3.89 16 8 C 0.08 1.24 10.40 -16.98 -0.18 1.06 16 9 C -0.28 -4.64 5.24 -105.07 -0.55 -5.19 16 10 C 0.60 11.89 5.28 -12.52 -0.07 11.83 16 11 O -0.55 -12.14 13.34 5.27 0.07 -12.07 16 12 N -0.60 -12.32 3.33 -171.79 -0.57 -12.89 16 13 C 0.11 1.91 6.71 -2.53 -0.02 1.89 16 14 C -0.12 -2.36 6.23 -24.58 -0.15 -2.51 16 15 C 0.25 5.96 0.86 -89.93 -0.08 5.88 16 16 O -0.59 -14.75 13.07 -35.23 -0.46 -15.21 16 17 C -0.54 -13.86 8.12 -34.44 -0.28 -14.14 16 18 H 0.07 1.69 7.76 -52.48 -0.41 1.29 16 19 C 0.07 1.82 5.28 -17.82 -0.09 1.73 16 20 N -0.90 -23.61 10.97 55.43 0.61 -23.01 16 21 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 25 C 0.10 2.46 5.55 -3.06 -0.02 2.44 16 26 C 0.17 2.50 6.66 -81.60 -0.54 1.96 16 27 C -0.12 -1.61 5.86 -91.77 -0.54 -2.15 16 28 C -0.16 -2.32 9.47 -26.73 -0.25 -2.58 16 29 C -0.15 -2.00 9.60 -26.73 -0.26 -2.26 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.30 6.57 -51.93 -0.34 -0.04 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.43 6.56 -51.93 -0.34 0.09 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.19 2.43 7.73 -52.48 -0.41 2.02 16 39 H 0.06 0.96 5.93 -51.93 -0.31 0.66 16 40 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 41 H 0.08 1.44 8.03 -51.93 -0.42 1.02 16 42 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 43 H 0.39 10.00 6.98 45.56 0.32 10.31 16 44 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 45 H 0.06 1.67 8.07 -51.93 -0.42 1.25 16 46 H 0.07 1.69 7.82 -51.93 -0.41 1.28 16 47 H 0.11 1.12 7.03 -51.93 -0.36 0.75 16 48 H 0.11 2.13 4.55 -51.93 -0.24 1.89 16 49 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 50 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 51 H 0.12 1.97 6.37 -51.93 -0.33 1.64 16 LS Contribution 399.75 15.07 6.02 6.02 Total: -1.00 -29.49 399.75 -9.18 -38.67 By element: Atomic # 1 Polarization: 22.70 SS G_CDS: -7.36 Total: 15.34 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: -2.68 Total: -3.49 kcal Atomic # 7 Polarization: -44.84 SS G_CDS: 0.25 Total: -44.59 kcal Atomic # 8 Polarization: -26.89 SS G_CDS: -0.39 Total: -27.28 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -29.49 -9.18 -38.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592846607.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.171 kcal (2) G-P(sol) polarization free energy of solvation -29.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds