Wall clock time and date at job start Wed Apr 1 2020 05:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47278 * 2 1 4 4 H 1.08994 * 109.99948 * 304.62343 * 3 2 1 5 5 C 1.54332 * 109.99005 * 183.58421 * 3 2 1 6 6 H 1.09000 * 110.52278 * 336.97615 * 5 3 2 7 7 N 1.46498 * 110.85011 * 100.20314 * 5 3 2 8 8 C 1.34771 * 120.00055 * 200.14685 * 7 5 3 9 9 O 1.21618 * 120.00284 * 359.97438 * 8 7 5 10 10 C 1.47420 * 120.00425 * 179.97438 * 8 7 5 11 11 C 1.36087 * 126.45484 * 179.68458 * 10 8 7 12 12 O 1.34255 * 106.95265 * 179.84434 * 11 10 8 13 13 C 1.34053 * 108.22855 * 0.42428 * 12 11 10 14 14 C 1.50701 * 125.38077 * 179.76816 * 13 12 11 15 15 C 1.54268 * 110.03109 * 57.86741 * 14 13 12 16 16 C 1.54961 * 104.15586 * 217.13629 * 15 14 13 17 17 C 1.54886 * 102.78144 * 37.88961 * 16 15 14 18 18 C 1.53871 * 110.03267 * 300.64905 * 14 13 12 19 19 N 1.29940 * 109.24050 * 359.73157 * 13 12 11 20 20 C 1.55157 * 103.01870 * 218.66740 * 5 3 2 21 21 C 1.54903 * 101.58240 * 35.30681 * 20 5 3 22 22 N 1.47024 * 109.87775 * 65.71943 * 3 2 1 23 23 C 1.36931 * 125.64748 * 298.39313 * 22 3 2 24 24 H 1.08000 * 120.00156 * 333.71028 * 23 22 3 25 25 C 1.38810 * 120.00109 * 153.71456 * 23 22 3 26 26 N 1.31625 * 119.99544 * 334.83488 * 25 23 22 27 27 Si 1.86797 * 120.00288 * 154.83946 * 25 23 22 28 28 H 1.48501 * 109.47160 * 59.99892 * 27 25 23 29 29 H 1.48495 * 109.47190 * 299.99575 * 27 25 23 30 30 H 1.48506 * 109.47246 * 179.97438 * 27 25 23 31 31 H 1.08996 * 109.47405 * 171.79113 * 1 2 3 32 32 H 1.08994 * 109.46986 * 291.79469 * 1 2 3 33 33 H 1.09004 * 109.47097 * 51.78906 * 1 2 3 34 34 H 1.09008 * 109.46944 * 240.00143 * 2 1 3 35 35 H 1.08995 * 109.47385 * 120.00222 * 2 1 3 36 36 H 0.96996 * 120.00093 * 20.13881 * 7 5 3 37 37 H 1.08002 * 126.52322 * 0.02562 * 11 10 8 38 38 H 1.08999 * 110.01188 * 179.25501 * 14 13 12 39 39 H 1.09000 * 110.48851 * 335.78398 * 15 14 13 40 40 H 1.09000 * 110.48347 * 98.42460 * 15 14 13 41 41 H 1.09002 * 110.71724 * 279.57159 * 16 15 14 42 42 H 1.09002 * 110.92139 * 156.29942 * 16 15 14 43 43 H 1.08995 * 110.48473 * 203.40413 * 17 16 15 44 44 H 1.08998 * 110.59705 * 80.81599 * 17 16 15 45 45 H 1.09005 * 110.03394 * 238.57295 * 18 14 13 46 46 H 1.09006 * 110.03046 * 359.97438 * 18 14 13 47 47 H 1.09007 * 111.00612 * 277.23401 * 20 5 3 48 48 H 1.09004 * 111.00567 * 153.38295 * 20 5 3 49 49 H 1.09002 * 110.37204 * 204.15080 * 21 20 5 50 50 H 1.09011 * 110.36743 * 81.83069 * 21 20 5 51 51 H 0.96996 * 120.00054 * 353.73502 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6156 1.9880 -0.8428 5 6 3.5806 1.4574 -0.0907 6 1 3.9935 0.5135 0.2653 7 7 4.0196 1.7330 -1.4609 8 6 5.2661 1.3985 -1.8492 9 8 6.0266 0.8683 -1.0621 10 6 5.7078 1.6752 -3.2282 11 6 6.9317 1.4001 -3.7559 12 8 6.9078 1.8093 -5.0343 13 6 5.6994 2.3330 -5.2844 14 6 5.2563 2.9147 -6.6022 15 6 5.3863 1.8565 -7.7172 16 6 5.8549 2.6646 -8.9536 17 6 6.8300 3.6985 -8.3378 18 6 6.1734 4.0855 -6.9966 19 7 4.9703 2.2593 -4.2114 20 6 3.9753 2.6211 0.8567 21 6 2.9034 2.4947 1.9678 22 7 1.6706 2.1034 1.2603 23 6 0.3933 2.3150 1.7059 24 1 -0.4193 2.3936 0.9988 25 6 0.1427 2.4287 3.0665 26 7 0.9578 1.8683 3.9348 27 14 -1.3514 3.3768 3.6650 28 1 -2.5844 2.7504 3.1243 29 1 -1.2648 4.7836 3.1976 30 1 -1.3929 3.3496 5.1493 31 1 -0.3634 -1.0171 -0.1467 32 1 -0.3633 0.3815 0.9542 33 1 -0.3633 0.6357 -0.8075 34 1 1.8933 -0.5139 -0.8901 35 1 1.8933 -0.5138 0.8899 36 1 3.4132 2.1560 -2.0886 37 1 7.7629 0.9376 -3.2444 38 1 4.2238 3.2567 -6.5306 39 1 6.1302 1.1071 -7.4471 40 1 4.4223 1.3860 -7.9109 41 1 5.0115 3.1648 -9.4297 42 1 6.3726 2.0216 -9.6655 43 1 6.9192 4.5712 -8.9848 44 1 7.8084 3.2491 -8.1680 45 1 5.5859 4.9957 -7.1173 46 1 6.9388 4.2333 -6.2347 47 1 3.8991 3.5821 0.3479 48 1 4.9766 2.4732 1.2611 49 1 2.7643 3.4514 2.4714 50 1 3.1895 1.7255 2.6853 51 1 1.6808 1.3007 3.6249 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087779110.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:32 Heat of formation + Delta-G solvation = -11.630661 kcal Electronic energy + Delta-G solvation = -30817.194538 eV Core-core repulsion = 26717.843414 eV Total energy + Delta-G solvation = -4099.351123 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -43.70066 -39.68251 -38.53851 -37.83202 -35.09530 -34.17998 -32.54853 -31.95834 -31.53499 -29.24669 -28.76242 -28.36089 -26.96633 -24.84634 -23.72832 -22.77473 -21.83695 -21.28933 -21.07704 -20.21702 -20.12054 -19.38695 -18.06416 -17.34401 -17.04888 -16.81799 -16.14399 -16.09895 -15.73805 -14.72617 -14.56704 -14.34574 -14.22711 -13.94209 -13.85806 -13.67058 -13.48501 -13.08730 -12.87550 -12.38538 -12.31200 -12.13529 -12.03844 -11.64752 -11.62855 -11.59358 -11.41516 -11.24739 -11.08339 -11.06583 -11.04652 -10.89526 -10.74478 -10.48254 -10.28129 -10.10720 -10.05852 -9.95203 -9.81157 -9.40285 -9.24769 -8.72063 -8.37804 -6.88511 -6.03302 -3.19993 0.91988 1.80853 2.28192 3.13148 3.29645 3.49938 3.53092 3.55865 3.71520 4.03496 4.07068 4.38744 4.58074 4.63590 4.70429 4.88105 4.93620 4.96696 5.03920 5.14456 5.14798 5.28603 5.34801 5.35054 5.36996 5.42038 5.43336 5.46338 5.57525 5.65297 5.71236 5.74101 5.82153 5.85976 5.96089 6.00253 6.09068 6.18724 6.31014 6.41594 6.51945 6.60679 6.69132 6.79926 6.96785 7.06024 7.12633 7.23888 7.36079 7.68308 7.89224 8.25862 8.51488 9.03842 9.81351 10.40168 11.24413 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017855 B = 0.002186 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.801183 B =12807.153835 C =13289.779113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C 0.157 3.843 4 H 0.038 0.962 5 C 0.134 3.866 6 H 0.094 0.906 7 N -0.695 5.695 8 C 0.599 3.401 9 O -0.540 6.540 10 C -0.066 4.066 11 C 0.007 3.993 12 O -0.194 6.194 13 C 0.204 3.796 14 C 0.003 3.997 15 C -0.120 4.120 16 C -0.124 4.124 17 C -0.125 4.125 18 C -0.120 4.120 19 N -0.458 5.458 20 C -0.144 4.144 21 C 0.144 3.856 22 N -0.589 5.589 23 C -0.324 4.324 24 H 0.063 0.937 25 C -0.025 4.025 26 N -0.913 5.913 27 Si 1.064 2.936 28 H -0.293 1.293 29 H -0.294 1.294 30 H -0.286 1.286 31 H 0.029 0.971 32 H 0.092 0.908 33 H 0.038 0.962 34 H 0.038 0.962 35 H 0.056 0.944 36 H 0.407 0.593 37 H 0.231 0.769 38 H 0.118 0.882 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.068 0.932 45 H 0.079 0.921 46 H 0.070 0.930 47 H 0.065 0.935 48 H 0.066 0.934 49 H 0.051 0.949 50 H 0.030 0.970 51 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.040 1.559 -25.179 27.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C 0.049 3.951 4 H 0.056 0.944 5 C 0.030 3.970 6 H 0.112 0.888 7 N -0.344 5.344 8 C 0.384 3.616 9 O -0.417 6.417 10 C -0.186 4.186 11 C -0.067 4.067 12 O -0.080 6.080 13 C -0.005 4.005 14 C -0.017 4.017 15 C -0.159 4.159 16 C -0.161 4.161 17 C -0.162 4.162 18 C -0.159 4.159 19 N -0.188 5.188 20 C -0.183 4.183 21 C 0.018 3.982 22 N -0.315 5.315 23 C -0.452 4.452 24 H 0.081 0.919 25 C -0.227 4.227 26 N -0.553 5.553 27 Si 0.894 3.106 28 H -0.220 1.220 29 H -0.221 1.221 30 H -0.212 1.212 31 H 0.048 0.952 32 H 0.111 0.889 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.243 0.757 37 H 0.247 0.753 38 H 0.136 0.864 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.087 0.913 45 H 0.098 0.902 46 H 0.088 0.912 47 H 0.084 0.916 48 H 0.085 0.915 49 H 0.069 0.931 50 H 0.048 0.952 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.044 1.972 -23.140 25.716 hybrid contribution 1.203 -0.746 -1.567 2.112 sum 12.247 1.226 -24.707 27.603 Atomic orbital electron populations 1.21886 0.95599 0.98854 1.04224 1.21878 0.97129 0.97537 0.99640 1.21194 0.89483 0.92418 0.91974 0.94431 1.22163 0.95813 0.99201 0.79847 0.88805 1.45862 1.13598 1.60736 1.14209 1.16732 0.82450 0.78521 0.83925 1.90822 1.53908 1.44048 1.52953 1.21901 0.93079 1.07255 0.96331 1.25289 1.00405 0.99869 0.81136 1.84354 1.36090 1.59202 1.28376 1.26199 0.79259 0.97568 0.97467 1.20497 1.01362 0.95320 0.84488 1.22511 1.02583 0.97161 0.93611 1.22513 0.99215 0.97519 0.96859 1.22383 0.98940 0.99180 0.95728 1.22258 0.98621 0.97059 0.97927 1.70813 1.31938 1.17115 0.98903 1.23200 0.99445 0.97740 0.97964 1.21549 0.85275 0.98642 0.92728 1.44500 1.01918 1.65371 1.19752 1.19596 0.83753 1.49221 0.92664 0.91925 1.25838 1.04019 1.00557 0.92330 1.70760 1.19049 1.29135 1.36353 0.83532 0.74823 0.76133 0.76097 1.21966 1.22105 1.21158 0.95225 0.88940 0.94276 0.94318 0.92545 0.75709 0.75305 0.86391 0.90814 0.90360 0.90908 0.90981 0.91101 0.91286 0.90245 0.91166 0.91579 0.91481 0.93089 0.95187 0.91877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 8.98 37.16 0.33 -2.65 16 2 C -0.12 -2.44 5.47 -26.73 -0.15 -2.58 16 3 C 0.16 3.23 3.00 -66.95 -0.20 3.03 16 4 H 0.04 0.78 7.69 -51.93 -0.40 0.38 16 5 C 0.13 2.51 2.76 -66.09 -0.18 2.33 16 6 H 0.09 1.86 7.40 -51.93 -0.38 1.48 16 7 N -0.69 -11.37 5.20 -53.10 -0.28 -11.64 16 8 C 0.60 9.78 7.81 -12.52 -0.10 9.69 16 9 O -0.54 -10.08 16.62 5.26 0.09 -10.00 16 10 C -0.07 -0.90 6.99 -83.02 -0.58 -1.48 16 11 C 0.01 0.07 11.94 29.96 0.36 0.43 16 12 O -0.19 -2.00 10.57 6.51 0.07 -1.93 16 13 C 0.20 2.14 6.50 -13.08 -0.08 2.05 16 14 C 0.00 0.02 3.44 -90.65 -0.31 -0.29 16 15 C -0.12 -0.70 6.36 -25.03 -0.16 -0.86 16 16 C -0.12 -0.55 6.91 -24.70 -0.17 -0.72 16 17 C -0.12 -0.59 6.83 -25.07 -0.17 -0.77 16 18 C -0.12 -0.72 6.45 -25.62 -0.17 -0.88 16 19 N -0.46 -5.97 11.06 -7.65 -0.08 -6.05 16 20 C -0.14 -2.80 6.77 -24.59 -0.17 -2.96 16 21 C 0.14 3.35 5.56 -2.53 -0.01 3.34 16 22 N -0.59 -14.39 2.92 -162.57 -0.47 -14.86 16 23 C -0.32 -8.68 7.22 -15.06 -0.11 -8.79 16 24 H 0.06 1.68 7.24 -52.49 -0.38 1.30 16 25 C -0.02 -0.68 5.17 -17.43 -0.09 -0.77 16 26 N -0.91 -27.10 13.05 55.49 0.72 -26.38 16 27 Si 1.06 25.03 29.99 -169.99 -5.10 19.93 16 28 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 29 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 30 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.09 2.17 5.52 -51.93 -0.29 1.88 16 33 H 0.04 0.74 8.13 -51.93 -0.42 0.32 16 34 H 0.04 0.69 8.14 -51.92 -0.42 0.27 16 35 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.41 6.24 8.05 -40.82 -0.33 5.91 16 37 H 0.23 1.85 8.06 -52.49 -0.42 1.42 16 38 H 0.12 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.07 0.49 7.72 -51.93 -0.40 0.09 16 40 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 42 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 44 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 45 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.07 0.49 7.67 -51.93 -0.40 0.09 16 47 H 0.07 1.25 8.14 -51.92 -0.42 0.83 16 48 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 49 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 50 H 0.03 0.75 6.73 -51.92 -0.35 0.40 16 51 H 0.27 8.08 6.20 -40.82 -0.25 7.82 16 LS Contribution 405.14 15.07 6.11 6.11 Total: -1.00 -31.85 405.14 -9.22 -41.08 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -8.32 Total: 5.65 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -1.96 Total: -1.90 kcal Atomic # 7 Polarization: -58.83 SS G_CDS: -0.11 Total: -58.94 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: 0.16 Total: -11.93 kcal Atomic # 14 Polarization: 25.03 SS G_CDS: -5.10 Total: 19.93 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -31.85 -9.22 -41.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087779110.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.445 kcal (2) G-P(sol) polarization free energy of solvation -31.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds